Wall clock time and date at job start Tue Mar 31 2020 12:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.77806 * 2 1 4 4 C 1.55160 * 110.72137 * 236.75909 * 2 1 3 5 5 C 1.55124 * 101.48226 * 205.96881 * 4 2 1 6 6 N 1.47416 * 104.72654 * 37.29830 * 5 4 2 7 7 C 1.34780 * 125.64946 * 155.81567 * 6 5 4 8 8 O 1.21357 * 119.99639 * 179.69528 * 7 6 5 9 9 C 1.49361 * 119.99953 * 359.68782 * 7 6 5 10 10 O 1.21357 * 120.00407 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99953 * 180.02562 * 9 7 6 12 12 C 1.39107 * 119.99860 * 185.15527 * 11 9 7 13 13 C 1.39715 * 119.58005 * 174.65064 * 12 11 9 14 14 C 1.38643 * 119.49658 * 180.02562 * 13 12 11 15 15 C 1.38348 * 118.67123 * 359.72688 * 14 13 12 16 16 C 1.40591 * 119.13353 * 0.53341 * 15 14 13 17 17 C 1.41340 * 119.78457 * 179.73163 * 16 15 14 18 18 H 1.08002 * 119.99948 * 359.72708 * 17 16 15 19 19 C 1.40028 * 119.99919 * 179.45097 * 17 16 15 20 20 N 1.30741 * 120.00436 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00114 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46949 * 90.00342 * 21 19 17 23 23 H 1.48493 * 109.47287 * 210.00424 * 21 19 17 24 24 H 1.48497 * 109.47102 * 330.00493 * 21 19 17 25 25 N 1.31937 * 119.58280 * 354.66754 * 12 11 9 26 26 C 1.47028 * 108.70314 * 335.55072 * 6 5 4 27 27 H 1.08999 * 109.88099 * 241.87117 * 26 6 5 28 28 C 1.53002 * 109.88459 * 120.70153 * 26 6 5 29 29 H 1.08993 * 109.47548 * 296.75924 * 1 2 3 30 30 H 1.08997 * 109.46932 * 56.76189 * 1 2 3 31 31 H 1.09004 * 109.46714 * 176.75613 * 1 2 3 32 32 H 1.08998 * 111.00625 * 324.21439 * 4 2 1 33 33 H 1.09001 * 111.00083 * 88.02417 * 4 2 1 34 34 H 1.09001 * 110.49961 * 278.45105 * 5 4 2 35 35 H 1.09001 * 110.34122 * 156.06324 * 5 4 2 36 36 H 0.96997 * 120.00028 * 5.15440 * 11 9 7 37 37 H 1.08000 * 120.24968 * 359.97438 * 13 12 11 38 38 H 1.07997 * 120.66521 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.43509 * 180.26607 * 15 14 13 40 40 H 0.96995 * 120.00524 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.47029 * 61.45314 * 28 26 6 42 42 H 1.08992 * 109.47123 * 181.45600 * 28 26 6 43 43 H 1.09006 * 109.47075 * 301.45861 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0791 -0.7955 -1.2138 5 6 3.4666 -1.2455 -0.6860 6 7 3.2446 -1.5507 0.7390 7 6 3.9924 -2.3835 1.4898 8 8 3.7193 -2.5561 2.6596 9 6 5.1571 -3.0941 0.8821 10 8 5.4305 -2.9212 -0.2876 11 7 5.9047 -3.9273 1.6327 12 6 7.0512 -4.5057 1.0978 13 6 7.8801 -5.2777 1.9157 14 6 9.0226 -5.8529 1.3809 15 6 9.3050 -5.6472 0.0422 16 6 8.4344 -4.8557 -0.7272 17 6 8.7127 -4.6319 -2.0948 18 1 9.5941 -5.0648 -2.5443 19 6 7.8425 -3.8538 -2.8681 20 7 6.7729 -3.3338 -2.3252 21 14 8.2107 -3.5574 -4.6754 22 1 7.5806 -4.6268 -5.4907 23 1 7.6641 -2.2380 -5.0821 24 1 9.6800 -3.5720 -4.8901 25 7 7.3422 -4.3180 -0.1753 26 6 2.0760 -0.7911 1.2073 27 1 2.3741 -0.1023 1.9978 28 6 1.0049 -1.7522 1.7270 29 1 -0.3634 0.4627 0.9175 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0261 -0.0582 32 1 1.4453 -1.6536 -1.4375 33 1 2.1845 -0.1520 -2.0872 34 1 4.1948 -0.4414 -0.7928 35 1 3.8033 -2.1361 -1.2167 36 1 5.6432 -4.1237 2.5459 37 1 7.6332 -5.4246 2.9567 38 1 9.6765 -6.4535 1.9958 39 1 10.1851 -6.0854 -0.4049 40 1 6.1703 -2.7945 -2.8608 41 1 1.4018 -2.3166 2.5709 42 1 0.1320 -1.1840 2.0483 43 1 0.7179 -2.4407 0.9322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889984000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:28 Heat of formation + Delta-G solvation = -21.390502 kcal Electronic energy + Delta-G solvation = -27175.259396 eV Core-core repulsion = 23413.871771 eV Total energy + Delta-G solvation = -3761.387625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95146 -40.65415 -39.34415 -38.65252 -36.13955 -34.98163 -34.05253 -32.27900 -32.15562 -31.07798 -28.93518 -27.61673 -26.44351 -25.50391 -23.90673 -23.36416 -22.45767 -20.89816 -20.08408 -19.62366 -18.59462 -18.08410 -17.55684 -17.21028 -16.58113 -16.42595 -16.29950 -15.74887 -15.45743 -15.42570 -14.87276 -14.68424 -14.58547 -14.25264 -13.91642 -13.78656 -13.76179 -13.47620 -13.06854 -12.89127 -12.84060 -12.74302 -12.57062 -12.52063 -12.32784 -12.26906 -11.76490 -11.71854 -11.60249 -11.50295 -11.38012 -10.91585 -10.45737 -9.94123 -9.85170 -9.17584 -8.92003 -8.08105 -6.42423 0.37389 1.02725 1.26238 1.31290 1.43285 1.53856 1.56624 2.28267 2.35786 2.50426 2.98376 3.31601 3.58729 3.60610 3.88360 4.01371 4.17820 4.29027 4.32094 4.36353 4.55900 4.60683 4.66582 4.79430 4.80607 4.83966 4.89444 4.93464 4.94282 5.00187 5.10783 5.11697 5.18322 5.28291 5.31630 5.35123 5.52870 5.63379 5.72341 5.89544 6.04876 6.16124 6.26550 6.47874 6.69292 6.83132 7.03938 7.29263 8.24659 8.56190 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.004632 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.925997 B = 6043.803983 C = 7976.220587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.097 0.903 4 C -0.120 4.120 5 C 0.092 3.908 6 N -0.583 5.583 7 C 0.524 3.476 8 O -0.548 6.548 9 C 0.458 3.542 10 O -0.408 6.408 11 N -0.635 5.635 12 C 0.348 3.652 13 C -0.345 4.345 14 C -0.033 4.033 15 C -0.323 4.323 16 C 0.238 3.762 17 C -0.461 4.461 18 H 0.087 0.913 19 C 0.015 3.985 20 N -0.691 5.691 21 Si 0.975 3.025 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.260 1.260 25 N -0.505 5.505 26 C 0.126 3.874 27 H 0.075 0.925 28 C -0.157 4.157 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.423 0.577 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.274 0.726 41 H 0.042 0.958 42 H 0.097 0.903 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 7.885 2.158 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.158 4.158 5 C -0.030 4.030 6 N -0.317 5.317 7 C 0.307 3.693 8 O -0.427 6.427 9 C 0.236 3.764 10 O -0.272 6.272 11 N -0.284 5.284 12 C 0.110 3.890 13 C -0.370 4.370 14 C -0.057 4.057 15 C -0.346 4.346 16 C 0.112 3.888 17 C -0.491 4.491 18 H 0.105 0.895 19 C -0.210 4.210 20 N -0.310 5.310 21 Si 0.796 3.204 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.184 1.184 25 N -0.225 5.225 26 C 0.025 3.975 27 H 0.093 0.907 28 C -0.214 4.214 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.260 0.740 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.115 0.885 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.875 8.587 1.364 16.374 hybrid contribution 1.033 -0.766 0.480 1.373 sum -12.842 7.821 1.844 15.148 Atomic orbital electron populations 1.21839 0.91868 1.02732 1.03094 1.22286 0.97805 0.98936 0.91915 0.88458 1.22960 0.93569 1.00746 0.98492 1.22753 0.98926 1.01867 0.79417 1.48470 1.28667 1.41892 1.12649 1.19893 0.83370 0.80284 0.85722 1.90661 1.71140 1.64529 1.16389 1.20684 0.85096 0.82631 0.87948 1.91154 1.65090 1.57511 1.13468 1.42998 1.23495 1.44817 1.17118 1.18991 0.86638 0.91801 0.91531 1.20943 1.01656 1.13969 1.00425 1.21031 0.94945 0.95495 0.94221 1.21851 1.04761 1.11819 0.96132 1.18852 0.87184 0.88458 0.94279 1.19913 1.08318 1.27624 0.93283 0.89539 1.26963 0.94672 0.94989 1.04410 1.70456 1.06658 1.17295 1.36618 0.85323 0.79647 0.78327 0.77098 1.19185 1.19384 1.18368 1.68601 1.19910 1.26148 1.07800 1.21992 0.84553 0.93005 0.97987 0.90725 1.22168 0.98729 0.99617 1.00907 0.91173 0.90886 0.92096 0.90390 0.87694 0.91460 0.90284 0.73966 0.85464 0.84348 0.87363 0.91490 0.93838 0.88482 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 7.99 71.98 0.58 -0.98 16 2 C -0.09 -1.45 3.47 -9.60 -0.03 -1.48 16 3 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.12 -2.26 6.54 32.06 0.21 -2.05 16 5 C 0.09 2.64 6.08 86.93 0.53 3.17 16 6 N -0.58 -17.87 3.08 -789.29 -2.43 -20.30 16 7 C 0.52 19.52 7.69 87.24 0.67 20.20 16 8 O -0.55 -21.03 15.38 -3.27 -0.05 -21.08 16 9 C 0.46 20.06 7.81 87.24 0.68 20.74 16 10 O -0.41 -20.07 9.54 -3.27 -0.03 -20.10 16 11 N -0.63 -27.48 5.37 -309.71 -1.66 -29.14 16 12 C 0.35 17.41 7.42 133.31 0.99 18.40 16 13 C -0.34 -15.30 9.95 22.72 0.23 -15.07 16 14 C -0.03 -1.44 10.15 22.39 0.23 -1.22 16 15 C -0.32 -16.16 9.83 22.87 0.22 -15.94 16 16 C 0.24 13.50 6.55 40.20 0.26 13.76 16 17 C -0.46 -25.47 9.14 23.47 0.21 -25.26 16 18 H 0.09 4.49 7.85 -2.91 -0.02 4.46 16 19 C 0.02 0.80 5.50 85.29 0.47 1.27 16 20 N -0.69 -37.32 8.99 21.84 0.20 -37.13 16 21 Si 0.97 38.72 29.56 68.60 2.03 40.75 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 N -0.50 -28.69 5.73 -186.43 -1.07 -29.76 16 26 C 0.13 2.88 3.43 45.34 0.16 3.04 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 C -0.16 -3.34 7.93 71.98 0.57 -2.77 16 29 H 0.07 0.66 7.59 -2.39 -0.02 0.64 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.74 6.61 -2.39 -0.02 0.72 16 32 H 0.08 1.47 8.02 -2.39 -0.02 1.45 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.81 6.14 -2.39 -0.01 2.80 16 36 H 0.42 15.62 8.18 -92.71 -0.76 14.86 16 37 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 40 H 0.27 13.60 8.29 -92.71 -0.77 12.83 16 41 H 0.04 1.17 6.74 -2.39 -0.02 1.15 16 42 H 0.10 1.47 6.70 -2.39 -0.02 1.45 16 43 H 0.06 1.22 7.53 -2.38 -0.02 1.20 16 Total: -1.00 -69.32 347.00 3.24 -66.08 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.29 Total: 34.88 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 5.97 Total: 15.81 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.97 Total: -116.33 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.08 Total: -41.18 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -69.32 3.24 -66.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889984000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.686 kcal (2) G-P(sol) polarization free energy of solvation -69.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds