Wall clock time and date at job start Tue Mar 31 2020 11:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99851 * 2 1 4 4 N 1.46499 * 109.47305 * 124.99952 * 3 2 1 5 5 C 1.34774 * 119.99719 * 82.46338 * 4 3 2 6 6 O 1.21361 * 119.99658 * 182.61471 * 5 4 3 7 7 C 1.49364 * 120.00361 * 2.62456 * 5 4 3 8 8 O 1.21363 * 120.00105 * 357.49986 * 7 5 4 9 9 N 1.34778 * 120.00264 * 177.50404 * 7 5 4 10 10 C 1.39110 * 120.00016 * 186.16666 * 9 7 5 11 11 C 1.39712 * 119.57868 * 16.13751 * 10 9 7 12 12 C 1.38655 * 119.49056 * 180.02562 * 11 10 9 13 13 C 1.38341 * 118.67155 * 359.72455 * 12 11 10 14 14 C 1.40589 * 119.14008 * 0.53568 * 13 12 11 15 15 C 1.41332 * 119.79065 * 179.72793 * 14 13 12 16 16 H 1.08002 * 120.00107 * 7.10361 * 15 14 13 17 17 C 1.40032 * 120.00384 * 187.10900 * 15 14 13 18 18 N 1.30738 * 119.99999 * 194.39863 * 17 15 14 19 19 Si 1.86795 * 119.99828 * 14.39099 * 17 15 14 20 20 H 1.48492 * 109.47525 * 270.00578 * 19 17 15 21 21 H 1.48505 * 109.47174 * 30.00550 * 19 17 15 22 22 H 1.48500 * 109.46960 * 150.00394 * 19 17 15 23 23 N 1.31933 * 119.57907 * 196.15913 * 10 9 7 24 24 C 1.46499 * 119.99955 * 262.47180 * 4 3 2 25 25 C 1.52995 * 109.47329 * 115.91919 * 24 4 3 26 26 C 1.53007 * 109.46763 * 235.91586 * 24 4 3 27 27 H 1.08002 * 120.00648 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00210 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99989 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47348 * 5.00093 * 3 2 1 31 31 H 1.09006 * 109.47282 * 245.00415 * 3 2 1 32 32 H 0.96996 * 119.99598 * 6.16818 * 9 7 5 33 33 H 1.07996 * 120.25331 * 359.97438 * 11 10 9 34 34 H 1.08003 * 120.66355 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.42948 * 180.26198 * 13 12 11 36 36 H 0.96998 * 120.00103 * 354.93115 * 18 17 15 37 37 H 1.08999 * 109.47414 * 355.91120 * 24 4 3 38 38 H 1.08996 * 109.47222 * 67.95993 * 25 24 4 39 39 H 1.09002 * 109.47253 * 187.96483 * 25 24 4 40 40 H 1.09001 * 109.47092 * 307.95915 * 25 24 4 41 41 H 1.09003 * 109.46947 * 63.73580 * 26 24 4 42 42 H 1.08996 * 109.46890 * 183.73854 * 26 24 4 43 43 H 1.09003 * 109.46986 * 303.73491 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.1957 0.7308 1.0299 6 8 4.9471 0.7120 1.9828 7 6 4.6031 0.0879 -0.2553 8 8 3.8340 0.0670 -1.1939 9 7 5.8247 -0.4692 -0.3726 10 6 6.2531 -0.9531 -1.6044 11 6 5.5823 -0.5679 -2.7679 12 6 6.0105 -1.0518 -3.9947 13 6 7.1006 -1.9029 -4.0286 14 6 7.7299 -2.2578 -2.8226 15 6 8.8410 -3.1310 -2.8408 16 1 9.2757 -3.4323 -3.7825 17 6 9.3784 -3.6057 -1.6380 18 7 10.5558 -4.1739 -1.6272 19 14 8.4130 -3.4269 -0.0489 20 1 8.7561 -2.1341 0.5961 21 1 6.9585 -3.4608 -0.3468 22 1 8.7567 -4.5438 0.8674 23 7 7.2874 -1.7704 -1.6591 24 6 2.6174 2.0122 2.3731 25 6 2.5283 0.9898 3.5079 26 6 3.6723 3.0656 2.7175 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 6.4051 -0.5327 0.4019 33 1 4.7363 0.1010 -2.7120 34 1 5.5062 -0.7660 -4.9059 35 1 7.4607 -2.2932 -4.9691 36 1 11.0252 -4.3331 -2.4610 37 1 1.6494 2.4962 2.2433 38 1 3.5244 0.6086 3.7326 39 1 2.1132 1.4674 4.3955 40 1 1.8836 0.1650 3.2041 41 1 3.6892 3.8302 1.9408 42 1 3.4275 3.5255 3.6748 43 1 4.6517 2.5914 2.7820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890134777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:28 Heat of formation + Delta-G solvation = -0.103981 kcal Electronic energy + Delta-G solvation = -26888.529343 eV Core-core repulsion = 23128.064770 eV Total energy + Delta-G solvation = -3760.464572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.19526 -39.49282 -38.03648 -36.92905 -34.72126 -34.29333 -33.53954 -31.80005 -31.15054 -29.70728 -27.35605 -26.53228 -25.67062 -24.86263 -22.73874 -21.85782 -20.70095 -20.19627 -19.47696 -18.39917 -17.82933 -16.98539 -16.30392 -16.11889 -15.88329 -15.26401 -14.93898 -14.82328 -14.35788 -14.22201 -13.95717 -13.76466 -13.50445 -13.29918 -13.11847 -12.65957 -12.45411 -12.28567 -12.23791 -12.13448 -11.93953 -11.80238 -11.53418 -11.32085 -11.17945 -10.91767 -10.51343 -10.39634 -10.05766 -9.75192 -9.53274 -9.13984 -9.09573 -8.85079 -8.58945 -7.88839 -7.51553 -7.30693 -4.81283 1.28237 1.95765 2.37397 2.53054 2.61491 3.28975 3.46212 3.51986 3.61980 3.91328 4.30542 4.33067 4.56126 4.66156 4.73299 4.82981 4.95125 5.01142 5.24300 5.43993 5.45600 5.48085 5.57905 5.63843 5.70524 5.76860 5.79327 5.95978 6.01863 6.11557 6.31158 6.34461 6.40931 6.46680 6.50307 6.64530 6.89578 7.02204 7.08278 7.35812 7.41908 7.51674 7.68089 7.72587 8.03840 8.11578 8.30290 8.59396 9.35923 9.94698 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.004014 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.721977 B = 6973.864716 C = 7884.996753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C 0.119 3.881 4 N -0.578 5.578 5 C 0.513 3.487 6 O -0.511 6.511 7 C 0.505 3.495 8 O -0.488 6.488 9 N -0.621 5.621 10 C 0.378 3.622 11 C -0.313 4.313 12 C -0.036 4.036 13 C -0.273 4.273 14 C 0.273 3.727 15 C -0.477 4.477 16 H 0.085 0.915 17 C 0.049 3.951 18 N -0.801 5.801 19 Si 1.140 2.860 20 H -0.286 1.286 21 H -0.277 1.277 22 H -0.326 1.326 23 N -0.591 5.591 24 C 0.144 3.856 25 C -0.169 4.169 26 C -0.175 4.175 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.418 0.582 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.285 0.715 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 11.574 6.596 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.167 4.167 3 C -0.002 4.002 4 N -0.312 5.312 5 C 0.296 3.704 6 O -0.386 6.386 7 C 0.287 3.713 8 O -0.362 6.362 9 N -0.267 5.267 10 C 0.147 3.853 11 C -0.337 4.337 12 C -0.060 4.060 13 C -0.295 4.295 14 C 0.149 3.851 15 C -0.509 4.509 16 H 0.103 0.897 17 C -0.174 4.174 18 N -0.422 5.422 19 Si 0.973 3.027 20 H -0.213 1.213 21 H -0.205 1.205 22 H -0.259 1.259 23 N -0.316 5.316 24 C 0.042 3.958 25 C -0.227 4.227 26 C -0.233 4.233 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.143 0.857 32 H 0.256 0.744 33 H 0.160 0.840 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.329 11.071 8.728 21.572 hybrid contribution -0.101 0.308 -2.337 2.360 sum -16.430 11.378 6.390 20.982 Atomic orbital electron populations 1.23778 0.95647 1.01735 1.01804 1.23239 0.95906 0.98992 0.98594 1.21365 0.92466 0.95466 0.90913 1.47954 1.14942 1.52861 1.15453 1.20018 0.82332 0.79819 0.88249 1.90714 1.51816 1.57485 1.38581 1.20022 0.82186 0.80351 0.88763 1.90582 1.50370 1.55832 1.39466 1.42950 1.16249 1.55419 1.12059 1.18036 0.92252 0.91755 0.83250 1.21609 1.08432 1.12762 0.90931 1.20912 0.94468 0.94337 0.96323 1.21643 1.01453 1.08049 0.98368 1.18183 0.90863 0.90423 0.85590 1.20708 1.10633 1.23148 0.96399 0.89711 1.27679 0.94293 0.89814 1.05569 1.70617 1.09466 1.29635 1.32529 0.82169 0.75449 0.74482 0.70559 1.21342 1.20459 1.25873 1.66199 1.18240 1.17696 1.29460 1.21194 0.98533 0.92933 0.83184 1.22208 1.03831 0.99152 0.97478 1.22267 1.01383 0.98102 1.01500 0.88697 0.88458 0.87240 0.90314 0.85727 0.74441 0.84010 0.87505 0.87596 0.90399 0.89240 0.90535 0.91669 0.92402 0.92610 0.91473 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 14.32 29.01 0.42 -1.30 16 2 C -0.15 -1.62 8.88 -36.03 -0.32 -1.94 16 3 C 0.12 1.23 5.47 -5.19 -0.03 1.20 16 4 N -0.58 -6.61 2.43 -168.00 -0.41 -7.02 16 5 C 0.51 7.44 7.08 -11.63 -0.08 7.36 16 6 O -0.51 -8.09 12.77 5.49 0.07 -8.02 16 7 C 0.51 8.46 7.61 -11.62 -0.09 8.37 16 8 O -0.49 -8.27 8.81 5.49 0.05 -8.22 16 9 N -0.62 -12.02 5.40 -11.83 -0.06 -12.08 16 10 C 0.38 8.58 7.53 -155.09 -1.17 7.41 16 11 C -0.31 -6.72 8.87 -38.88 -0.34 -7.06 16 12 C -0.04 -0.77 10.15 -39.39 -0.40 -1.16 16 13 C -0.27 -6.36 9.83 -38.66 -0.38 -6.74 16 14 C 0.27 7.10 6.31 -85.00 -0.54 6.56 16 15 C -0.48 -12.87 9.52 -37.73 -0.36 -13.23 16 16 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 17 C 0.05 1.32 5.52 -17.34 -0.10 1.22 16 18 N -0.80 -21.68 13.65 55.55 0.76 -20.92 16 19 Si 1.14 27.96 25.98 -169.99 -4.42 23.55 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.89 6.38 56.52 0.36 -6.53 16 22 H -0.33 -7.87 7.11 56.52 0.40 -7.47 16 23 N -0.59 -14.95 4.84 -10.28 -0.05 -15.00 16 24 C 0.14 1.34 3.28 -67.93 -0.22 1.11 16 25 C -0.17 -1.61 9.07 37.16 0.34 -1.27 16 26 C -0.17 -1.63 9.11 37.16 0.34 -1.30 16 27 H 0.09 0.68 7.84 -52.49 -0.41 0.27 16 28 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.11 1.44 7.72 -52.49 -0.40 1.03 16 30 H 0.08 0.60 7.39 -51.93 -0.38 0.22 16 31 H 0.13 1.49 5.44 -51.93 -0.28 1.21 16 32 H 0.42 7.82 8.30 -40.82 -0.34 7.48 16 33 H 0.14 2.85 5.16 -52.92 -0.27 2.58 16 34 H 0.11 1.90 8.06 -52.48 -0.42 1.47 16 35 H 0.11 2.30 8.06 -52.48 -0.42 1.88 16 36 H 0.28 7.35 8.73 -40.82 -0.36 6.99 16 37 H 0.09 0.63 7.68 -51.93 -0.40 0.23 16 38 H 0.08 0.90 6.60 -51.93 -0.34 0.56 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.01 5.86 -51.93 -0.30 0.71 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -29.00 352.54 -7.40 -36.40 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.72 Total: 6.77 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.94 Total: -0.76 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.24 Total: -55.02 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.12 Total: -16.24 kcal Atomic # 14 Polarization: 27.96 SS G_CDS: -4.42 Total: 23.55 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.00 -7.40 -36.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890134777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.298 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds