Wall clock time and date at job start Tue Mar 31 2020 12:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99877 * 2 1 4 4 C 1.54330 * 109.99162 * 238.95652 * 2 1 3 5 5 H 1.09006 * 110.52003 * 336.98086 * 4 2 1 6 6 C 1.53005 * 111.00151 * 100.12959 * 4 2 1 7 7 C 1.55159 * 103.02470 * 218.66506 * 4 2 1 8 8 C 1.54917 * 101.57485 * 35.31008 * 7 4 2 9 9 N 1.47021 * 109.88288 * 121.09366 * 2 1 3 10 10 C 1.34779 * 125.64666 * 298.39636 * 9 2 1 11 11 O 1.21360 * 120.00185 * 359.71532 * 10 9 2 12 12 C 1.49368 * 120.00195 * 179.71559 * 10 9 2 13 13 O 1.21358 * 119.99739 * 359.71974 * 12 10 9 14 14 N 1.34779 * 120.00195 * 179.97438 * 12 10 9 15 15 C 1.39109 * 119.99844 * 174.23766 * 14 12 10 16 16 C 1.39706 * 119.58244 * 340.89070 * 15 14 12 17 17 C 1.38649 * 119.49581 * 180.02562 * 16 15 14 18 18 C 1.38343 * 118.67068 * 0.02562 * 17 16 15 19 19 C 1.40596 * 119.13721 * 0.02562 * 18 17 16 20 20 C 1.41343 * 119.78579 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99712 * 6.46570 * 20 19 18 22 22 C 1.40024 * 119.99730 * 186.47073 * 20 19 18 23 23 N 1.30744 * 120.00376 * 353.71124 * 22 20 19 24 24 Si 1.86803 * 119.99697 * 173.70560 * 22 20 19 25 25 H 1.48500 * 109.46902 * 94.98987 * 24 22 20 26 26 H 1.48499 * 109.47109 * 214.98305 * 24 22 20 27 27 H 1.48498 * 109.47212 * 334.99052 * 24 22 20 28 28 N 1.31940 * 119.57549 * 160.62772 * 15 14 12 29 29 H 1.09001 * 109.47147 * 300.36128 * 1 2 3 30 30 H 1.09000 * 109.46812 * 60.36432 * 1 2 3 31 31 H 1.09000 * 109.47182 * 180.35937 * 1 2 3 32 32 H 1.09001 * 109.47368 * 175.23822 * 6 4 2 33 33 H 1.08999 * 109.46695 * 295.23494 * 6 4 2 34 34 H 1.08998 * 109.47148 * 55.23420 * 6 4 2 35 35 H 1.08994 * 111.00638 * 277.24068 * 7 4 2 36 36 H 1.08994 * 111.04027 * 153.39344 * 7 4 2 37 37 H 1.09010 * 110.36092 * 204.15374 * 8 7 4 38 38 H 1.08994 * 110.46152 * 81.88117 * 8 7 4 39 39 H 0.96998 * 119.99944 * 354.23698 * 14 12 10 40 40 H 1.08002 * 120.25049 * 0.02913 * 16 15 14 41 41 H 1.08000 * 120.66552 * 180.02562 * 17 16 15 42 42 H 1.08007 * 120.43030 * 179.97438 * 18 17 16 43 43 H 0.97002 * 120.00148 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3053 -1.4408 -1.6196 6 6 2.4812 0.2354 -2.3356 7 6 3.2864 -1.5184 -0.6914 8 6 2.8098 -1.8825 0.7370 9 7 2.0300 -0.7140 1.1839 10 6 1.8074 -0.3619 2.4657 11 8 1.1470 0.6245 2.7181 12 6 2.3733 -1.1858 3.5757 13 8 3.0293 -2.1751 3.3234 14 7 2.1510 -0.8334 4.8575 15 6 2.5745 -1.6634 5.8904 16 6 2.8550 -3.0061 5.6253 17 6 3.2764 -3.8319 6.6563 18 6 3.4063 -3.2960 7.9251 19 6 3.1077 -1.9372 8.1281 20 6 3.2362 -1.3753 9.4187 21 1 3.6612 -1.9590 10.2219 22 6 2.8124 -0.0620 9.6558 23 7 2.4127 0.6858 8.6606 24 14 2.8179 0.6216 11.3943 25 1 4.0825 1.3634 11.6304 26 1 1.6649 1.5412 11.5682 27 1 2.7108 -0.4961 12.3661 28 7 2.7111 -1.1713 7.1069 29 1 -0.3633 0.5194 0.8867 30 1 -0.3633 0.5082 -0.8933 31 1 -0.3633 -1.0276 0.0064 32 1 2.9269 -0.3134 -3.1653 33 1 1.6079 0.7831 -2.6898 34 1 3.2104 0.9369 -1.9305 35 1 4.1670 -0.8770 -0.6577 36 1 3.4814 -2.4157 -1.2787 37 1 3.6655 -2.0411 1.3934 38 1 2.1806 -2.7722 0.7136 39 1 1.6959 -0.0011 5.0597 40 1 2.7444 -3.3979 4.6249 41 1 3.4988 -4.8727 6.4725 42 1 3.7320 -3.9136 8.7491 43 1 2.1188 1.5955 8.8250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889984003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:41 Heat of formation + Delta-G solvation = -20.207866 kcal Electronic energy + Delta-G solvation = -26355.993931 eV Core-core repulsion = 22594.657588 eV Total energy + Delta-G solvation = -3761.336342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.88055 -39.43893 -37.95817 -37.47626 -34.56389 -33.36574 -32.97829 -31.54737 -30.48504 -29.42412 -28.58708 -25.90267 -25.00105 -24.23245 -22.66391 -21.69952 -21.15369 -20.24536 -19.36492 -17.68857 -17.55410 -16.90522 -16.16751 -16.09794 -15.51081 -14.90653 -14.61853 -14.46470 -14.22117 -14.10272 -13.77634 -13.65208 -13.36779 -13.10667 -12.92111 -12.84164 -12.38558 -12.26479 -12.05280 -12.00458 -11.79252 -11.62818 -11.28898 -11.12842 -11.03239 -10.83864 -10.79387 -10.70993 -10.52453 -10.14264 -9.92260 -9.26068 -8.92607 -8.79162 -8.11930 -7.75477 -7.21328 -6.45759 -4.55225 1.52826 2.38877 2.72646 2.94228 3.08694 3.11547 3.20375 3.56172 3.68009 3.93534 4.20258 4.33093 4.52185 4.68168 4.74012 5.01150 5.05765 5.10575 5.14253 5.29491 5.39761 5.44240 5.65443 5.69773 5.73852 5.82437 5.83761 5.88766 5.99235 6.07926 6.09550 6.20908 6.33205 6.65287 6.68511 6.73860 7.08843 7.19490 7.33818 7.39253 7.62527 7.78313 7.92574 8.02351 8.21602 8.42795 8.65268 8.89250 9.96797 10.27769 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023421 B = 0.002992 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.229192 B = 9356.072994 C =10214.087296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.080 0.920 4 C -0.102 4.102 5 H 0.087 0.913 6 C -0.141 4.141 7 C -0.132 4.132 8 C 0.096 3.904 9 N -0.590 5.590 10 C 0.526 3.474 11 O -0.517 6.517 12 C 0.507 3.493 13 O -0.500 6.500 14 N -0.612 5.612 15 C 0.353 3.647 16 C -0.311 4.311 17 C -0.049 4.049 18 C -0.283 4.283 19 C 0.277 3.723 20 C -0.432 4.432 21 H 0.087 0.913 22 C 0.070 3.930 23 N -0.719 5.719 24 Si 0.908 3.092 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.261 1.261 28 N -0.502 5.502 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.419 0.581 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 -0.792 -18.222 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.098 0.902 4 C -0.121 4.121 5 H 0.105 0.895 6 C -0.199 4.199 7 C -0.170 4.170 8 C -0.027 4.027 9 N -0.325 5.325 10 C 0.309 3.691 11 O -0.393 6.393 12 C 0.288 3.712 13 O -0.375 6.375 14 N -0.257 5.257 15 C 0.118 3.882 16 C -0.336 4.336 17 C -0.073 4.073 18 C -0.306 4.306 19 C 0.151 3.849 20 C -0.464 4.464 21 H 0.105 0.895 22 C -0.156 4.156 23 N -0.340 5.340 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.185 1.185 28 N -0.221 5.221 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.257 0.743 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.527 0.169 -18.079 18.144 hybrid contribution -0.089 -0.107 0.735 0.748 sum -1.616 0.062 -17.344 17.419 Atomic orbital electron populations 1.22154 0.94432 1.02490 1.03133 1.21756 0.94813 0.96464 0.83618 0.90175 1.22320 0.97944 0.97646 0.94168 0.89483 1.21752 1.01532 0.98771 0.97810 1.22951 0.97719 1.00903 0.95475 1.22677 0.96913 0.87661 0.95406 1.48307 1.51570 1.28550 1.04070 1.19844 0.81305 0.85258 0.82683 1.90757 1.38814 1.26536 1.83160 1.19790 0.81835 0.85864 0.83755 1.90625 1.37697 1.26077 1.83127 1.42875 1.54878 1.24398 1.03592 1.18430 0.95074 0.86649 0.88013 1.21533 1.17892 0.93278 1.00893 1.20796 0.96200 0.97499 0.92835 1.21755 1.14957 0.97327 0.96561 1.18197 0.87951 0.87486 0.91255 1.19584 1.35207 0.97396 0.94217 0.89514 1.26065 0.93824 0.97003 0.98667 1.70104 1.25318 1.06819 1.31799 0.86300 0.78616 0.79434 0.82407 1.19519 1.20081 1.18464 1.68045 1.21139 1.36189 0.96730 0.90958 0.91543 0.92368 0.91978 0.92291 0.92268 0.90407 0.89633 0.87763 0.90919 0.74336 0.85239 0.88126 0.88028 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.11 37.16 0.34 -1.35 16 2 C 0.14 1.45 3.06 -66.95 -0.21 1.24 16 3 H 0.08 0.89 7.80 -51.93 -0.41 0.48 16 4 C -0.10 -0.78 3.07 -88.78 -0.27 -1.05 16 5 H 0.09 0.60 7.84 -51.93 -0.41 0.19 16 6 C -0.14 -0.86 9.16 37.16 0.34 -0.52 16 7 C -0.13 -1.06 6.54 -24.58 -0.16 -1.22 16 8 C 0.10 1.09 6.06 -2.53 -0.02 1.07 16 9 N -0.59 -7.91 3.06 -163.54 -0.50 -8.41 16 10 C 0.53 8.86 7.70 -11.62 -0.09 8.77 16 11 O -0.52 -9.58 15.53 5.49 0.09 -9.49 16 12 C 0.51 9.73 7.69 -11.62 -0.09 9.64 16 13 O -0.50 -9.86 10.58 5.49 0.06 -9.80 16 14 N -0.61 -13.23 5.39 -11.83 -0.06 -13.30 16 15 C 0.35 8.82 7.50 -155.09 -1.16 7.66 16 16 C -0.31 -7.42 8.83 -38.88 -0.34 -7.76 16 17 C -0.05 -1.12 10.15 -39.39 -0.40 -1.52 16 18 C -0.28 -7.00 9.83 -38.65 -0.38 -7.38 16 19 C 0.28 7.61 6.54 -84.99 -0.56 7.05 16 20 C -0.43 -11.48 9.13 -37.73 -0.34 -11.83 16 21 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 22 C 0.07 1.76 5.49 -17.35 -0.10 1.66 16 23 N -0.72 -18.97 11.49 55.55 0.64 -18.33 16 24 Si 0.91 18.52 29.56 -169.99 -5.03 13.49 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 28 N -0.50 -13.86 7.92 -10.28 -0.08 -13.94 16 29 H 0.07 0.93 6.89 -51.93 -0.36 0.57 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.38 8.11 -51.93 -0.42 -0.04 16 35 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.38 6.17 -51.92 -0.32 1.06 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.42 8.86 8.31 -40.82 -0.34 8.52 16 40 H 0.13 2.95 5.34 -52.50 -0.28 2.67 16 41 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 42 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 43 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -30.49 354.34 -8.86 -39.35 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.88 Total: 10.61 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -3.44 Total: 4.47 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.01 Total: -53.97 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.14 Total: -19.29 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.49 -8.86 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889984003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.144 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds