Wall clock time and date at job start Tue Mar 31 2020 12:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.87649 * 2 1 4 4 C 1.54325 * 110.01192 * 238.90540 * 2 1 3 5 5 C 1.55162 * 102.94304 * 218.31837 * 4 2 1 6 6 H 1.09004 * 111.03476 * 277.41185 * 5 4 2 7 7 C 1.52993 * 111.00399 * 153.57240 * 5 4 2 8 8 C 1.54911 * 101.58042 * 35.49565 * 5 4 2 9 9 N 1.47023 * 109.88307 * 121.01670 * 2 1 3 10 10 C 1.34776 * 125.65137 * 298.54520 * 9 2 1 11 11 O 1.21369 * 119.99389 * 0.02562 * 10 9 2 12 12 C 1.49356 * 120.00336 * 180.02562 * 10 9 2 13 13 O 1.21356 * 120.00388 * 0.02562 * 12 10 9 14 14 N 1.34783 * 120.00123 * 180.02562 * 12 10 9 15 15 C 1.39117 * 119.99866 * 174.82529 * 14 12 10 16 16 C 1.39704 * 119.57722 * 185.70414 * 15 14 12 17 17 C 1.38651 * 119.49553 * 180.02562 * 16 15 14 18 18 C 1.38344 * 118.66921 * 359.97438 * 17 16 15 19 19 C 1.40593 * 119.13806 * 0.02562 * 18 17 16 20 20 C 1.41332 * 119.78650 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00528 * 5.69360 * 20 19 18 22 22 C 1.40031 * 119.99820 * 185.69297 * 20 19 18 23 23 N 1.30743 * 120.00469 * 354.92061 * 22 20 19 24 24 Si 1.86803 * 119.99817 * 174.92114 * 22 20 19 25 25 H 1.48503 * 109.47470 * 94.99877 * 24 22 20 26 26 H 1.48505 * 109.47203 * 214.99668 * 24 22 20 27 27 H 1.48504 * 109.47140 * 334.99815 * 24 22 20 28 28 N 1.31937 * 119.57755 * 5.44085 * 15 14 12 29 29 H 1.08997 * 109.46997 * 300.70096 * 1 2 3 30 30 H 1.08996 * 109.47318 * 60.69452 * 1 2 3 31 31 H 1.08999 * 109.47198 * 180.70577 * 1 2 3 32 32 H 1.09000 * 110.71681 * 336.67321 * 4 2 1 33 33 H 1.08997 * 110.72157 * 99.95103 * 4 2 1 34 34 H 1.09000 * 109.47312 * 306.34698 * 7 5 4 35 35 H 1.09000 * 109.47528 * 66.35144 * 7 5 4 36 36 H 1.09007 * 109.46910 * 186.35128 * 7 5 4 37 37 H 1.08995 * 110.36795 * 204.15338 * 8 5 4 38 38 H 1.09006 * 110.45760 * 81.88237 * 8 5 4 39 39 H 0.96994 * 119.99897 * 354.82751 * 14 12 10 40 40 H 1.07999 * 120.25234 * 359.97438 * 16 15 14 41 41 H 1.07992 * 120.66500 * 179.97438 * 17 16 15 42 42 H 1.07999 * 120.42892 * 179.97438 * 18 17 16 43 43 H 0.96999 * 120.00358 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2417 5 6 3.2918 -1.5107 -0.6894 6 1 4.1686 -0.8639 -0.6566 7 6 3.5729 -2.7693 -1.5127 8 6 2.8176 -1.8762 0.7393 9 7 2.0300 -0.7124 1.1849 10 6 1.8050 -0.3603 2.4663 11 8 1.1375 0.6218 2.7174 12 6 2.3770 -1.1786 3.5771 13 8 3.0448 -2.1603 3.3260 14 7 2.1516 -0.8267 4.8585 15 6 2.5921 -1.6463 5.8927 16 6 2.2508 -1.3362 7.2114 17 6 2.6911 -2.1540 8.2409 18 6 3.4603 -3.2603 7.9270 19 6 3.7701 -3.5188 6.5802 20 6 4.5544 -4.6455 6.2440 21 1 4.8365 -5.3547 7.0082 22 6 4.9658 -4.8422 4.9201 23 7 4.5432 -4.0402 3.9780 24 14 6.1186 -6.2508 4.4998 25 1 5.3248 -7.4240 4.0540 26 1 7.0363 -5.8312 3.4102 27 1 6.9112 -6.6170 5.7011 28 7 3.3224 -2.7095 5.6151 29 1 -0.3633 0.5247 0.8836 30 1 -0.3634 0.5030 -0.8961 31 1 -0.3633 -1.0276 0.0127 32 1 1.3104 -1.4472 -1.6178 33 1 2.3556 -0.0451 -2.0190 34 1 2.6700 -3.3775 -1.5664 35 1 3.8793 -2.4842 -2.5192 36 1 4.3697 -3.3428 -1.0391 37 1 3.6742 -2.0285 1.3959 38 1 2.1942 -2.7701 0.7168 39 1 1.6823 -0.0020 5.0596 40 1 1.6492 -0.4657 7.4274 41 1 2.4388 -1.9318 9.2671 42 1 3.8187 -3.9163 8.7065 43 1 4.8279 -4.1767 3.0608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889956466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:58 Heat of formation + Delta-G solvation = -26.171165 kcal Electronic energy + Delta-G solvation = -27205.484445 eV Core-core repulsion = 23443.889514 eV Total energy + Delta-G solvation = -3761.594930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92502 -40.60061 -39.26348 -38.64633 -36.10668 -34.95352 -33.93975 -32.75560 -32.26761 -31.06743 -28.06996 -27.64855 -26.92194 -25.93245 -23.75213 -23.12294 -21.78598 -21.38765 -20.49860 -19.57306 -18.42511 -18.24814 -17.84523 -16.96531 -16.49310 -16.43353 -16.29602 -15.66561 -15.28010 -15.17348 -15.06376 -14.75080 -14.64994 -14.24606 -13.85752 -13.77584 -13.71202 -13.64393 -13.15532 -12.89655 -12.81249 -12.74147 -12.57654 -12.53811 -12.40581 -12.26456 -11.77263 -11.73306 -11.62128 -11.57641 -11.47269 -10.91475 -10.44592 -9.94099 -9.85283 -9.17742 -8.91884 -8.09227 -6.42416 0.36887 1.02396 1.26301 1.30863 1.42830 1.52668 1.57033 2.27903 2.35467 2.49626 2.97583 3.33148 3.49925 3.68175 3.88191 4.00785 4.14896 4.27774 4.32152 4.37375 4.55132 4.63590 4.67525 4.74085 4.80646 4.84156 4.84992 4.93562 4.98119 5.00496 5.03169 5.13023 5.19526 5.27578 5.32428 5.36593 5.45788 5.63288 5.71991 5.89406 6.04741 6.15526 6.26272 6.47526 6.69150 6.82910 7.03663 7.28819 8.24466 8.55561 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.005125 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.160167 B = 5462.559626 C = 7631.258841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.079 0.921 4 C -0.110 4.110 5 C -0.100 4.100 6 H 0.085 0.915 7 C -0.135 4.135 8 C 0.099 3.901 9 N -0.584 5.584 10 C 0.524 3.476 11 O -0.548 6.548 12 C 0.458 3.542 13 O -0.409 6.409 14 N -0.634 5.634 15 C 0.347 3.653 16 C -0.344 4.344 17 C -0.033 4.033 18 C -0.322 4.322 19 C 0.238 3.762 20 C -0.461 4.461 21 H 0.086 0.914 22 C 0.016 3.984 23 N -0.692 5.692 24 Si 0.974 3.026 25 H -0.266 1.266 26 H -0.270 1.270 27 H -0.259 1.259 28 N -0.504 5.504 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.423 0.577 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 5.223 -13.652 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.097 0.903 4 C -0.147 4.147 5 C -0.119 4.119 6 H 0.104 0.896 7 C -0.193 4.193 8 C -0.023 4.023 9 N -0.317 5.317 10 C 0.307 3.693 11 O -0.427 6.427 12 C 0.236 3.764 13 O -0.273 6.273 14 N -0.284 5.284 15 C 0.109 3.891 16 C -0.369 4.369 17 C -0.057 4.057 18 C -0.345 4.345 19 C 0.112 3.888 20 C -0.492 4.492 21 H 0.105 0.895 22 C -0.210 4.210 23 N -0.311 5.311 24 Si 0.795 3.205 25 H -0.191 1.191 26 H -0.195 1.195 27 H -0.183 1.183 28 N -0.224 5.224 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.260 0.740 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.126 0.874 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.077 4.877 -14.821 15.903 hybrid contribution -0.055 0.056 1.387 1.389 sum -3.132 4.933 -13.434 14.650 Atomic orbital electron populations 1.22096 0.94007 1.02225 1.03176 1.22008 0.95311 0.96690 0.83927 0.90269 1.22844 0.96968 0.99730 0.95182 1.22393 0.98516 0.98675 0.92325 0.89629 1.21655 1.02034 0.95608 1.00000 1.22772 0.95601 0.87158 0.96798 1.48466 1.50295 1.28901 1.04044 1.19889 0.81154 0.84782 0.83456 1.90666 1.40331 1.27875 1.83814 1.20689 0.83922 0.87312 0.84462 1.91152 1.31069 1.23019 1.82069 1.42999 1.56861 1.24761 1.03801 1.19000 0.93139 0.90886 0.86031 1.20946 1.17049 1.07688 0.91213 1.21030 0.93542 0.92558 0.98556 1.21856 1.12165 1.03647 0.96817 1.18853 0.90285 0.91965 0.87652 1.19902 1.27604 1.06419 0.95290 0.89544 1.26961 0.98153 0.99742 0.96120 1.70461 1.29629 1.30196 1.00829 0.85319 0.78233 0.78068 0.78848 1.19148 1.19460 1.18282 1.68607 1.14610 1.04635 1.34510 0.93718 0.88534 0.92785 0.88992 0.87084 0.92074 0.90027 0.93019 0.90502 0.91771 0.73957 0.85447 0.84339 0.87358 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.11 71.98 0.66 -2.67 16 2 C 0.12 2.73 3.45 45.34 0.16 2.88 16 3 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.11 -1.67 5.95 31.79 0.19 -1.48 16 5 C -0.10 -1.94 3.64 -9.40 -0.03 -1.97 16 6 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16 7 C -0.14 -2.19 9.30 71.98 0.67 -1.52 16 8 C 0.10 2.88 5.53 86.86 0.48 3.36 16 9 N -0.58 -17.89 3.07 -789.71 -2.42 -20.32 16 10 C 0.52 19.54 7.70 87.24 0.67 20.21 16 11 O -0.55 -20.98 15.51 -3.31 -0.05 -21.03 16 12 C 0.46 20.11 7.81 87.24 0.68 20.79 16 13 O -0.41 -20.21 9.60 -3.26 -0.03 -20.24 16 14 N -0.63 -27.50 5.37 -309.71 -1.66 -29.16 16 15 C 0.35 17.37 7.42 133.30 0.99 18.36 16 16 C -0.34 -15.24 9.96 22.72 0.23 -15.02 16 17 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 18 C -0.32 -16.11 9.83 22.87 0.22 -15.89 16 19 C 0.24 13.51 6.54 40.20 0.26 13.77 16 20 C -0.46 -25.54 9.13 23.47 0.21 -25.33 16 21 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 22 C 0.02 0.83 5.49 85.29 0.47 1.30 16 23 N -0.69 -37.48 9.07 21.84 0.20 -37.28 16 24 Si 0.97 38.82 29.56 68.60 2.03 40.85 16 25 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 27 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 28 N -0.50 -28.64 5.74 -186.43 -1.07 -29.71 16 29 H 0.04 1.19 6.88 -2.39 -0.02 1.17 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.22 7.73 -2.39 -0.02 1.20 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 2.79 6.15 -2.39 -0.01 2.77 16 38 H 0.06 1.95 8.04 -2.38 -0.02 1.93 16 39 H 0.42 15.62 8.18 -92.71 -0.76 14.86 16 40 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 43 H 0.27 13.64 8.29 -92.71 -0.77 12.87 16 Total: -1.00 -69.53 352.66 3.35 -66.18 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.28 Total: 35.13 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.08 Total: 15.57 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -4.96 Total: -116.47 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.08 Total: -41.27 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -69.53 3.35 -66.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889956466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.013 kcal (2) G-P(sol) polarization free energy of solvation -69.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds