Wall clock time and date at job start Tue Mar 31 2020 11:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99851 * 2 1 4 4 N 1.46499 * 109.47305 * 124.99952 * 3 2 1 5 5 C 1.34774 * 119.99719 * 82.46338 * 4 3 2 6 6 O 1.21361 * 119.99658 * 182.61471 * 5 4 3 7 7 C 1.49364 * 120.00361 * 2.62456 * 5 4 3 8 8 O 1.21363 * 120.00105 * 357.49986 * 7 5 4 9 9 N 1.34778 * 120.00264 * 177.50404 * 7 5 4 10 10 C 1.39110 * 120.00016 * 186.16666 * 9 7 5 11 11 C 1.39712 * 119.57868 * 16.13751 * 10 9 7 12 12 C 1.38655 * 119.49056 * 180.02562 * 11 10 9 13 13 C 1.38341 * 118.67155 * 359.72455 * 12 11 10 14 14 C 1.40589 * 119.14008 * 0.53568 * 13 12 11 15 15 C 1.41332 * 119.79065 * 179.72793 * 14 13 12 16 16 H 1.08002 * 120.00107 * 7.10361 * 15 14 13 17 17 C 1.40032 * 120.00384 * 187.10900 * 15 14 13 18 18 N 1.30738 * 119.99999 * 194.39863 * 17 15 14 19 19 Si 1.86795 * 119.99828 * 14.39099 * 17 15 14 20 20 H 1.48492 * 109.47525 * 270.00578 * 19 17 15 21 21 H 1.48505 * 109.47174 * 30.00550 * 19 17 15 22 22 H 1.48500 * 109.46960 * 150.00394 * 19 17 15 23 23 N 1.31933 * 119.57907 * 196.15913 * 10 9 7 24 24 C 1.46499 * 119.99955 * 262.47180 * 4 3 2 25 25 C 1.52995 * 109.47329 * 115.91919 * 24 4 3 26 26 C 1.53007 * 109.46763 * 235.91586 * 24 4 3 27 27 H 1.08002 * 120.00648 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00210 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99989 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47348 * 5.00093 * 3 2 1 31 31 H 1.09006 * 109.47282 * 245.00415 * 3 2 1 32 32 H 0.96996 * 119.99598 * 6.16818 * 9 7 5 33 33 H 1.07996 * 120.25331 * 359.97438 * 11 10 9 34 34 H 1.08003 * 120.66355 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.42948 * 180.26198 * 13 12 11 36 36 H 0.96998 * 120.00103 * 354.93115 * 18 17 15 37 37 H 1.08999 * 109.47414 * 355.91120 * 24 4 3 38 38 H 1.08996 * 109.47222 * 67.95993 * 25 24 4 39 39 H 1.09002 * 109.47253 * 187.96483 * 25 24 4 40 40 H 1.09001 * 109.47092 * 307.95915 * 25 24 4 41 41 H 1.09003 * 109.46947 * 63.73580 * 26 24 4 42 42 H 1.08996 * 109.46890 * 183.73854 * 26 24 4 43 43 H 1.09003 * 109.46986 * 303.73491 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.1957 0.7308 1.0299 6 8 4.9471 0.7120 1.9828 7 6 4.6031 0.0879 -0.2553 8 8 3.8340 0.0670 -1.1939 9 7 5.8247 -0.4692 -0.3726 10 6 6.2531 -0.9531 -1.6044 11 6 5.5823 -0.5679 -2.7679 12 6 6.0105 -1.0518 -3.9947 13 6 7.1006 -1.9029 -4.0286 14 6 7.7299 -2.2578 -2.8226 15 6 8.8410 -3.1310 -2.8408 16 1 9.2757 -3.4323 -3.7825 17 6 9.3784 -3.6057 -1.6380 18 7 10.5558 -4.1739 -1.6272 19 14 8.4130 -3.4269 -0.0489 20 1 8.7561 -2.1341 0.5961 21 1 6.9585 -3.4608 -0.3468 22 1 8.7567 -4.5438 0.8674 23 7 7.2874 -1.7704 -1.6591 24 6 2.6174 2.0122 2.3731 25 6 2.5283 0.9898 3.5079 26 6 3.6723 3.0656 2.7175 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 6.4051 -0.5327 0.4019 33 1 4.7363 0.1010 -2.7120 34 1 5.5062 -0.7660 -4.9059 35 1 7.4607 -2.2932 -4.9691 36 1 11.0252 -4.3331 -2.4610 37 1 1.6494 2.4962 2.2433 38 1 3.5244 0.6086 3.7326 39 1 2.1132 1.4674 4.3955 40 1 1.8836 0.1650 3.2041 41 1 3.6892 3.8302 1.9408 42 1 3.4275 3.5255 3.6748 43 1 4.6517 2.5914 2.7820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890134777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:27 Heat of formation + Delta-G solvation = -16.638899 kcal Electronic energy + Delta-G solvation = -26889.246351 eV Core-core repulsion = 23128.064770 eV Total energy + Delta-G solvation = -3761.181580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.45784 -40.93172 -39.59875 -37.96959 -36.30580 -35.38835 -35.09658 -33.01635 -32.64674 -31.49014 -28.08466 -27.75009 -27.20185 -26.14033 -24.01079 -23.64194 -22.14260 -21.02656 -20.87189 -20.17355 -19.05440 -18.45964 -17.54069 -17.32248 -17.02582 -16.87717 -16.33707 -16.09447 -15.79122 -15.52515 -15.34222 -14.91373 -14.76191 -14.52347 -14.37073 -14.27382 -14.02625 -13.76429 -13.36817 -13.16571 -12.98367 -12.87248 -12.79507 -12.46482 -12.29367 -12.20754 -12.03589 -11.89728 -11.66985 -11.54945 -11.11090 -10.47534 -10.43302 -10.15461 -9.89940 -9.79965 -9.33976 -9.28282 -6.82294 -0.05539 0.70124 0.84707 0.99186 1.40635 1.51479 1.62541 1.93538 2.00576 2.34093 2.36312 2.60884 3.05172 3.54800 3.88362 3.99909 4.03273 4.08145 4.21412 4.30249 4.32482 4.48691 4.59626 4.61615 4.68463 4.75061 4.77685 4.86054 4.93261 4.96240 5.07277 5.18468 5.29129 5.34687 5.36481 5.38940 5.51760 5.66683 5.69941 5.72893 5.85825 5.89439 5.97114 6.13754 6.36670 6.51024 6.65734 6.78651 7.48235 7.92285 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.004014 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.721977 B = 6973.864716 C = 7884.996753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C 0.120 3.880 4 N -0.565 5.565 5 C 0.514 3.486 6 O -0.529 6.529 7 C 0.506 3.494 8 O -0.487 6.487 9 N -0.630 5.630 10 C 0.365 3.635 11 C -0.302 4.302 12 C -0.027 4.027 13 C -0.287 4.287 14 C 0.258 3.742 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.024 3.976 18 N -0.826 5.826 19 Si 1.170 2.830 20 H -0.283 1.283 21 H -0.286 1.286 22 H -0.322 1.322 23 N -0.610 5.610 24 C 0.139 3.861 25 C -0.165 4.165 26 C -0.172 4.172 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.419 0.581 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.117 0.883 36 H 0.284 0.716 37 H 0.127 0.873 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.595 14.143 7.006 25.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C -0.001 4.001 4 N -0.297 5.297 5 C 0.296 3.704 6 O -0.406 6.406 7 C 0.289 3.711 8 O -0.361 6.361 9 N -0.276 5.276 10 C 0.134 3.866 11 C -0.326 4.326 12 C -0.051 4.051 13 C -0.309 4.309 14 C 0.133 3.867 15 C -0.543 4.543 16 H 0.091 0.909 17 C -0.194 4.194 18 N -0.449 5.449 19 Si 1.002 2.998 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.255 1.255 23 N -0.336 5.336 24 C 0.038 3.962 25 C -0.223 4.223 26 C -0.229 4.229 27 H 0.141 0.859 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.256 0.744 33 H 0.178 0.822 34 H 0.167 0.833 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.145 0.855 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.174 13.671 9.144 26.029 hybrid contribution 0.754 -0.320 -2.509 2.639 sum -19.420 13.351 6.635 24.483 Atomic orbital electron populations 1.24006 0.94833 1.03199 0.98335 1.23066 0.96647 0.97992 1.01859 1.21433 0.92487 0.96538 0.89600 1.48114 1.13656 1.51255 1.16672 1.19623 0.83501 0.80407 0.86897 1.90727 1.52763 1.58519 1.38637 1.20567 0.81123 0.79554 0.89855 1.90562 1.50082 1.55440 1.40026 1.43045 1.17365 1.56158 1.11073 1.18408 0.91784 0.91305 0.85055 1.22028 1.08060 1.11801 0.90726 1.21366 0.93284 0.92580 0.97843 1.21833 1.02255 1.08849 0.97952 1.18382 0.90979 0.90396 0.86952 1.20693 1.12332 1.25243 0.96018 0.90890 1.28260 0.94505 0.89603 1.06997 1.70628 1.10061 1.31690 1.32503 0.81749 0.74211 0.74594 0.69262 1.20954 1.21433 1.25491 1.66122 1.19365 1.18479 1.29586 1.21517 1.00126 0.92693 0.81880 1.22171 1.02173 0.99287 0.98686 1.22229 0.99753 0.98011 1.02951 0.85940 0.88201 0.90411 0.86463 0.87486 0.74383 0.82171 0.83267 0.86461 0.90534 0.85485 0.93376 0.89144 0.92872 0.92010 0.89341 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 14.32 67.78 0.97 -1.38 16 2 C -0.18 -3.43 8.88 25.65 0.23 -3.20 16 3 C 0.12 2.09 5.47 85.63 0.47 2.56 16 4 N -0.56 -11.58 2.43 -803.80 -1.95 -13.53 16 5 C 0.51 14.47 7.08 87.24 0.62 15.09 16 6 O -0.53 -16.77 12.77 -3.28 -0.04 -16.81 16 7 C 0.51 16.60 7.61 87.24 0.66 17.26 16 8 O -0.49 -15.81 8.81 -3.29 -0.03 -15.84 16 9 N -0.63 -24.32 5.40 -309.70 -1.67 -25.99 16 10 C 0.37 16.41 7.53 133.31 1.00 17.42 16 11 C -0.30 -12.39 8.87 22.73 0.20 -12.19 16 12 C -0.03 -1.06 10.15 22.39 0.23 -0.83 16 13 C -0.29 -13.17 9.83 22.87 0.22 -12.95 16 14 C 0.26 13.60 6.31 40.20 0.25 13.85 16 15 C -0.51 -28.54 9.52 23.47 0.22 -28.32 16 16 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 17 C 0.02 1.36 5.52 85.29 0.47 1.83 16 18 N -0.83 -46.29 13.65 21.84 0.30 -46.00 16 19 Si 1.17 58.35 25.98 68.60 1.78 60.13 16 20 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.29 -14.51 6.38 99.48 0.63 -13.87 16 22 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 23 N -0.61 -31.13 4.84 -186.43 -0.90 -32.04 16 24 C 0.14 2.11 3.28 44.99 0.15 2.26 16 25 C -0.17 -2.76 9.07 71.98 0.65 -2.11 16 26 C -0.17 -2.76 9.11 71.98 0.66 -2.11 16 27 H 0.12 1.08 7.84 -2.91 -0.02 1.06 16 28 H 0.10 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.08 2.00 7.72 -2.91 -0.02 1.98 16 30 H 0.12 1.17 7.39 -2.38 -0.02 1.15 16 31 H 0.11 2.28 5.44 -2.39 -0.01 2.27 16 32 H 0.42 15.91 8.30 -92.71 -0.77 15.14 16 33 H 0.16 6.00 5.16 -9.69 -0.05 5.95 16 34 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 35 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 36 H 0.28 15.31 8.73 -92.71 -0.81 14.50 16 37 H 0.13 1.08 7.68 -2.39 -0.02 1.06 16 38 H 0.05 1.10 6.60 -2.39 -0.02 1.08 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 1.23 5.86 -2.39 -0.01 1.21 16 Total: -1.00 -64.98 352.54 4.62 -60.36 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.12 Total: 22.51 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 7.01 Total: 7.20 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.23 Total: -117.55 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.07 Total: -32.65 kcal Atomic # 14 Polarization: 58.35 SS G_CDS: 1.78 Total: 60.13 kcal Total: -64.98 4.62 -60.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890134777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.724 kcal (2) G-P(sol) polarization free energy of solvation -64.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds