Wall clock time and date at job start Tue Mar 31 2020 12:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99877 * 2 1 4 4 C 1.54330 * 109.99162 * 238.95652 * 2 1 3 5 5 H 1.09006 * 110.52003 * 336.98086 * 4 2 1 6 6 C 1.53005 * 111.00151 * 100.12959 * 4 2 1 7 7 C 1.55159 * 103.02470 * 218.66506 * 4 2 1 8 8 C 1.54917 * 101.57485 * 35.31008 * 7 4 2 9 9 N 1.47021 * 109.88288 * 121.09366 * 2 1 3 10 10 C 1.34779 * 125.64666 * 298.39636 * 9 2 1 11 11 O 1.21360 * 120.00185 * 359.71532 * 10 9 2 12 12 C 1.49368 * 120.00195 * 179.71559 * 10 9 2 13 13 O 1.21358 * 119.99739 * 359.71974 * 12 10 9 14 14 N 1.34779 * 120.00195 * 179.97438 * 12 10 9 15 15 C 1.39109 * 119.99844 * 174.23766 * 14 12 10 16 16 C 1.39706 * 119.58244 * 340.89070 * 15 14 12 17 17 C 1.38649 * 119.49581 * 180.02562 * 16 15 14 18 18 C 1.38343 * 118.67068 * 0.02562 * 17 16 15 19 19 C 1.40596 * 119.13721 * 0.02562 * 18 17 16 20 20 C 1.41343 * 119.78579 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99712 * 6.46570 * 20 19 18 22 22 C 1.40024 * 119.99730 * 186.47073 * 20 19 18 23 23 N 1.30744 * 120.00376 * 353.71124 * 22 20 19 24 24 Si 1.86803 * 119.99697 * 173.70560 * 22 20 19 25 25 H 1.48500 * 109.46902 * 94.98987 * 24 22 20 26 26 H 1.48499 * 109.47109 * 214.98305 * 24 22 20 27 27 H 1.48498 * 109.47212 * 334.99052 * 24 22 20 28 28 N 1.31940 * 119.57549 * 160.62772 * 15 14 12 29 29 H 1.09001 * 109.47147 * 300.36128 * 1 2 3 30 30 H 1.09000 * 109.46812 * 60.36432 * 1 2 3 31 31 H 1.09000 * 109.47182 * 180.35937 * 1 2 3 32 32 H 1.09001 * 109.47368 * 175.23822 * 6 4 2 33 33 H 1.08999 * 109.46695 * 295.23494 * 6 4 2 34 34 H 1.08998 * 109.47148 * 55.23420 * 6 4 2 35 35 H 1.08994 * 111.00638 * 277.24068 * 7 4 2 36 36 H 1.08994 * 111.04027 * 153.39344 * 7 4 2 37 37 H 1.09010 * 110.36092 * 204.15374 * 8 7 4 38 38 H 1.08994 * 110.46152 * 81.88117 * 8 7 4 39 39 H 0.96998 * 119.99944 * 354.23698 * 14 12 10 40 40 H 1.08002 * 120.25049 * 0.02913 * 16 15 14 41 41 H 1.08000 * 120.66552 * 180.02562 * 17 16 15 42 42 H 1.08007 * 120.43030 * 179.97438 * 18 17 16 43 43 H 0.97002 * 120.00148 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3053 -1.4408 -1.6196 6 6 2.4812 0.2354 -2.3356 7 6 3.2864 -1.5184 -0.6914 8 6 2.8098 -1.8825 0.7370 9 7 2.0300 -0.7140 1.1839 10 6 1.8074 -0.3619 2.4657 11 8 1.1470 0.6245 2.7181 12 6 2.3733 -1.1858 3.5757 13 8 3.0293 -2.1751 3.3234 14 7 2.1510 -0.8334 4.8575 15 6 2.5745 -1.6634 5.8904 16 6 2.8550 -3.0061 5.6253 17 6 3.2764 -3.8319 6.6563 18 6 3.4063 -3.2960 7.9251 19 6 3.1077 -1.9372 8.1281 20 6 3.2362 -1.3753 9.4187 21 1 3.6612 -1.9590 10.2219 22 6 2.8124 -0.0620 9.6558 23 7 2.4127 0.6858 8.6606 24 14 2.8179 0.6216 11.3943 25 1 4.0825 1.3634 11.6304 26 1 1.6649 1.5412 11.5682 27 1 2.7108 -0.4961 12.3661 28 7 2.7111 -1.1713 7.1069 29 1 -0.3633 0.5194 0.8867 30 1 -0.3633 0.5082 -0.8933 31 1 -0.3633 -1.0276 0.0064 32 1 2.9269 -0.3134 -3.1653 33 1 1.6079 0.7831 -2.6898 34 1 3.2104 0.9369 -1.9305 35 1 4.1670 -0.8770 -0.6577 36 1 3.4814 -2.4157 -1.2787 37 1 3.6655 -2.0411 1.3934 38 1 2.1806 -2.7722 0.7136 39 1 1.6959 -0.0011 5.0597 40 1 2.7444 -3.3979 4.6249 41 1 3.4988 -4.8727 6.4725 42 1 3.7320 -3.9136 8.7491 43 1 2.1188 1.5955 8.8250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889984003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:40 Heat of formation + Delta-G solvation = -38.470539 kcal Electronic energy + Delta-G solvation = -26356.785859 eV Core-core repulsion = 22594.657588 eV Total energy + Delta-G solvation = -3762.128271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.26199 -40.84776 -39.50834 -38.88152 -36.26340 -35.17990 -33.99314 -32.40428 -32.37927 -31.27833 -29.44270 -27.69304 -26.43125 -25.12187 -23.88868 -23.58061 -22.52237 -21.34377 -20.70035 -19.41453 -19.03809 -18.24732 -17.76854 -17.36831 -16.98528 -16.56737 -16.35015 -15.87500 -15.62708 -15.18320 -15.01451 -14.74783 -14.59933 -14.44621 -14.22906 -13.96204 -13.84611 -13.48396 -13.20914 -13.12794 -12.96198 -12.74956 -12.69236 -12.63700 -12.54444 -12.22276 -11.87477 -11.79779 -11.69035 -11.55318 -11.47066 -11.08818 -10.44227 -10.05154 -9.92914 -9.70210 -9.10902 -8.34580 -6.54708 0.01041 0.89356 1.06341 1.13492 1.41457 1.52257 1.57481 2.02492 2.22457 2.33665 2.83476 3.11015 3.51899 3.57394 3.84802 3.85984 4.18749 4.26195 4.28384 4.36389 4.49728 4.55046 4.59611 4.64798 4.75642 4.81415 4.85940 4.89342 4.94211 4.98014 5.07426 5.13449 5.14369 5.19555 5.28497 5.33590 5.47319 5.51609 5.54578 5.83905 5.88241 6.06389 6.17363 6.26063 6.55422 6.71318 6.79277 6.94695 8.03096 8.41694 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023421 B = 0.002992 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.229192 B = 9356.072994 C =10214.087296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.075 0.925 4 C -0.090 4.090 5 H 0.103 0.897 6 C -0.138 4.138 7 C -0.122 4.122 8 C 0.087 3.913 9 N -0.580 5.580 10 C 0.527 3.473 11 O -0.541 6.541 12 C 0.508 3.492 13 O -0.504 6.504 14 N -0.620 5.620 15 C 0.339 3.661 16 C -0.317 4.317 17 C -0.045 4.045 18 C -0.298 4.298 19 C 0.243 3.757 20 C -0.463 4.463 21 H 0.096 0.904 22 C 0.023 3.977 23 N -0.756 5.756 24 Si 0.990 3.010 25 H -0.264 1.264 26 H -0.270 1.270 27 H -0.253 1.253 28 N -0.535 5.535 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.418 0.582 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -1.446 -19.916 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.093 0.907 4 C -0.109 4.109 5 H 0.121 0.879 6 C -0.196 4.196 7 C -0.160 4.160 8 C -0.035 4.035 9 N -0.314 5.314 10 C 0.309 3.691 11 O -0.420 6.420 12 C 0.290 3.710 13 O -0.379 6.379 14 N -0.265 5.265 15 C 0.105 3.895 16 C -0.342 4.342 17 C -0.069 4.069 18 C -0.321 4.321 19 C 0.117 3.883 20 C -0.494 4.494 21 H 0.114 0.886 22 C -0.198 4.198 23 N -0.378 5.378 24 Si 0.810 3.190 25 H -0.188 1.188 26 H -0.195 1.195 27 H -0.176 1.176 28 N -0.254 5.254 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.255 0.745 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.137 0.863 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.341 -0.521 -19.849 19.901 hybrid contribution -0.119 0.026 1.099 1.106 sum -1.460 -0.494 -18.750 18.813 Atomic orbital electron populations 1.22117 0.94010 1.02603 1.03011 1.22114 0.95247 0.96534 0.83663 0.90697 1.22330 0.97878 0.97784 0.92886 0.87865 1.21751 1.01834 0.98461 0.97540 1.22958 0.97739 1.02142 0.93140 1.22862 0.96106 0.87265 0.97231 1.48482 1.50441 1.28954 1.03501 1.19349 0.81592 0.84866 0.83320 1.90747 1.40191 1.27427 1.83590 1.20298 0.81219 0.85944 0.83567 1.90598 1.37704 1.26395 1.83241 1.42932 1.55360 1.24243 1.03971 1.18793 0.94836 0.87714 0.88165 1.21788 1.17754 0.92991 1.01685 1.21207 0.94635 0.99182 0.91862 1.21967 1.15423 0.96730 0.97954 1.18733 0.88738 0.88961 0.91912 1.19987 1.36321 0.98642 0.94484 0.88582 1.27032 0.92780 0.96794 1.03238 1.70209 1.25937 1.07366 1.34312 0.85082 0.78780 0.78672 0.76487 1.18843 1.19488 1.17590 1.68033 1.22500 1.37212 0.97693 0.93983 0.88784 0.92051 0.90298 0.91512 0.92905 0.90370 0.86900 0.89835 0.90146 0.74526 0.84233 0.84303 0.86317 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.11 71.98 0.66 -2.42 16 2 C 0.13 2.49 3.06 45.34 0.14 2.63 16 3 H 0.07 1.59 7.80 -2.39 -0.02 1.57 16 4 C -0.09 -1.09 3.07 -9.60 -0.03 -1.12 16 5 H 0.10 0.99 7.84 -2.38 -0.02 0.97 16 6 C -0.14 -1.22 9.16 71.98 0.66 -0.56 16 7 C -0.12 -1.60 6.54 31.99 0.21 -1.39 16 8 C 0.09 1.86 6.06 86.86 0.53 2.38 16 9 N -0.58 -15.26 3.06 -789.69 -2.42 -17.68 16 10 C 0.53 18.14 7.70 87.24 0.67 18.81 16 11 O -0.54 -20.78 15.53 -3.28 -0.05 -20.83 16 12 C 0.51 20.04 7.69 87.24 0.67 20.71 16 13 O -0.50 -20.08 10.58 -3.27 -0.03 -20.12 16 14 N -0.62 -27.95 5.39 -309.70 -1.67 -29.62 16 15 C 0.34 17.52 7.50 133.30 1.00 18.52 16 16 C -0.32 -15.23 8.83 22.72 0.20 -15.03 16 17 C -0.04 -2.03 10.15 22.39 0.23 -1.80 16 18 C -0.30 -14.83 9.83 22.87 0.22 -14.60 16 19 C 0.24 13.70 6.54 40.20 0.26 13.97 16 20 C -0.46 -25.13 9.13 23.47 0.21 -24.92 16 21 H 0.10 4.81 7.85 -2.91 -0.02 4.79 16 22 C 0.02 1.19 5.49 85.29 0.47 1.66 16 23 N -0.76 -41.15 11.49 21.84 0.25 -40.90 16 24 Si 0.99 38.25 29.56 68.60 2.03 40.28 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 26 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 27 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 28 N -0.53 -30.64 7.92 -186.42 -1.48 -32.12 16 29 H 0.04 1.08 6.89 -2.39 -0.02 1.06 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.55 8.11 -2.39 -0.02 0.53 16 35 H 0.08 1.06 8.05 -2.39 -0.02 1.04 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 2.17 6.17 -2.38 -0.01 2.16 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.42 18.76 8.31 -92.71 -0.77 17.99 16 40 H 0.14 6.34 5.34 -3.09 -0.02 6.32 16 41 H 0.14 5.13 8.06 -2.91 -0.02 5.11 16 42 H 0.12 5.32 8.06 -2.91 -0.02 5.29 16 43 H 0.28 13.77 8.29 -92.71 -0.77 13.00 16 Total: -1.00 -68.59 354.34 3.00 -65.59 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.27 Total: 38.55 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.10 Total: 16.85 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -5.32 Total: -120.32 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.09 Total: -40.95 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -68.59 3.00 -65.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889984003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.124 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds