Wall clock time and date at job start Tue Mar 31 2020 12:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.41583 * 2 1 4 4 C 1.54680 * 110.39400 * 237.85166 * 2 1 3 5 5 C 1.55158 * 101.67906 * 204.36432 * 4 2 1 6 6 C 1.54319 * 102.94221 * 35.33720 * 5 4 2 7 7 H 1.08993 * 109.88767 * 97.22648 * 6 5 4 8 8 C 1.53002 * 110.00960 * 218.32192 * 6 5 4 9 9 N 1.47032 * 107.27052 * 337.80501 * 6 5 4 10 10 C 1.34770 * 125.64649 * 178.90853 * 9 6 5 11 11 O 1.21355 * 119.99756 * 174.01145 * 10 9 6 12 12 C 1.49365 * 120.00453 * 354.00977 * 10 9 6 13 13 O 1.21358 * 119.99608 * 353.95336 * 12 10 9 14 14 N 1.34770 * 120.00112 * 173.95334 * 12 10 9 15 15 C 1.39118 * 119.99907 * 183.65181 * 14 12 10 16 16 C 1.39704 * 119.57719 * 340.12807 * 15 14 12 17 17 C 1.38648 * 119.49404 * 179.97438 * 16 15 14 18 18 C 1.38349 * 118.67032 * 0.02562 * 17 16 15 19 19 C 1.40587 * 119.13698 * 359.97438 * 18 17 16 20 20 C 1.41342 * 119.78902 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99459 * 5.66972 * 20 19 18 22 22 C 1.40021 * 120.00296 * 185.65474 * 20 19 18 23 23 N 1.30747 * 120.00273 * 5.64585 * 22 20 19 24 24 Si 1.86799 * 119.99994 * 185.64348 * 22 20 19 25 25 H 1.48496 * 109.47311 * 95.00298 * 24 22 20 26 26 H 1.48512 * 109.47008 * 215.00193 * 24 22 20 27 27 H 1.48496 * 109.47291 * 334.99801 * 24 22 20 28 28 N 1.31939 * 119.57662 * 159.86410 * 15 14 12 29 29 H 1.09001 * 109.47219 * 304.20563 * 1 2 3 30 30 H 1.09004 * 109.47283 * 64.20579 * 1 2 3 31 31 H 1.09005 * 109.47261 * 184.20876 * 1 2 3 32 32 H 1.08998 * 111.10592 * 86.19216 * 4 2 1 33 33 H 1.09005 * 110.85019 * 322.42203 * 4 2 1 34 34 H 1.08999 * 110.71810 * 276.96936 * 5 4 2 35 35 H 1.09004 * 110.86918 * 153.77074 * 5 4 2 36 36 H 1.09005 * 109.47436 * 180.87186 * 8 6 5 37 37 H 1.09001 * 109.46697 * 300.86754 * 8 6 5 38 38 H 1.09002 * 109.47220 * 60.86814 * 8 6 5 39 39 H 0.97005 * 120.00520 * 3.64984 * 14 12 10 40 40 H 1.07996 * 120.25449 * 0.03029 * 16 15 14 41 41 H 1.08005 * 120.66726 * 180.02562 * 17 16 15 42 42 H 1.08007 * 120.42805 * 180.02562 * 18 17 16 43 43 H 0.96995 * 120.00059 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0690 -0.7715 -1.2275 5 6 3.4758 -1.2022 -0.7349 6 6 3.2462 -1.4811 0.7654 7 1 3.0937 -2.5485 0.9250 8 6 4.4505 -1.0007 1.5776 9 7 2.0430 -0.7383 1.1684 10 6 1.4964 -0.7373 2.4003 11 8 0.5640 -0.0016 2.6497 12 6 2.0381 -1.6415 3.4585 13 8 2.8957 -2.4543 3.1814 14 7 1.5745 -1.5549 4.7210 15 6 2.1318 -2.3436 5.7223 16 6 2.8509 -3.4905 5.3768 17 6 3.4060 -4.2750 6.3761 18 6 3.2285 -3.8945 7.6944 19 6 2.4946 -2.7294 7.9776 20 6 2.3052 -2.3276 9.3194 21 1 2.7991 -2.8616 10.1178 22 6 1.4776 -1.2371 9.6137 23 7 0.7936 -0.6596 8.6607 24 14 1.3508 -0.6073 11.3677 25 1 2.3023 0.5164 11.5602 26 1 -0.0331 -0.1337 11.6248 27 1 1.6822 -1.7039 12.3126 28 7 1.9790 -1.9961 6.9859 29 1 -0.3634 0.5777 0.8499 30 1 -0.3634 0.4472 -0.9253 31 1 -0.3634 -1.0249 0.0754 32 1 2.1424 -0.1207 -2.0988 33 1 1.4474 -1.6407 -1.4431 34 1 4.1959 -0.3954 -0.8714 35 1 3.8077 -2.1045 -1.2485 36 1 4.2860 -1.2158 2.6335 37 1 5.3478 -1.5175 1.2371 38 1 4.5758 0.0735 1.4408 39 1 0.8522 -0.9425 4.9316 40 1 2.9741 -3.7634 4.3392 41 1 3.9659 -5.1653 6.1304 42 1 3.6490 -4.4845 8.4954 43 1 0.2201 0.0955 8.8646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890190833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:14 Heat of formation + Delta-G solvation = -29.967942 kcal Electronic energy + Delta-G solvation = -26836.801837 eV Core-core repulsion = 23075.042266 eV Total energy + Delta-G solvation = -3761.759571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.33847 -40.83036 -39.42962 -38.85324 -36.20353 -35.15504 -33.69391 -32.74537 -32.37597 -31.26521 -29.37767 -27.75149 -26.46220 -24.95662 -23.91449 -23.55075 -22.36945 -21.85733 -20.54369 -19.40789 -18.77651 -18.19400 -17.66759 -17.52963 -16.92718 -16.60376 -16.32471 -16.21608 -15.54456 -15.10282 -14.98684 -14.73295 -14.50915 -14.26536 -14.18605 -13.96699 -13.86311 -13.69396 -13.13655 -13.04914 -12.93965 -12.76245 -12.73396 -12.62651 -12.42804 -12.12384 -11.89598 -11.83673 -11.60947 -11.58310 -11.44012 -11.04410 -10.37554 -10.04315 -9.86557 -9.68835 -9.11153 -8.35924 -6.53759 0.05111 0.89457 1.09633 1.15733 1.41160 1.53251 1.56056 2.05134 2.22321 2.33553 2.83558 3.12556 3.55803 3.67951 3.86814 3.94792 4.09455 4.28396 4.29593 4.34492 4.45137 4.52546 4.59714 4.71827 4.76632 4.82490 4.85342 4.87489 4.90876 4.97230 5.12649 5.16663 5.19586 5.20678 5.26588 5.37889 5.47270 5.53298 5.56577 5.84848 5.92595 6.11714 6.19201 6.29114 6.58338 6.72568 6.83598 6.95763 8.03720 8.41865 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021221 B = 0.003358 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.140926 B = 8336.331798 C = 9228.416053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.119 4.119 6 C 0.122 3.878 7 H 0.080 0.920 8 C -0.164 4.164 9 N -0.579 5.579 10 C 0.528 3.472 11 O -0.539 6.539 12 C 0.503 3.497 13 O -0.494 6.494 14 N -0.620 5.620 15 C 0.338 3.662 16 C -0.321 4.321 17 C -0.046 4.046 18 C -0.299 4.299 19 C 0.246 3.754 20 C -0.466 4.466 21 H 0.095 0.905 22 C 0.026 3.974 23 N -0.758 5.758 24 Si 0.989 3.011 25 H -0.266 1.266 26 H -0.269 1.269 27 H -0.252 1.252 28 N -0.537 5.537 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.417 0.583 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.117 0.883 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 1.740 -19.121 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 H 0.105 0.895 4 C -0.155 4.155 5 C -0.157 4.157 6 C 0.020 3.980 7 H 0.098 0.902 8 C -0.222 4.222 9 N -0.313 5.313 10 C 0.310 3.690 11 O -0.417 6.417 12 C 0.285 3.715 13 O -0.369 6.369 14 N -0.265 5.265 15 C 0.104 3.896 16 C -0.346 4.346 17 C -0.070 4.070 18 C -0.322 4.322 19 C 0.119 3.881 20 C -0.497 4.497 21 H 0.113 0.887 22 C -0.196 4.196 23 N -0.380 5.380 24 Si 0.810 3.190 25 H -0.191 1.191 26 H -0.194 1.194 27 H -0.175 1.175 28 N -0.256 5.256 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.254 0.746 40 H 0.167 0.833 41 H 0.156 0.844 42 H 0.135 0.865 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.380 2.483 -19.012 19.321 hybrid contribution -0.131 -0.152 1.177 1.194 sum 2.250 2.331 -17.836 18.128 Atomic orbital electron populations 1.22076 0.93993 1.02164 1.03569 1.22321 0.95251 0.96412 0.83931 0.89454 1.22850 0.95706 1.00922 0.96041 1.22769 0.97903 1.04143 0.90839 1.22011 0.83188 0.96388 0.96401 0.90204 1.22280 0.98202 1.01078 1.00601 1.48607 1.28064 1.46912 1.07766 1.19344 0.83440 0.83170 0.83024 1.90726 1.29440 1.41021 1.80492 1.20348 0.82746 0.85221 0.83214 1.90546 1.30035 1.35736 1.80612 1.42926 1.36471 1.40662 1.06476 1.18809 0.93670 0.89013 0.88113 1.22105 1.11744 0.99003 1.01714 1.21239 0.95875 0.97851 0.92073 1.21970 1.11324 1.01952 0.96926 1.18694 0.88475 0.88404 0.92511 1.19977 1.25103 1.12912 0.91730 0.88681 1.26996 0.93338 0.95691 1.03575 1.70163 1.16633 1.15731 1.35504 0.85090 0.78451 0.79102 0.76404 1.19123 1.19366 1.17519 1.67968 1.27424 1.33073 0.97165 0.92825 0.88676 0.93440 0.86499 0.90036 0.88940 0.87721 0.94032 0.89560 0.92533 0.74645 0.83306 0.84434 0.86475 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.60 71.98 0.62 -2.60 16 2 C 0.12 2.28 3.73 45.39 0.17 2.45 16 3 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 4 C -0.12 -1.29 6.49 31.91 0.21 -1.08 16 5 C -0.12 -1.42 6.48 31.78 0.21 -1.21 16 6 C 0.12 2.64 2.80 45.34 0.13 2.77 16 7 H 0.08 1.96 7.15 -2.39 -0.02 1.94 16 8 C -0.16 -3.92 8.77 71.98 0.63 -3.28 16 9 N -0.58 -15.01 2.98 -766.69 -2.29 -17.29 16 10 C 0.53 18.05 7.41 87.24 0.65 18.69 16 11 O -0.54 -20.36 14.44 -3.26 -0.05 -20.41 16 12 C 0.50 19.67 7.10 87.24 0.62 20.29 16 13 O -0.49 -19.27 8.69 -3.27 -0.03 -19.30 16 14 N -0.62 -27.89 5.40 -309.71 -1.67 -29.56 16 15 C 0.34 17.44 7.52 133.30 1.00 18.45 16 16 C -0.32 -15.40 8.91 22.72 0.20 -15.19 16 17 C -0.05 -2.10 10.15 22.39 0.23 -1.87 16 18 C -0.30 -14.95 9.83 22.87 0.22 -14.72 16 19 C 0.25 13.89 6.53 40.20 0.26 14.15 16 20 C -0.47 -25.39 9.13 23.47 0.21 -25.18 16 21 H 0.10 4.79 7.85 -2.91 -0.02 4.77 16 22 C 0.03 1.32 5.48 85.29 0.47 1.79 16 23 N -0.76 -41.34 11.53 21.84 0.25 -41.09 16 24 Si 0.99 38.43 29.56 68.60 2.03 40.46 16 25 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 27 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 28 N -0.54 -30.75 7.96 -186.42 -1.48 -32.23 16 29 H 0.05 1.42 6.26 -2.39 -0.01 1.40 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.90 8.05 -2.38 -0.02 0.88 16 34 H 0.09 0.89 7.86 -2.39 -0.02 0.87 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.04 1.34 5.13 -2.38 -0.01 1.33 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.42 18.74 8.30 -92.70 -0.77 17.97 16 40 H 0.15 6.76 5.09 -15.28 -0.08 6.68 16 41 H 0.14 5.12 8.06 -2.91 -0.02 5.10 16 42 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 43 H 0.28 13.83 8.29 -92.71 -0.77 13.06 16 Total: -1.00 -68.62 347.92 2.80 -65.82 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: 0.22 Total: 40.16 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.83 Total: 13.45 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -5.19 Total: -120.18 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.08 Total: -39.71 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -68.62 2.80 -65.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890190833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.847 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds