Wall clock time and date at job start Tue Mar 31 2020 12:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.64049 * 2 1 4 4 C 1.55156 * 110.72073 * 123.14583 * 2 1 3 5 5 C 1.54902 * 101.58469 * 153.86196 * 4 2 1 6 6 N 1.47429 * 104.83359 * 322.98972 * 5 4 2 7 7 C 1.34776 * 125.65144 * 204.09097 * 6 5 4 8 8 O 1.21359 * 120.00014 * 180.02562 * 7 6 5 9 9 C 1.49371 * 119.99730 * 0.02562 * 7 6 5 10 10 O 1.21357 * 119.99901 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99730 * 179.97438 * 9 7 6 12 12 C 1.39110 * 119.99572 * 174.87270 * 11 9 7 13 13 C 1.39712 * 119.57655 * 185.73303 * 12 11 9 14 14 C 1.38647 * 119.49456 * 179.72396 * 13 12 11 15 15 C 1.38346 * 118.67321 * 0.53441 * 14 13 12 16 16 C 1.40595 * 119.13277 * 359.72780 * 15 14 13 17 17 C 1.41332 * 119.78813 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99991 * 5.67098 * 17 16 15 19 19 C 1.40024 * 120.00413 * 185.67465 * 17 16 15 20 20 N 1.30745 * 120.00099 * 354.92561 * 19 17 16 21 21 Si 1.86803 * 120.00201 * 174.92736 * 19 17 16 22 22 H 1.48498 * 109.47440 * 94.99725 * 21 19 17 23 23 H 1.48507 * 109.47093 * 214.99916 * 21 19 17 24 24 H 1.48500 * 109.46937 * 334.99430 * 21 19 17 25 25 N 1.31929 * 119.58243 * 5.99770 * 12 11 9 26 26 C 1.47323 * 108.73184 * 24.28472 * 6 5 4 27 27 H 1.09000 * 110.06404 * 118.13291 * 26 6 5 28 28 C 1.53004 * 109.84862 * 239.38761 * 26 6 5 29 29 H 1.08998 * 109.47057 * 300.70613 * 1 2 3 30 30 H 1.09008 * 109.47001 * 60.70055 * 1 2 3 31 31 H 1.08994 * 109.47507 * 180.69985 * 1 2 3 32 32 H 1.09003 * 111.00053 * 271.93960 * 4 2 1 33 33 H 1.08999 * 111.00225 * 35.74996 * 4 2 1 34 34 H 1.08998 * 110.36756 * 81.82515 * 5 4 2 35 35 H 1.09000 * 110.37029 * 204.15018 * 5 4 2 36 36 H 0.96996 * 119.99896 * 354.86780 * 11 9 7 37 37 H 1.08007 * 120.25031 * 359.97438 * 13 12 11 38 38 H 1.08006 * 120.66522 * 180.23749 * 14 13 12 39 39 H 1.07997 * 120.43581 * 179.75359 * 15 14 13 40 40 H 0.96996 * 119.99991 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.47313 * 177.60766 * 28 26 6 42 42 H 1.09004 * 109.47320 * 297.61051 * 28 26 6 43 43 H 1.09004 * 109.46983 * 57.59996 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7935 1.2151 5 6 3.4632 -1.2487 0.6896 6 7 3.2445 -1.5521 -0.7365 7 6 3.9922 -2.3862 -1.4859 8 8 3.7190 -2.5610 -2.6553 9 6 5.1572 -3.0955 -0.8770 10 8 5.4307 -2.9204 0.2924 11 7 5.9047 -3.9301 -1.6262 12 6 7.0510 -4.5077 -1.0902 13 6 7.8842 -5.2745 -1.9087 14 6 9.0293 -5.8447 -1.3741 15 6 9.3072 -5.6440 -0.0338 16 6 8.4265 -4.8668 0.7390 17 6 8.6967 -4.6533 2.1097 18 1 9.6219 -5.0082 2.5394 19 6 7.7650 -3.9818 2.9107 20 7 6.6915 -3.4654 2.3719 21 14 8.0558 -3.8236 4.7492 22 1 8.7104 -2.5221 5.0367 23 1 6.7558 -3.8925 5.4637 24 1 8.9324 -4.9308 5.2087 25 7 7.3349 -4.3289 0.1857 26 6 2.0760 -0.7891 -1.2086 27 1 2.3741 -0.0990 -1.9980 28 6 1.0048 -1.7492 -1.7301 29 1 -0.3633 0.5248 0.8836 30 1 -0.3633 0.5029 -0.8963 31 1 -0.3634 -1.0275 0.0126 32 1 2.1850 -0.1484 2.0873 33 1 1.4448 -1.6508 1.4406 34 1 4.1931 -0.4467 0.7991 35 1 3.7960 -2.1407 1.2204 36 1 5.6432 -4.1279 -2.5391 37 1 7.6401 -5.4186 -2.9509 38 1 9.6887 -6.4377 -1.9905 39 1 10.1893 -6.0782 0.4131 40 1 6.0459 -3.0005 2.9269 41 1 0.1270 -1.1814 -2.0382 42 1 1.3973 -2.3028 -2.5831 43 1 0.7273 -2.4475 -0.9404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889984002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:37 Heat of formation + Delta-G solvation = -3.995742 kcal Electronic energy + Delta-G solvation = -27165.850633 eV Core-core repulsion = 23405.217301 eV Total energy + Delta-G solvation = -3760.633332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55132 -39.10445 -37.83016 -37.08540 -34.40213 -33.28407 -32.80545 -31.18560 -30.38388 -29.22158 -27.96440 -25.79400 -25.27349 -24.22637 -22.57185 -21.60404 -20.86122 -19.51420 -18.89001 -17.98551 -17.06338 -16.46418 -16.05480 -15.90416 -15.28141 -14.72151 -14.49689 -14.28729 -14.13228 -13.80355 -13.60984 -13.41706 -13.12609 -12.90256 -12.83167 -12.54470 -12.21797 -12.02349 -11.97642 -11.91081 -11.51668 -11.21865 -11.17911 -11.00203 -10.78973 -10.70084 -10.59735 -10.52693 -10.46384 -9.98808 -9.77665 -9.09085 -8.85639 -8.58840 -8.03417 -7.31794 -7.05169 -6.23602 -4.45382 1.96553 2.69450 2.82178 3.08704 3.12864 3.15384 3.23328 3.92988 3.97993 4.01096 4.37115 4.54006 4.67308 4.85669 4.98088 5.09938 5.23395 5.27222 5.28876 5.50260 5.55073 5.61157 5.72973 5.86481 5.92877 5.96300 5.99059 6.06581 6.11878 6.18693 6.27081 6.43797 6.44831 6.58288 6.76485 6.79453 7.16687 7.39264 7.50330 7.52811 7.76088 7.86546 8.04865 8.18875 8.37764 8.64219 8.93854 9.02381 10.14197 10.40342 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.004622 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.254113 B = 6056.999544 C = 7983.593323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.131 4.131 5 C 0.096 3.904 6 N -0.590 5.590 7 C 0.522 3.478 8 O -0.536 6.536 9 C 0.469 3.531 10 O -0.383 6.383 11 N -0.639 5.639 12 C 0.369 3.631 13 C -0.348 4.348 14 C -0.036 4.036 15 C -0.301 4.301 16 C 0.272 3.728 17 C -0.425 4.425 18 H 0.083 0.917 19 C 0.061 3.939 20 N -0.663 5.663 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.263 1.263 25 N -0.474 5.474 26 C 0.137 3.863 27 H 0.075 0.925 28 C -0.163 4.163 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.411 0.589 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.270 0.730 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 6.854 -2.283 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.169 4.169 5 C -0.026 4.026 6 N -0.325 5.325 7 C 0.306 3.694 8 O -0.413 6.413 9 C 0.245 3.755 10 O -0.246 6.246 11 N -0.287 5.287 12 C 0.131 3.869 13 C -0.374 4.374 14 C -0.060 4.060 15 C -0.324 4.324 16 C 0.147 3.853 17 C -0.455 4.455 18 H 0.101 0.899 19 C -0.168 4.168 20 N -0.282 5.282 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.187 1.187 25 N -0.193 5.193 26 C 0.034 3.966 27 H 0.093 0.907 28 C -0.221 4.221 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.246 0.754 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.423 7.522 -1.454 14.596 hybrid contribution 0.571 -0.477 -0.323 0.811 sum -11.852 7.045 -1.777 13.902 Atomic orbital electron populations 1.21858 0.93941 1.02441 1.01705 1.22263 0.96317 0.99160 0.94393 0.89809 1.22937 0.96409 1.00152 0.97380 1.22696 0.96400 1.03401 0.80077 1.48420 1.28796 1.43023 1.12245 1.20506 0.83637 0.79499 0.85781 1.90673 1.70836 1.63617 1.16213 1.20064 0.84503 0.82859 0.88030 1.91144 1.64330 1.56795 1.12351 1.42994 1.24202 1.44908 1.16645 1.18542 0.85421 0.91276 0.91660 1.20522 1.02164 1.15661 0.99045 1.20585 0.94707 0.96050 0.94698 1.21657 1.04445 1.11361 0.94910 1.18363 0.86270 0.87481 0.93190 1.19576 1.03487 1.30349 0.92124 0.89881 1.26142 0.95308 0.95153 1.00152 1.70322 1.04945 1.17696 1.35245 0.86486 0.78714 0.79455 0.83215 1.19717 1.20244 1.18682 1.68643 1.19731 1.24822 1.06147 1.21684 0.85603 0.92876 0.96441 0.90691 1.22215 0.98104 0.99719 1.02075 0.92404 0.92400 0.91822 0.89836 0.90609 0.90993 0.87173 0.75360 0.88743 0.88377 0.88390 0.91797 0.91473 0.91203 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 7.99 37.16 0.30 -0.76 16 2 C -0.10 -0.96 3.46 -88.78 -0.31 -1.27 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.35 6.54 -24.59 -0.16 -1.51 16 5 C 0.10 1.36 6.06 -2.53 -0.02 1.35 16 6 N -0.59 -9.01 3.09 -163.32 -0.50 -9.52 16 7 C 0.52 9.51 7.70 -11.62 -0.09 9.42 16 8 O -0.54 -10.18 15.39 5.49 0.08 -10.10 16 9 C 0.47 9.88 7.81 -11.62 -0.09 9.79 16 10 O -0.38 -8.99 9.61 5.49 0.05 -8.93 16 11 N -0.64 -13.53 5.37 -11.83 -0.06 -13.60 16 12 C 0.37 9.06 7.42 -155.10 -1.15 7.91 16 13 C -0.35 -7.89 9.96 -38.88 -0.39 -8.28 16 14 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 15 C -0.30 -7.44 9.83 -38.65 -0.38 -7.82 16 16 C 0.27 7.47 6.55 -85.00 -0.56 6.92 16 17 C -0.42 -11.34 9.13 -37.74 -0.34 -11.68 16 18 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 19 C 0.06 1.54 5.49 -17.34 -0.10 1.44 16 20 N -0.66 -17.25 9.08 55.55 0.50 -16.74 16 21 Si 0.90 18.47 29.56 -169.99 -5.03 13.45 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 25 N -0.47 -13.02 5.74 -10.28 -0.06 -13.08 16 26 C 0.14 1.66 3.46 -66.79 -0.23 1.43 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 C -0.16 -1.87 7.90 37.16 0.29 -1.57 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 7.71 -51.92 -0.40 -0.01 16 31 H 0.06 0.49 6.50 -51.93 -0.34 0.16 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.78 8.05 -51.93 -0.42 0.37 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 1.86 6.16 -51.93 -0.32 1.54 16 36 H 0.41 7.53 8.18 -40.82 -0.33 7.20 16 37 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 38 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.27 6.45 8.29 -40.82 -0.34 6.12 16 41 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 42 H 0.07 0.96 6.77 -51.93 -0.35 0.61 16 43 H 0.06 0.67 7.56 -51.93 -0.39 0.28 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -30.66 347.25 -9.23 -39.89 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.83 Total: 9.25 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.62 Total: 4.14 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.12 Total: -52.93 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.14 Total: -19.03 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.66 -9.23 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889984002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.890 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds