Wall clock time and date at job start Tue Mar 31 2020 12:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.87649 * 2 1 4 4 C 1.54325 * 110.01192 * 238.90540 * 2 1 3 5 5 C 1.55162 * 102.94304 * 218.31837 * 4 2 1 6 6 H 1.09004 * 111.03476 * 277.41185 * 5 4 2 7 7 C 1.52993 * 111.00399 * 153.57240 * 5 4 2 8 8 C 1.54911 * 101.58042 * 35.49565 * 5 4 2 9 9 N 1.47023 * 109.88307 * 121.01670 * 2 1 3 10 10 C 1.34776 * 125.65137 * 298.54520 * 9 2 1 11 11 O 1.21369 * 119.99389 * 0.02562 * 10 9 2 12 12 C 1.49356 * 120.00336 * 180.02562 * 10 9 2 13 13 O 1.21356 * 120.00388 * 0.02562 * 12 10 9 14 14 N 1.34783 * 120.00123 * 180.02562 * 12 10 9 15 15 C 1.39117 * 119.99866 * 174.82529 * 14 12 10 16 16 C 1.39704 * 119.57722 * 185.70414 * 15 14 12 17 17 C 1.38651 * 119.49553 * 180.02562 * 16 15 14 18 18 C 1.38344 * 118.66921 * 359.97438 * 17 16 15 19 19 C 1.40593 * 119.13806 * 0.02562 * 18 17 16 20 20 C 1.41332 * 119.78650 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00528 * 5.69360 * 20 19 18 22 22 C 1.40031 * 119.99820 * 185.69297 * 20 19 18 23 23 N 1.30743 * 120.00469 * 354.92061 * 22 20 19 24 24 Si 1.86803 * 119.99817 * 174.92114 * 22 20 19 25 25 H 1.48503 * 109.47470 * 94.99877 * 24 22 20 26 26 H 1.48505 * 109.47203 * 214.99668 * 24 22 20 27 27 H 1.48504 * 109.47140 * 334.99815 * 24 22 20 28 28 N 1.31937 * 119.57755 * 5.44085 * 15 14 12 29 29 H 1.08997 * 109.46997 * 300.70096 * 1 2 3 30 30 H 1.08996 * 109.47318 * 60.69452 * 1 2 3 31 31 H 1.08999 * 109.47198 * 180.70577 * 1 2 3 32 32 H 1.09000 * 110.71681 * 336.67321 * 4 2 1 33 33 H 1.08997 * 110.72157 * 99.95103 * 4 2 1 34 34 H 1.09000 * 109.47312 * 306.34698 * 7 5 4 35 35 H 1.09000 * 109.47528 * 66.35144 * 7 5 4 36 36 H 1.09007 * 109.46910 * 186.35128 * 7 5 4 37 37 H 1.08995 * 110.36795 * 204.15338 * 8 5 4 38 38 H 1.09006 * 110.45760 * 81.88237 * 8 5 4 39 39 H 0.96994 * 119.99897 * 354.82751 * 14 12 10 40 40 H 1.07999 * 120.25234 * 359.97438 * 16 15 14 41 41 H 1.07992 * 120.66500 * 179.97438 * 17 16 15 42 42 H 1.07999 * 120.42892 * 179.97438 * 18 17 16 43 43 H 0.96999 * 120.00358 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2417 5 6 3.2918 -1.5107 -0.6894 6 1 4.1686 -0.8639 -0.6566 7 6 3.5729 -2.7693 -1.5127 8 6 2.8176 -1.8762 0.7393 9 7 2.0300 -0.7124 1.1849 10 6 1.8050 -0.3603 2.4663 11 8 1.1375 0.6218 2.7174 12 6 2.3770 -1.1786 3.5771 13 8 3.0448 -2.1603 3.3260 14 7 2.1516 -0.8267 4.8585 15 6 2.5921 -1.6463 5.8927 16 6 2.2508 -1.3362 7.2114 17 6 2.6911 -2.1540 8.2409 18 6 3.4603 -3.2603 7.9270 19 6 3.7701 -3.5188 6.5802 20 6 4.5544 -4.6455 6.2440 21 1 4.8365 -5.3547 7.0082 22 6 4.9658 -4.8422 4.9201 23 7 4.5432 -4.0402 3.9780 24 14 6.1186 -6.2508 4.4998 25 1 5.3248 -7.4240 4.0540 26 1 7.0363 -5.8312 3.4102 27 1 6.9112 -6.6170 5.7011 28 7 3.3224 -2.7095 5.6151 29 1 -0.3633 0.5247 0.8836 30 1 -0.3634 0.5030 -0.8961 31 1 -0.3633 -1.0276 0.0127 32 1 1.3104 -1.4472 -1.6178 33 1 2.3556 -0.0451 -2.0190 34 1 2.6700 -3.3775 -1.5664 35 1 3.8793 -2.4842 -2.5192 36 1 4.3697 -3.3428 -1.0391 37 1 3.6742 -2.0285 1.3959 38 1 2.1942 -2.7701 0.7168 39 1 1.6823 -0.0020 5.0596 40 1 1.6492 -0.4657 7.4274 41 1 2.4388 -1.9318 9.2671 42 1 3.8187 -3.9163 8.7065 43 1 4.8279 -4.1767 3.0608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889956466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:58 Heat of formation + Delta-G solvation = -8.446381 kcal Electronic energy + Delta-G solvation = -27204.715840 eV Core-core repulsion = 23443.889514 eV Total energy + Delta-G solvation = -3760.826326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50684 -39.03043 -37.74919 -37.09566 -34.33609 -33.20107 -32.85895 -31.64653 -30.38151 -29.20101 -27.15625 -25.97818 -25.62232 -24.48115 -22.14349 -21.37850 -20.52927 -20.24510 -18.98653 -17.89185 -16.95012 -16.80930 -16.18217 -15.53051 -15.08745 -14.72094 -14.48511 -14.23931 -13.93153 -13.84073 -13.56827 -13.50389 -13.09892 -12.90504 -12.82457 -12.61809 -12.20018 -12.03313 -12.00751 -11.93169 -11.61867 -11.21948 -11.05926 -11.00268 -10.80791 -10.70003 -10.60493 -10.57401 -10.51969 -9.98905 -9.77510 -9.09059 -8.84438 -8.59188 -8.03293 -7.31665 -7.05094 -6.23513 -4.45306 1.96156 2.69856 2.82060 3.08631 3.12768 3.15317 3.23279 3.93046 3.97932 4.01098 4.41716 4.50558 4.71458 4.85825 4.98838 5.10330 5.22414 5.26549 5.39803 5.47834 5.58012 5.70821 5.75961 5.80126 5.96318 5.97264 6.05706 6.06714 6.15579 6.18365 6.27982 6.43189 6.44039 6.58343 6.76502 6.79463 7.16709 7.39207 7.50200 7.52788 7.76123 7.86407 8.04820 8.18707 8.37780 8.64208 8.93900 9.02394 10.14236 10.40411 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.005125 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.160167 B = 5462.559626 C = 7631.258841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 H 0.076 0.924 4 C -0.124 4.124 5 C -0.109 4.109 6 H 0.083 0.917 7 C -0.139 4.139 8 C 0.101 3.899 9 N -0.590 5.590 10 C 0.522 3.478 11 O -0.536 6.536 12 C 0.469 3.531 13 O -0.383 6.383 14 N -0.639 5.639 15 C 0.369 3.631 16 C -0.348 4.348 17 C -0.036 4.036 18 C -0.301 4.301 19 C 0.272 3.728 20 C -0.425 4.425 21 H 0.083 0.917 22 C 0.061 3.939 23 N -0.663 5.663 24 Si 0.896 3.104 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.263 1.263 28 N -0.474 5.474 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.411 0.589 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 4.711 -11.901 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.094 0.906 4 C -0.162 4.162 5 C -0.128 4.128 6 H 0.102 0.898 7 C -0.197 4.197 8 C -0.021 4.021 9 N -0.324 5.324 10 C 0.306 3.694 11 O -0.413 6.413 12 C 0.245 3.755 13 O -0.246 6.246 14 N -0.287 5.287 15 C 0.131 3.869 16 C -0.374 4.374 17 C -0.060 4.060 18 C -0.324 4.324 19 C 0.147 3.853 20 C -0.455 4.455 21 H 0.101 0.899 22 C -0.167 4.167 23 N -0.282 5.282 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.187 1.187 28 N -0.193 5.193 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.246 0.754 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.783 4.335 -13.049 14.029 hybrid contribution -0.065 0.124 0.802 0.814 sum -2.847 4.459 -12.247 13.341 Atomic orbital electron populations 1.22139 0.94666 1.02425 1.02851 1.21632 0.94718 0.96409 0.84314 0.90598 1.22826 0.97783 0.99439 0.96145 1.22428 0.97818 0.97687 0.94908 0.89835 1.21668 1.02212 0.96547 0.99257 1.22777 0.97017 0.87528 0.94783 1.48334 1.51206 1.28759 1.04150 1.20511 0.80842 0.85097 0.82987 1.90678 1.39573 1.27576 1.83517 1.20057 0.84358 0.87241 0.83817 1.91145 1.30076 1.21815 1.81526 1.42996 1.57030 1.24690 1.04033 1.18548 0.93172 0.90875 0.84333 1.20519 1.17864 1.07015 0.91983 1.20581 0.95065 0.93846 0.96542 1.21658 1.11026 1.02230 0.97450 1.18362 0.89461 0.91195 0.86286 1.19575 1.26149 1.05724 0.94100 0.89887 1.26141 0.96757 0.97084 0.96761 1.70320 1.28671 1.28630 1.00558 0.86494 0.80598 0.81719 0.79116 1.19716 1.20238 1.18680 1.68649 1.13455 1.03493 1.33691 0.91097 0.91771 0.92435 0.90310 0.90195 0.92363 0.92440 0.91845 0.87221 0.90984 0.75363 0.88746 0.88385 0.88396 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.11 37.16 0.34 -1.54 16 2 C 0.13 1.60 3.45 -66.95 -0.23 1.37 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.12 -1.15 5.95 -24.89 -0.15 -1.30 16 5 C -0.11 -1.15 3.64 -88.47 -0.32 -1.48 16 6 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 7 C -0.14 -1.27 9.30 37.15 0.35 -0.92 16 8 C 0.10 1.45 5.53 -2.53 -0.01 1.43 16 9 N -0.59 -9.03 3.07 -163.55 -0.50 -9.53 16 10 C 0.52 9.52 7.70 -11.63 -0.09 9.43 16 11 O -0.54 -10.19 15.51 5.48 0.09 -10.11 16 12 C 0.47 9.88 7.81 -11.63 -0.09 9.79 16 13 O -0.38 -8.98 9.60 5.49 0.05 -8.92 16 14 N -0.64 -13.53 5.37 -11.83 -0.06 -13.59 16 15 C 0.37 9.04 7.42 -155.09 -1.15 7.89 16 16 C -0.35 -7.88 9.96 -38.88 -0.39 -8.27 16 17 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 18 C -0.30 -7.43 9.83 -38.65 -0.38 -7.81 16 19 C 0.27 7.46 6.54 -85.00 -0.56 6.91 16 20 C -0.42 -11.33 9.13 -37.73 -0.34 -11.67 16 21 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 22 C 0.06 1.54 5.49 -17.34 -0.10 1.44 16 23 N -0.66 -17.21 9.07 55.55 0.50 -16.71 16 24 Si 0.90 18.45 29.56 -169.99 -5.03 13.43 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 27 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 28 N -0.47 -12.97 5.74 -10.28 -0.06 -13.03 16 29 H 0.07 0.98 6.88 -51.93 -0.36 0.62 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.68 7.73 -51.93 -0.40 0.28 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.11 1.87 6.15 -51.93 -0.32 1.55 16 38 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 39 H 0.41 7.53 8.18 -40.82 -0.33 7.19 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -30.56 352.66 -9.24 -39.80 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.02 Total: 9.29 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -3.53 Total: 4.06 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.12 Total: -52.86 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.14 Total: -19.03 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.56 -9.24 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889956466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.352 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds