Wall clock time and date at job start Tue Mar 31 2020 12:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.64049 * 2 1 4 4 C 1.55156 * 110.72073 * 123.14583 * 2 1 3 5 5 C 1.54902 * 101.58469 * 153.86196 * 4 2 1 6 6 N 1.47429 * 104.83359 * 322.98972 * 5 4 2 7 7 C 1.34776 * 125.65144 * 204.09097 * 6 5 4 8 8 O 1.21359 * 120.00014 * 180.02562 * 7 6 5 9 9 C 1.49371 * 119.99730 * 0.02562 * 7 6 5 10 10 O 1.21357 * 119.99901 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99730 * 179.97438 * 9 7 6 12 12 C 1.39110 * 119.99572 * 174.87270 * 11 9 7 13 13 C 1.39712 * 119.57655 * 185.73303 * 12 11 9 14 14 C 1.38647 * 119.49456 * 179.72396 * 13 12 11 15 15 C 1.38346 * 118.67321 * 0.53441 * 14 13 12 16 16 C 1.40595 * 119.13277 * 359.72780 * 15 14 13 17 17 C 1.41332 * 119.78813 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99991 * 5.67098 * 17 16 15 19 19 C 1.40024 * 120.00413 * 185.67465 * 17 16 15 20 20 N 1.30745 * 120.00099 * 354.92561 * 19 17 16 21 21 Si 1.86803 * 120.00201 * 174.92736 * 19 17 16 22 22 H 1.48498 * 109.47440 * 94.99725 * 21 19 17 23 23 H 1.48507 * 109.47093 * 214.99916 * 21 19 17 24 24 H 1.48500 * 109.46937 * 334.99430 * 21 19 17 25 25 N 1.31929 * 119.58243 * 5.99770 * 12 11 9 26 26 C 1.47323 * 108.73184 * 24.28472 * 6 5 4 27 27 H 1.09000 * 110.06404 * 118.13291 * 26 6 5 28 28 C 1.53004 * 109.84862 * 239.38761 * 26 6 5 29 29 H 1.08998 * 109.47057 * 300.70613 * 1 2 3 30 30 H 1.09008 * 109.47001 * 60.70055 * 1 2 3 31 31 H 1.08994 * 109.47507 * 180.69985 * 1 2 3 32 32 H 1.09003 * 111.00053 * 271.93960 * 4 2 1 33 33 H 1.08999 * 111.00225 * 35.74996 * 4 2 1 34 34 H 1.08998 * 110.36756 * 81.82515 * 5 4 2 35 35 H 1.09000 * 110.37029 * 204.15018 * 5 4 2 36 36 H 0.96996 * 119.99896 * 354.86780 * 11 9 7 37 37 H 1.08007 * 120.25031 * 359.97438 * 13 12 11 38 38 H 1.08006 * 120.66522 * 180.23749 * 14 13 12 39 39 H 1.07997 * 120.43581 * 179.75359 * 15 14 13 40 40 H 0.96996 * 119.99991 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.47313 * 177.60766 * 28 26 6 42 42 H 1.09004 * 109.47320 * 297.61051 * 28 26 6 43 43 H 1.09004 * 109.46983 * 57.59996 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7935 1.2151 5 6 3.4632 -1.2487 0.6896 6 7 3.2445 -1.5521 -0.7365 7 6 3.9922 -2.3862 -1.4859 8 8 3.7190 -2.5610 -2.6553 9 6 5.1572 -3.0955 -0.8770 10 8 5.4307 -2.9204 0.2924 11 7 5.9047 -3.9301 -1.6262 12 6 7.0510 -4.5077 -1.0902 13 6 7.8842 -5.2745 -1.9087 14 6 9.0293 -5.8447 -1.3741 15 6 9.3072 -5.6440 -0.0338 16 6 8.4265 -4.8668 0.7390 17 6 8.6967 -4.6533 2.1097 18 1 9.6219 -5.0082 2.5394 19 6 7.7650 -3.9818 2.9107 20 7 6.6915 -3.4654 2.3719 21 14 8.0558 -3.8236 4.7492 22 1 8.7104 -2.5221 5.0367 23 1 6.7558 -3.8925 5.4637 24 1 8.9324 -4.9308 5.2087 25 7 7.3349 -4.3289 0.1857 26 6 2.0760 -0.7891 -1.2086 27 1 2.3741 -0.0990 -1.9980 28 6 1.0048 -1.7492 -1.7301 29 1 -0.3633 0.5248 0.8836 30 1 -0.3633 0.5029 -0.8963 31 1 -0.3634 -1.0275 0.0126 32 1 2.1850 -0.1484 2.0873 33 1 1.4448 -1.6508 1.4406 34 1 4.1931 -0.4467 0.7991 35 1 3.7960 -2.1407 1.2204 36 1 5.6432 -4.1279 -2.5391 37 1 7.6401 -5.4186 -2.9509 38 1 9.6887 -6.4377 -1.9905 39 1 10.1893 -6.0782 0.4131 40 1 6.0459 -3.0005 2.9269 41 1 0.1270 -1.1814 -2.0382 42 1 1.3973 -2.3028 -2.5831 43 1 0.7273 -2.4475 -0.9404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889984002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:36 Heat of formation + Delta-G solvation = -21.910317 kcal Electronic energy + Delta-G solvation = -27166.627467 eV Core-core repulsion = 23405.217301 eV Total energy + Delta-G solvation = -3761.410166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.94340 -40.64917 -39.34282 -38.65245 -36.14001 -34.98371 -34.05208 -32.28240 -32.16599 -31.07922 -28.93778 -27.61947 -26.44222 -25.50610 -23.90230 -23.36427 -22.45560 -20.89546 -20.08423 -19.62302 -18.59230 -18.08046 -17.55899 -17.21125 -16.57808 -16.42784 -16.30187 -15.75580 -15.45964 -15.42090 -14.86956 -14.68859 -14.59449 -14.25971 -13.92018 -13.78881 -13.76183 -13.47349 -13.06459 -12.90363 -12.85031 -12.74027 -12.57617 -12.52209 -12.32278 -12.25929 -11.77081 -11.71768 -11.59165 -11.50859 -11.37850 -10.91383 -10.45688 -9.94269 -9.85391 -9.17889 -8.91961 -8.09212 -6.42428 0.37291 1.02457 1.26104 1.30860 1.43183 1.53006 1.57379 2.28144 2.35748 2.50037 2.97666 3.31680 3.59040 3.60848 3.88149 4.00728 4.17601 4.28946 4.32115 4.36446 4.55852 4.60596 4.66491 4.79207 4.80445 4.84159 4.90194 4.93451 4.94349 5.00024 5.10539 5.11107 5.18303 5.28263 5.31315 5.34820 5.52929 5.63255 5.72002 5.89380 6.04901 6.16006 6.26345 6.47695 6.69300 6.83078 7.03665 7.28910 8.24415 8.55746 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.004622 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.254113 B = 6056.999544 C = 7983.593323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.097 0.903 4 C -0.120 4.120 5 C 0.093 3.907 6 N -0.584 5.584 7 C 0.524 3.476 8 O -0.548 6.548 9 C 0.459 3.541 10 O -0.409 6.409 11 N -0.635 5.635 12 C 0.348 3.652 13 C -0.344 4.344 14 C -0.033 4.033 15 C -0.322 4.322 16 C 0.238 3.762 17 C -0.461 4.461 18 H 0.086 0.914 19 C 0.016 3.984 20 N -0.692 5.692 21 Si 0.975 3.025 22 H -0.267 1.267 23 H -0.270 1.270 24 H -0.259 1.259 25 N -0.505 5.505 26 C 0.127 3.873 27 H 0.076 0.924 28 C -0.156 4.156 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.423 0.577 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.274 0.726 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.184 7.830 -2.210 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.115 0.885 4 C -0.158 4.158 5 C -0.029 4.029 6 N -0.317 5.317 7 C 0.307 3.693 8 O -0.427 6.427 9 C 0.237 3.763 10 O -0.273 6.273 11 N -0.284 5.284 12 C 0.110 3.890 13 C -0.369 4.369 14 C -0.057 4.057 15 C -0.345 4.345 16 C 0.112 3.888 17 C -0.492 4.492 18 H 0.105 0.895 19 C -0.210 4.210 20 N -0.312 5.312 21 Si 0.796 3.204 22 H -0.192 1.192 23 H -0.195 1.195 24 H -0.183 1.183 25 N -0.225 5.225 26 C 0.025 3.975 27 H 0.094 0.906 28 C -0.214 4.214 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.260 0.740 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.062 0.938 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.891 8.510 -1.411 16.352 hybrid contribution 1.013 -0.787 -0.468 1.365 sum -12.878 7.723 -1.879 15.133 Atomic orbital electron populations 1.21851 0.91893 1.02751 1.03113 1.22280 0.97807 0.98969 0.91904 0.88455 1.22917 0.93614 1.00740 0.98500 1.22700 0.98952 1.01855 0.79400 1.48552 1.28835 1.41786 1.12559 1.19891 0.83363 0.80282 0.85733 1.90662 1.71140 1.64506 1.16412 1.20685 0.85105 0.82628 0.87904 1.91149 1.65213 1.57496 1.13480 1.42998 1.23495 1.44758 1.17178 1.18990 0.86649 0.91827 0.91523 1.20950 1.01501 1.14072 1.00400 1.21037 0.94971 0.95478 0.94225 1.21857 1.04747 1.11807 0.96086 1.18855 0.87181 0.88493 0.94226 1.19904 1.04462 1.32067 0.92765 0.89540 1.26962 0.94775 0.94421 1.04814 1.70462 1.05619 1.18054 1.37029 0.85307 0.78740 0.79423 0.76917 1.19155 1.19458 1.18305 1.68599 1.20318 1.25862 1.07687 1.22047 0.84531 0.92958 0.97957 0.90611 1.22170 0.98755 0.99609 1.00872 0.90903 0.91154 0.92063 0.87659 0.90441 0.91486 0.90313 0.73959 0.85444 0.84327 0.87345 0.91527 0.88439 0.93814 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.99 71.98 0.57 -0.99 16 2 C -0.09 -1.45 3.46 -9.60 -0.03 -1.48 16 3 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 4 C -0.12 -2.27 6.54 31.98 0.21 -2.06 16 5 C 0.09 2.66 6.06 86.85 0.53 3.19 16 6 N -0.58 -17.89 3.09 -788.99 -2.44 -20.33 16 7 C 0.52 19.53 7.70 87.24 0.67 20.20 16 8 O -0.55 -21.02 15.39 -3.28 -0.05 -21.07 16 9 C 0.46 20.09 7.81 87.24 0.68 20.77 16 10 O -0.41 -20.16 9.61 -3.27 -0.03 -20.19 16 11 N -0.63 -27.48 5.37 -309.71 -1.66 -29.15 16 12 C 0.35 17.39 7.42 133.31 0.99 18.38 16 13 C -0.34 -15.26 9.96 22.72 0.23 -15.03 16 14 C -0.03 -1.45 10.15 22.39 0.23 -1.22 16 15 C -0.32 -16.12 9.83 22.87 0.22 -15.89 16 16 C 0.24 13.51 6.55 40.20 0.26 13.77 16 17 C -0.46 -25.52 9.13 23.46 0.21 -25.30 16 18 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 19 C 0.02 0.83 5.49 85.29 0.47 1.30 16 20 N -0.69 -37.44 9.08 21.84 0.20 -37.24 16 21 Si 0.98 38.75 29.56 68.60 2.03 40.78 16 22 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 N -0.50 -28.71 5.74 -186.43 -1.07 -29.78 16 26 C 0.13 2.88 3.46 45.28 0.16 3.04 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 C -0.16 -3.33 7.90 71.98 0.57 -2.76 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.65 7.71 -2.38 -0.02 0.64 16 31 H 0.06 0.75 6.50 -2.39 -0.02 0.73 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.47 8.05 -2.39 -0.02 1.45 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.81 6.16 -2.39 -0.01 2.79 16 36 H 0.42 15.62 8.18 -92.71 -0.76 14.86 16 37 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.14 4.87 8.06 -2.91 -0.02 4.84 16 39 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 40 H 0.27 13.60 8.29 -92.71 -0.77 12.83 16 41 H 0.10 1.47 6.70 -2.39 -0.02 1.45 16 42 H 0.04 1.17 6.77 -2.38 -0.02 1.15 16 43 H 0.06 1.21 7.56 -2.39 -0.02 1.19 16 Total: -1.00 -69.42 347.25 3.23 -66.19 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.29 Total: 34.87 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 5.97 Total: 15.91 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.97 Total: -116.50 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.08 Total: -41.26 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -69.42 3.23 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889984002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.282 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds