Wall clock time and date at job start Tue Mar 31 2020 12:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.41583 * 2 1 4 4 C 1.54680 * 110.39400 * 237.85166 * 2 1 3 5 5 C 1.55158 * 101.67906 * 204.36432 * 4 2 1 6 6 C 1.54319 * 102.94221 * 35.33720 * 5 4 2 7 7 H 1.08993 * 109.88767 * 97.22648 * 6 5 4 8 8 C 1.53002 * 110.00960 * 218.32192 * 6 5 4 9 9 N 1.47032 * 107.27052 * 337.80501 * 6 5 4 10 10 C 1.34770 * 125.64649 * 178.90853 * 9 6 5 11 11 O 1.21355 * 119.99756 * 174.01145 * 10 9 6 12 12 C 1.49365 * 120.00453 * 354.00977 * 10 9 6 13 13 O 1.21358 * 119.99608 * 353.95336 * 12 10 9 14 14 N 1.34770 * 120.00112 * 173.95334 * 12 10 9 15 15 C 1.39118 * 119.99907 * 183.65181 * 14 12 10 16 16 C 1.39704 * 119.57719 * 340.12807 * 15 14 12 17 17 C 1.38648 * 119.49404 * 179.97438 * 16 15 14 18 18 C 1.38349 * 118.67032 * 0.02562 * 17 16 15 19 19 C 1.40587 * 119.13698 * 359.97438 * 18 17 16 20 20 C 1.41342 * 119.78902 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99459 * 5.66972 * 20 19 18 22 22 C 1.40021 * 120.00296 * 185.65474 * 20 19 18 23 23 N 1.30747 * 120.00273 * 5.64585 * 22 20 19 24 24 Si 1.86799 * 119.99994 * 185.64348 * 22 20 19 25 25 H 1.48496 * 109.47311 * 95.00298 * 24 22 20 26 26 H 1.48512 * 109.47008 * 215.00193 * 24 22 20 27 27 H 1.48496 * 109.47291 * 334.99801 * 24 22 20 28 28 N 1.31939 * 119.57662 * 159.86410 * 15 14 12 29 29 H 1.09001 * 109.47219 * 304.20563 * 1 2 3 30 30 H 1.09004 * 109.47283 * 64.20579 * 1 2 3 31 31 H 1.09005 * 109.47261 * 184.20876 * 1 2 3 32 32 H 1.08998 * 111.10592 * 86.19216 * 4 2 1 33 33 H 1.09005 * 110.85019 * 322.42203 * 4 2 1 34 34 H 1.08999 * 110.71810 * 276.96936 * 5 4 2 35 35 H 1.09004 * 110.86918 * 153.77074 * 5 4 2 36 36 H 1.09005 * 109.47436 * 180.87186 * 8 6 5 37 37 H 1.09001 * 109.46697 * 300.86754 * 8 6 5 38 38 H 1.09002 * 109.47220 * 60.86814 * 8 6 5 39 39 H 0.97005 * 120.00520 * 3.64984 * 14 12 10 40 40 H 1.07996 * 120.25449 * 0.03029 * 16 15 14 41 41 H 1.08005 * 120.66726 * 180.02562 * 17 16 15 42 42 H 1.08007 * 120.42805 * 180.02562 * 18 17 16 43 43 H 0.96995 * 120.00059 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0690 -0.7715 -1.2275 5 6 3.4758 -1.2022 -0.7349 6 6 3.2462 -1.4811 0.7654 7 1 3.0937 -2.5485 0.9250 8 6 4.4505 -1.0007 1.5776 9 7 2.0430 -0.7383 1.1684 10 6 1.4964 -0.7373 2.4003 11 8 0.5640 -0.0016 2.6497 12 6 2.0381 -1.6415 3.4585 13 8 2.8957 -2.4543 3.1814 14 7 1.5745 -1.5549 4.7210 15 6 2.1318 -2.3436 5.7223 16 6 2.8509 -3.4905 5.3768 17 6 3.4060 -4.2750 6.3761 18 6 3.2285 -3.8945 7.6944 19 6 2.4946 -2.7294 7.9776 20 6 2.3052 -2.3276 9.3194 21 1 2.7991 -2.8616 10.1178 22 6 1.4776 -1.2371 9.6137 23 7 0.7936 -0.6596 8.6607 24 14 1.3508 -0.6073 11.3677 25 1 2.3023 0.5164 11.5602 26 1 -0.0331 -0.1337 11.6248 27 1 1.6822 -1.7039 12.3126 28 7 1.9790 -1.9961 6.9859 29 1 -0.3634 0.5777 0.8499 30 1 -0.3634 0.4472 -0.9253 31 1 -0.3634 -1.0249 0.0754 32 1 2.1424 -0.1207 -2.0988 33 1 1.4474 -1.6407 -1.4431 34 1 4.1959 -0.3954 -0.8714 35 1 3.8077 -2.1045 -1.2485 36 1 4.2860 -1.2158 2.6335 37 1 5.3478 -1.5175 1.2371 38 1 4.5758 0.0735 1.4408 39 1 0.8522 -0.9425 4.9316 40 1 2.9741 -3.7634 4.3392 41 1 3.9659 -5.1653 6.1304 42 1 3.6490 -4.4845 8.4954 43 1 0.2201 0.0955 8.8646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890190833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:15 Heat of formation + Delta-G solvation = -11.871306 kcal Electronic energy + Delta-G solvation = -26836.017108 eV Core-core repulsion = 23075.042266 eV Total energy + Delta-G solvation = -3760.974842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98911 -39.38438 -37.83177 -37.52147 -34.49468 -33.30642 -32.77205 -31.74857 -30.47270 -29.40429 -28.45615 -25.96131 -24.92459 -24.14831 -22.49175 -21.68496 -21.31076 -20.48455 -19.11778 -17.61845 -17.41827 -16.89328 -16.32363 -16.06564 -15.47870 -15.02790 -14.71808 -14.49869 -14.12074 -13.98814 -13.54026 -13.51479 -13.34157 -13.09070 -12.93436 -12.82076 -12.25953 -12.13569 -12.07072 -11.91111 -11.65118 -11.40392 -11.27996 -11.09572 -10.98450 -10.91819 -10.80024 -10.68827 -10.39512 -10.10307 -9.85148 -9.24279 -8.89764 -8.70728 -8.10963 -7.74620 -7.22443 -6.47205 -4.54210 1.54002 2.40540 2.73300 2.94232 3.08875 3.11945 3.20719 3.56204 3.65641 3.93737 4.33983 4.34537 4.63329 4.69720 4.75370 4.97040 5.07153 5.17738 5.34554 5.43055 5.49990 5.54534 5.61539 5.73130 5.82343 5.83840 5.97894 6.05015 6.08707 6.13201 6.24756 6.34931 6.46543 6.66111 6.71130 6.75111 7.10348 7.23845 7.35484 7.40405 7.64373 7.81115 7.94018 8.03929 8.23734 8.44171 8.65853 8.89613 9.96982 10.28019 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021221 B = 0.003358 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.140926 B = 8336.331798 C = 9228.416053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 H 0.079 0.921 4 C -0.130 4.130 5 C -0.130 4.130 6 C 0.132 3.868 7 H 0.093 0.907 8 C -0.168 4.168 9 N -0.588 5.588 10 C 0.528 3.472 11 O -0.516 6.516 12 C 0.503 3.497 13 O -0.494 6.494 14 N -0.611 5.611 15 C 0.350 3.650 16 C -0.315 4.315 17 C -0.050 4.050 18 C -0.283 4.283 19 C 0.279 3.721 20 C -0.434 4.434 21 H 0.087 0.913 22 C 0.072 3.928 23 N -0.721 5.721 24 Si 0.908 3.092 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.261 1.261 28 N -0.505 5.505 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.419 0.581 40 H 0.140 0.860 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 1.657 -17.130 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.096 0.904 4 C -0.168 4.168 5 C -0.168 4.168 6 C 0.029 3.971 7 H 0.111 0.889 8 C -0.226 4.226 9 N -0.324 5.324 10 C 0.311 3.689 11 O -0.392 6.392 12 C 0.284 3.716 13 O -0.370 6.370 14 N -0.256 5.256 15 C 0.116 3.884 16 C -0.340 4.340 17 C -0.075 4.075 18 C -0.306 4.306 19 C 0.153 3.847 20 C -0.466 4.466 21 H 0.105 0.895 22 C -0.154 4.154 23 N -0.343 5.343 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.185 1.185 28 N -0.223 5.223 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.256 0.744 40 H 0.157 0.843 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.468 2.423 -16.945 17.181 hybrid contribution 0.084 -0.087 0.725 0.735 sum 1.551 2.336 -16.221 16.461 Atomic orbital electron populations 1.22129 0.93705 1.03097 1.03292 1.21933 0.95317 0.95677 0.83969 0.90352 1.22832 0.96474 1.00689 0.96800 1.22768 0.97220 1.02528 0.94316 1.21786 0.84406 0.97373 0.93555 0.88873 1.22348 0.96892 1.00352 1.02995 1.48417 1.28065 1.47554 1.08365 1.19815 0.83312 0.83386 0.82341 1.90727 1.28370 1.40102 1.79972 1.19828 0.83186 0.85059 0.83518 1.90580 1.30225 1.35576 1.80588 1.42877 1.36158 1.40557 1.06053 1.18446 0.93633 0.88267 0.88030 1.21843 1.11927 0.99277 1.00930 1.20835 0.96607 0.97082 0.92948 1.21767 1.11054 1.02209 0.95564 1.18171 0.87544 0.87192 0.91797 1.19583 1.23959 1.11575 0.91502 0.89540 1.26041 0.94341 0.96062 0.98912 1.70059 1.16007 1.15179 1.33015 0.86304 0.78301 0.79778 0.82370 1.19484 1.20144 1.18515 1.67978 1.26149 1.32021 0.96160 0.89835 0.91764 0.92442 0.89727 0.90355 0.90445 0.89834 0.90024 0.91490 0.93190 0.74378 0.84304 0.88173 0.88092 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.60 37.15 0.32 -1.44 16 2 C 0.13 1.40 3.73 -66.54 -0.25 1.15 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -0.98 6.49 -24.71 -0.16 -1.14 16 5 C -0.13 -1.03 6.48 -24.90 -0.16 -1.19 16 6 C 0.13 1.53 2.80 -66.95 -0.19 1.34 16 7 H 0.09 1.19 7.15 -51.93 -0.37 0.82 16 8 C -0.17 -2.10 8.77 37.16 0.33 -1.77 16 9 N -0.59 -7.85 2.98 -156.27 -0.47 -8.32 16 10 C 0.53 8.82 7.41 -11.63 -0.09 8.73 16 11 O -0.52 -9.39 14.44 5.49 0.08 -9.31 16 12 C 0.50 9.51 7.10 -11.63 -0.08 9.42 16 13 O -0.49 -9.44 8.69 5.49 0.05 -9.39 16 14 N -0.61 -13.07 5.40 -11.83 -0.06 -13.14 16 15 C 0.35 8.69 7.52 -155.08 -1.17 7.53 16 16 C -0.32 -7.45 8.91 -38.88 -0.35 -7.80 16 17 C -0.05 -1.15 10.15 -39.39 -0.40 -1.55 16 18 C -0.28 -6.98 9.83 -38.66 -0.38 -7.36 16 19 C 0.28 7.64 6.53 -85.00 -0.56 7.09 16 20 C -0.43 -11.54 9.13 -37.73 -0.34 -11.88 16 21 H 0.09 2.14 7.85 -52.48 -0.41 1.73 16 22 C 0.07 1.81 5.48 -17.35 -0.10 1.71 16 23 N -0.72 -19.00 11.53 55.55 0.64 -18.36 16 24 Si 0.91 18.54 29.56 -169.99 -5.03 13.52 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 28 N -0.50 -13.84 7.96 -10.28 -0.08 -13.92 16 29 H 0.08 1.10 6.26 -51.93 -0.33 0.78 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.08 0.55 7.86 -51.93 -0.41 0.15 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.31 5.13 -51.93 -0.27 1.04 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.42 8.80 8.30 -40.82 -0.34 8.47 16 40 H 0.14 3.14 5.09 -53.27 -0.27 2.87 16 41 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 42 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 43 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -29.98 347.92 -8.94 -38.92 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.75 Total: 11.93 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -3.57 Total: 2.84 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.03 Total: -53.75 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.13 Total: -18.71 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.98 -8.94 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890190833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.051 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds