Wall clock time and date at job start Tue Mar 31 2020 12:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.43374 * 2 1 4 4 C 1.54890 * 110.48221 * 237.31618 * 2 1 3 5 5 C 1.54897 * 102.74546 * 203.37660 * 4 2 1 6 6 C 1.54257 * 104.19593 * 37.94520 * 5 4 2 7 7 H 1.08997 * 110.07318 * 217.08273 * 6 5 4 8 8 N 1.46498 * 110.03514 * 95.67385 * 6 5 4 9 9 C 1.34771 * 120.00234 * 87.82753 * 8 6 5 10 10 O 1.21360 * 119.99852 * 0.02562 * 9 8 6 11 11 C 1.49367 * 120.00345 * 180.02562 * 9 8 6 12 12 O 1.21360 * 119.99802 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99991 * 180.02562 * 11 9 8 14 14 C 1.39116 * 119.99861 * 184.88193 * 13 11 9 15 15 C 1.39707 * 119.57784 * 174.65263 * 14 13 11 16 16 C 1.38655 * 119.49325 * 179.70855 * 15 14 13 17 17 C 1.38350 * 118.66966 * 0.55723 * 16 15 14 18 18 C 1.40598 * 119.13444 * 359.72658 * 17 16 15 19 19 C 1.41336 * 119.78159 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00336 * 359.97438 * 19 18 17 21 21 C 1.40033 * 119.99858 * 179.97438 * 19 18 17 22 22 N 1.30746 * 119.99901 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00296 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47220 * 89.99597 * 23 21 19 25 25 H 1.48498 * 109.47049 * 209.99671 * 23 21 19 26 26 H 1.48497 * 109.46912 * 329.99726 * 23 21 19 27 27 N 1.31936 * 119.58044 * 354.92831 * 14 13 11 28 28 C 1.53883 * 106.60144 * 336.38963 * 6 5 4 29 29 H 1.09002 * 109.47249 * 297.45490 * 1 2 3 30 30 H 1.08996 * 109.47657 * 57.45862 * 1 2 3 31 31 H 1.09002 * 109.47015 * 177.46046 * 1 2 3 32 32 H 1.09000 * 110.75991 * 321.69277 * 4 2 1 33 33 H 1.09007 * 110.75480 * 84.88011 * 4 2 1 34 34 H 1.09005 * 110.48392 * 279.26443 * 5 4 2 35 35 H 1.09000 * 110.48600 * 156.62451 * 5 4 2 36 36 H 0.97003 * 119.99934 * 267.84048 * 8 6 5 37 37 H 0.96996 * 120.00336 * 5.16555 * 13 11 9 38 38 H 1.08002 * 120.25523 * 0.02562 * 15 14 13 39 39 H 1.07993 * 120.66782 * 180.26624 * 16 15 14 40 40 H 1.07997 * 120.43010 * 179.75671 * 17 16 15 41 41 H 0.97000 * 120.00199 * 180.02562 * 22 21 19 42 42 H 1.08998 * 110.03536 * 119.28067 * 28 6 5 43 43 H 1.08997 * 110.02978 * 240.71631 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0720 -0.7835 -1.2212 5 6 3.4907 -1.1989 -0.7585 6 6 3.3166 -1.5396 0.7358 7 1 4.1927 -1.2161 1.2978 8 7 3.1186 -2.9816 0.9021 9 6 4.1833 -3.7970 1.0356 10 8 5.3061 -3.3367 1.0186 11 6 3.9815 -5.2673 1.2045 12 8 2.8588 -5.7277 1.2211 13 7 5.0463 -6.0827 1.3386 14 6 4.8645 -7.4608 1.3939 15 6 5.9789 -8.3029 1.4198 16 6 5.7957 -9.6759 1.4810 17 6 4.5047 -10.1730 1.5030 18 6 3.4244 -9.2739 1.4686 19 6 2.0999 -9.7667 1.4910 20 1 1.9203 -10.8308 1.5340 21 6 1.0205 -8.8753 1.4574 22 7 1.2379 -7.5870 1.4058 23 14 -0.7301 -9.5265 1.4863 24 1 -1.1915 -9.6436 2.8929 25 1 -1.6183 -8.5915 0.7501 26 1 -0.7719 -10.8622 0.8388 27 7 3.6418 -7.9560 1.4156 28 6 2.0699 -0.7773 1.2182 29 1 -0.3634 0.4738 0.9119 30 1 -0.3634 0.5528 -0.8663 31 1 -0.3633 -1.0267 -0.0455 32 1 1.4580 -1.6619 -1.4202 33 1 2.1220 -0.1416 -2.1008 34 1 4.1898 -0.3717 -0.8824 35 1 3.8316 -2.0738 -1.3121 36 1 2.2212 -3.3495 0.9159 37 1 5.9390 -5.7084 1.4007 38 1 6.9756 -7.8874 1.3975 39 1 6.6436 -10.3442 1.5063 40 1 4.3292 -11.2377 1.5465 41 1 0.4903 -6.9695 1.3829 42 1 1.3176 -1.4803 1.5759 43 1 2.3413 -0.0833 2.0137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890121704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:35 Heat of formation + Delta-G solvation = -24.650073 kcal Electronic energy + Delta-G solvation = -26427.077816 eV Core-core repulsion = 22665.548845 eV Total energy + Delta-G solvation = -3761.528971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36683 -39.07468 -38.02747 -37.10294 -34.57768 -33.76188 -32.99706 -30.65807 -30.37697 -29.22374 -28.63921 -25.85209 -25.25645 -24.08202 -21.85725 -21.25057 -20.33226 -20.21473 -19.39070 -18.26066 -17.15172 -16.73168 -16.22520 -15.63605 -15.26685 -15.13814 -14.70654 -14.48110 -14.12387 -13.87240 -13.63208 -13.50923 -13.24686 -13.17017 -12.88339 -12.54901 -12.08151 -12.01215 -11.78700 -11.57769 -11.22581 -11.20507 -11.08499 -11.00157 -10.90989 -10.76374 -10.71466 -10.69003 -10.52039 -9.98027 -9.79435 -9.09437 -9.08544 -8.96365 -8.03391 -7.32849 -7.05626 -6.22100 -4.45371 1.93869 2.81136 2.83779 3.08917 3.13212 3.15838 3.23481 3.97146 4.01388 4.10407 4.33594 4.35977 4.62253 4.86683 5.00715 5.09768 5.17928 5.24936 5.29614 5.33859 5.39258 5.59666 5.66447 5.76458 5.85606 5.92497 5.96933 5.97535 6.04851 6.06702 6.20628 6.42861 6.51199 6.58492 6.75673 6.79652 7.15505 7.31510 7.51075 7.53502 7.76319 7.91493 8.05943 8.19573 8.37230 8.63402 8.93986 9.02002 10.14687 10.41201 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.003975 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.186337 B = 7043.156691 C = 8960.535758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.122 4.122 5 C -0.134 4.134 6 C 0.139 3.861 7 H 0.092 0.908 8 N -0.698 5.698 9 C 0.509 3.491 10 O -0.535 6.535 11 C 0.465 3.535 12 O -0.387 6.387 13 N -0.639 5.639 14 C 0.368 3.632 15 C -0.349 4.349 16 C -0.036 4.036 17 C -0.301 4.301 18 C 0.271 3.729 19 C -0.424 4.424 20 H 0.083 0.917 21 C 0.060 3.940 22 N -0.662 5.662 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.475 5.475 28 C -0.128 4.128 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.411 0.589 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.077 0.923 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 14.733 -2.278 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.094 0.906 4 C -0.159 4.159 5 C -0.173 4.173 6 C 0.035 3.965 7 H 0.110 0.890 8 N -0.352 5.352 9 C 0.290 3.710 10 O -0.412 6.412 11 C 0.242 3.758 12 O -0.250 6.250 13 N -0.288 5.288 14 C 0.130 3.870 15 C -0.375 4.375 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.146 3.854 19 C -0.455 4.455 20 H 0.101 0.899 21 C -0.169 4.169 22 N -0.281 5.281 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.194 5.194 28 C -0.166 4.166 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.249 0.751 37 H 0.247 0.753 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.779 15.545 -2.326 15.819 hybrid contribution 0.142 -0.766 0.072 0.783 sum -1.636 14.779 -2.254 15.039 Atomic orbital electron populations 1.21822 0.94787 1.02169 1.01554 1.21974 0.95686 0.99190 0.94628 0.90618 1.22615 0.96108 0.99913 0.97300 1.22779 0.97252 1.01816 0.95422 1.21646 0.98972 0.79411 0.96503 0.89023 1.45951 1.10039 1.06902 1.72333 1.20826 0.84936 0.88621 0.76597 1.90688 1.23528 1.77572 1.49393 1.20166 0.86997 0.86340 0.82322 1.91208 1.20815 1.74241 1.38730 1.43002 1.09929 1.04647 1.71182 1.18552 0.91795 0.82126 0.94490 1.20520 0.96008 0.93840 1.27103 1.20586 0.95993 0.93763 0.95687 1.21653 0.93237 0.98923 1.18592 1.18366 0.92942 0.86100 0.87974 1.19590 0.89216 0.94307 1.42362 0.89850 1.26164 1.00766 0.95007 0.94971 1.70310 1.31936 1.01353 1.24521 0.86488 0.82429 0.79876 0.79000 1.19629 1.20303 1.18722 1.68645 1.16518 1.13949 1.20281 1.22565 0.96705 0.99202 0.98173 0.92688 0.92691 0.92310 0.91136 0.91521 0.90740 0.90971 0.75058 0.75338 0.88731 0.88369 0.88384 0.91695 0.90449 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.12 37.16 0.34 -0.75 16 2 C -0.10 -0.76 3.46 -88.96 -0.31 -1.07 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -1.08 6.33 -24.73 -0.16 -1.24 16 5 C -0.13 -1.40 6.54 -25.07 -0.16 -1.56 16 6 C 0.14 1.56 3.25 -66.81 -0.22 1.35 16 7 H 0.09 1.11 7.56 -51.93 -0.39 0.72 16 8 N -0.70 -9.68 5.02 -53.18 -0.27 -9.95 16 9 C 0.51 8.73 7.88 -11.63 -0.09 8.64 16 10 O -0.53 -9.73 16.14 5.49 0.09 -9.65 16 11 C 0.47 9.63 7.84 -11.62 -0.09 9.54 16 12 O -0.39 -9.19 12.24 5.49 0.07 -9.12 16 13 N -0.64 -13.38 5.37 -11.83 -0.06 -13.44 16 14 C 0.37 9.05 7.42 -155.09 -1.15 7.90 16 15 C -0.35 -7.90 9.96 -38.88 -0.39 -8.29 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.30 -7.47 9.83 -38.65 -0.38 -7.85 16 18 C 0.27 7.50 6.55 -85.00 -0.56 6.94 16 19 C -0.42 -11.41 9.14 -37.73 -0.34 -11.75 16 20 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 21 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 22 N -0.66 -17.56 8.99 55.55 0.50 -17.06 16 23 Si 0.90 18.67 29.56 -169.99 -5.02 13.65 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 N -0.47 -13.12 5.73 -10.28 -0.06 -13.18 16 28 C -0.13 -1.14 6.14 -25.61 -0.16 -1.30 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.05 16 32 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 36 H 0.41 5.61 7.79 -40.82 -0.32 5.29 16 37 H 0.41 7.40 8.18 -40.82 -0.33 7.06 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 41 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 42 H 0.08 0.71 7.31 -51.93 -0.38 0.33 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -31.01 357.68 -9.56 -40.57 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.03 Total: 12.02 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -4.16 Total: 0.76 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.11 Total: -53.63 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.16 Total: -18.77 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.01 -9.56 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890121704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.923 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds