Wall clock time and date at job start Tue Mar 31 2020 12:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.43374 * 2 1 4 4 C 1.54890 * 110.48221 * 237.31618 * 2 1 3 5 5 C 1.54897 * 102.74546 * 203.37660 * 4 2 1 6 6 C 1.54257 * 104.19593 * 37.94520 * 5 4 2 7 7 H 1.08997 * 110.07318 * 217.08273 * 6 5 4 8 8 N 1.46498 * 110.03514 * 95.67385 * 6 5 4 9 9 C 1.34771 * 120.00234 * 87.82753 * 8 6 5 10 10 O 1.21360 * 119.99852 * 0.02562 * 9 8 6 11 11 C 1.49367 * 120.00345 * 180.02562 * 9 8 6 12 12 O 1.21360 * 119.99802 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99991 * 180.02562 * 11 9 8 14 14 C 1.39116 * 119.99861 * 184.88193 * 13 11 9 15 15 C 1.39707 * 119.57784 * 174.65263 * 14 13 11 16 16 C 1.38655 * 119.49325 * 179.70855 * 15 14 13 17 17 C 1.38350 * 118.66966 * 0.55723 * 16 15 14 18 18 C 1.40598 * 119.13444 * 359.72658 * 17 16 15 19 19 C 1.41336 * 119.78159 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00336 * 359.97438 * 19 18 17 21 21 C 1.40033 * 119.99858 * 179.97438 * 19 18 17 22 22 N 1.30746 * 119.99901 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00296 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47220 * 89.99597 * 23 21 19 25 25 H 1.48498 * 109.47049 * 209.99671 * 23 21 19 26 26 H 1.48497 * 109.46912 * 329.99726 * 23 21 19 27 27 N 1.31936 * 119.58044 * 354.92831 * 14 13 11 28 28 C 1.53883 * 106.60144 * 336.38963 * 6 5 4 29 29 H 1.09002 * 109.47249 * 297.45490 * 1 2 3 30 30 H 1.08996 * 109.47657 * 57.45862 * 1 2 3 31 31 H 1.09002 * 109.47015 * 177.46046 * 1 2 3 32 32 H 1.09000 * 110.75991 * 321.69277 * 4 2 1 33 33 H 1.09007 * 110.75480 * 84.88011 * 4 2 1 34 34 H 1.09005 * 110.48392 * 279.26443 * 5 4 2 35 35 H 1.09000 * 110.48600 * 156.62451 * 5 4 2 36 36 H 0.97003 * 119.99934 * 267.84048 * 8 6 5 37 37 H 0.96996 * 120.00336 * 5.16555 * 13 11 9 38 38 H 1.08002 * 120.25523 * 0.02562 * 15 14 13 39 39 H 1.07993 * 120.66782 * 180.26624 * 16 15 14 40 40 H 1.07997 * 120.43010 * 179.75671 * 17 16 15 41 41 H 0.97000 * 120.00199 * 180.02562 * 22 21 19 42 42 H 1.08998 * 110.03536 * 119.28067 * 28 6 5 43 43 H 1.08997 * 110.02978 * 240.71631 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0720 -0.7835 -1.2212 5 6 3.4907 -1.1989 -0.7585 6 6 3.3166 -1.5396 0.7358 7 1 4.1927 -1.2161 1.2978 8 7 3.1186 -2.9816 0.9021 9 6 4.1833 -3.7970 1.0356 10 8 5.3061 -3.3367 1.0186 11 6 3.9815 -5.2673 1.2045 12 8 2.8588 -5.7277 1.2211 13 7 5.0463 -6.0827 1.3386 14 6 4.8645 -7.4608 1.3939 15 6 5.9789 -8.3029 1.4198 16 6 5.7957 -9.6759 1.4810 17 6 4.5047 -10.1730 1.5030 18 6 3.4244 -9.2739 1.4686 19 6 2.0999 -9.7667 1.4910 20 1 1.9203 -10.8308 1.5340 21 6 1.0205 -8.8753 1.4574 22 7 1.2379 -7.5870 1.4058 23 14 -0.7301 -9.5265 1.4863 24 1 -1.1915 -9.6436 2.8929 25 1 -1.6183 -8.5915 0.7501 26 1 -0.7719 -10.8622 0.8388 27 7 3.6418 -7.9560 1.4156 28 6 2.0699 -0.7773 1.2182 29 1 -0.3634 0.4738 0.9119 30 1 -0.3634 0.5528 -0.8663 31 1 -0.3633 -1.0267 -0.0455 32 1 1.4580 -1.6619 -1.4202 33 1 2.1220 -0.1416 -2.1008 34 1 4.1898 -0.3717 -0.8824 35 1 3.8316 -2.0738 -1.3121 36 1 2.2212 -3.3495 0.9159 37 1 5.9390 -5.7084 1.4007 38 1 6.9756 -7.8874 1.3975 39 1 6.6436 -10.3442 1.5063 40 1 4.3292 -11.2377 1.5465 41 1 0.4903 -6.9695 1.3829 42 1 1.3176 -1.4803 1.5759 43 1 2.3413 -0.0833 2.0137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890121704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:34 Heat of formation + Delta-G solvation = -43.426956 kcal Electronic energy + Delta-G solvation = -26427.892043 eV Core-core repulsion = 22665.548845 eV Total energy + Delta-G solvation = -3762.343198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79378 -40.52845 -39.37244 -38.64791 -36.22026 -35.19887 -34.65141 -32.27473 -31.48810 -31.05935 -29.50912 -27.65880 -26.41728 -25.29110 -23.56895 -22.96310 -21.45986 -21.21699 -20.62494 -19.89660 -18.83346 -18.17308 -17.60730 -16.88881 -16.55106 -16.48376 -16.35268 -16.29066 -15.60382 -15.19105 -15.07584 -14.74677 -14.64089 -14.37838 -13.91550 -13.82508 -13.76501 -13.26770 -12.89258 -12.78622 -12.74576 -12.60631 -12.57219 -12.33727 -12.26076 -11.94701 -11.76879 -11.72726 -11.60150 -11.48013 -11.39993 -10.92044 -10.59291 -10.23974 -9.94032 -9.20003 -8.92451 -8.08885 -6.43084 0.38013 1.02932 1.27097 1.42071 1.42490 1.53405 1.56201 2.27477 2.38266 2.69447 2.97947 3.48144 3.57398 3.60891 3.90776 4.01187 4.30745 4.32606 4.43516 4.47727 4.53299 4.61129 4.66999 4.70837 4.81431 4.85852 4.93880 4.95922 4.98832 5.01595 5.11445 5.15012 5.26159 5.27867 5.34194 5.44267 5.55976 5.63252 5.71295 5.89426 6.00616 6.16772 6.29695 6.54889 6.72351 6.86598 7.03561 7.29484 8.24830 8.55267 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.003975 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.186337 B = 7043.156691 C = 8960.535758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.092 0.908 4 C -0.119 4.119 5 C -0.133 4.133 6 C 0.134 3.866 7 H 0.087 0.913 8 N -0.683 5.683 9 C 0.518 3.482 10 O -0.546 6.546 11 C 0.458 3.542 12 O -0.420 6.420 13 N -0.633 5.633 14 C 0.347 3.653 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.322 4.322 18 C 0.237 3.763 19 C -0.462 4.462 20 H 0.087 0.913 21 C 0.014 3.986 22 N -0.694 5.694 23 Si 0.976 3.024 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.258 1.258 27 N -0.506 5.506 28 C -0.124 4.124 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.414 0.586 37 H 0.424 0.576 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.274 0.726 42 H 0.073 0.927 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 16.048 -2.388 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.110 0.890 4 C -0.157 4.157 5 C -0.171 4.171 6 C 0.030 3.970 7 H 0.105 0.895 8 N -0.336 5.336 9 C 0.299 3.701 10 O -0.424 6.424 11 C 0.236 3.764 12 O -0.285 6.285 13 N -0.283 5.283 14 C 0.109 3.891 15 C -0.369 4.369 16 C -0.057 4.057 17 C -0.345 4.345 18 C 0.111 3.889 19 C -0.492 4.492 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.313 5.313 23 Si 0.797 3.203 24 H -0.191 1.191 25 H -0.196 1.196 26 H -0.182 1.182 27 N -0.226 5.226 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.251 0.749 37 H 0.262 0.738 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.739 16.899 -2.439 17.163 hybrid contribution 0.287 -1.129 0.097 1.168 sum -1.452 15.771 -2.342 16.010 Atomic orbital electron populations 1.21814 0.94366 1.01750 1.02345 1.21961 0.95958 0.99584 0.93262 0.88985 1.22602 0.94785 0.99873 0.98414 1.22764 0.98648 1.01388 0.94314 1.21934 1.00150 0.77535 0.97339 0.89520 1.46016 1.09203 1.07895 1.70447 1.20119 0.85545 0.87108 0.77340 1.90683 1.23887 1.77210 1.50639 1.20818 0.86463 0.87905 0.81171 1.91203 1.21979 1.75315 1.40005 1.43000 1.10867 1.03630 1.70830 1.19010 0.91851 0.83768 0.94475 1.20964 0.97035 0.93935 1.24922 1.21046 0.96390 0.94455 0.93827 1.21854 0.93845 0.99272 1.19542 1.18863 0.94279 0.86919 0.88807 1.19924 0.90094 0.94902 1.44306 0.89452 1.26993 1.04828 0.95115 0.94190 1.70462 1.33217 1.02468 1.25174 0.85305 0.76660 0.79248 0.79073 1.19130 1.19566 1.18200 1.68600 1.18318 1.14292 1.21394 1.22573 0.95325 0.99165 0.99130 0.91943 0.91885 0.93367 0.92380 0.90116 0.89220 0.93282 0.74876 0.73802 0.85297 0.84284 0.87340 0.91546 0.90853 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.12 71.98 0.66 -1.23 16 2 C -0.09 -1.21 3.46 -9.72 -0.03 -1.24 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.12 -1.93 6.33 31.89 0.20 -1.73 16 5 C -0.13 -2.62 6.54 31.67 0.21 -2.41 16 6 C 0.13 2.86 3.25 45.72 0.15 3.01 16 7 H 0.09 1.99 7.56 -2.39 -0.02 1.97 16 8 N -0.68 -18.91 5.02 -440.53 -2.21 -21.12 16 9 C 0.52 17.90 7.88 87.24 0.69 18.58 16 10 O -0.55 -19.64 16.14 -3.28 -0.05 -19.69 16 11 C 0.46 19.41 7.84 87.24 0.68 20.09 16 12 O -0.42 -20.70 12.24 -3.28 -0.04 -20.74 16 13 N -0.63 -26.72 5.37 -309.70 -1.66 -28.38 16 14 C 0.35 17.18 7.42 133.30 0.99 18.17 16 15 C -0.34 -15.06 9.96 22.72 0.23 -14.83 16 16 C -0.03 -1.44 10.15 22.40 0.23 -1.22 16 17 C -0.32 -16.09 9.83 22.87 0.22 -15.87 16 18 C 0.24 13.47 6.55 40.20 0.26 13.73 16 19 C -0.46 -25.64 9.14 23.47 0.21 -25.43 16 20 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 21 C 0.01 0.75 5.50 85.29 0.47 1.21 16 22 N -0.69 -38.05 8.99 21.84 0.20 -37.85 16 23 Si 0.98 39.13 29.56 68.60 2.03 41.16 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 26 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 27 N -0.51 -28.80 5.73 -186.43 -1.07 -29.87 16 28 C -0.12 -1.98 6.14 31.32 0.19 -1.79 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.05 1.20 8.04 -2.39 -0.02 1.19 16 36 H 0.41 11.43 7.79 -92.71 -0.72 10.70 16 37 H 0.42 15.06 8.18 -92.71 -0.76 14.31 16 38 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 41 H 0.27 13.85 8.29 -92.71 -0.77 13.08 16 42 H 0.07 1.26 7.31 -2.39 -0.02 1.24 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -68.84 357.68 2.12 -66.73 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.43 Total: 40.72 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.36 Total: 9.06 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.75 Total: -117.22 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.09 Total: -40.44 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -68.84 2.12 -66.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890121704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.302 kcal (2) G-P(sol) polarization free energy of solvation -68.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds