Wall clock time and date at job start Tue Mar 31 2020 12:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.87291 * 2 1 4 4 C 1.54321 * 110.01718 * 238.89718 * 2 1 3 5 5 C 1.55157 * 102.94010 * 262.70334 * 4 2 1 6 6 C 1.55125 * 101.48995 * 324.33382 * 5 4 2 7 7 H 1.09007 * 110.49194 * 278.45384 * 6 5 4 8 8 C 1.52996 * 110.34503 * 156.06407 * 6 5 4 9 9 N 1.47033 * 109.88120 * 121.00918 * 2 1 3 10 10 C 1.34773 * 125.64857 * 300.59877 * 9 2 1 11 11 O 1.21353 * 119.99976 * 177.75308 * 10 9 2 12 12 C 1.49375 * 120.00052 * 357.75852 * 10 9 2 13 13 O 1.21352 * 119.99833 * 352.69616 * 12 10 9 14 14 N 1.34775 * 120.00053 * 172.69327 * 12 10 9 15 15 C 1.39106 * 120.00071 * 186.06891 * 14 12 10 16 16 C 1.39712 * 119.57748 * 19.46487 * 15 14 12 17 17 C 1.38652 * 119.49262 * 180.02562 * 16 15 14 18 18 C 1.38346 * 118.67018 * 359.72493 * 17 16 15 19 19 C 1.40591 * 119.13698 * 0.54261 * 18 17 16 20 20 C 1.41345 * 119.78497 * 179.72897 * 19 18 17 21 21 H 1.07990 * 120.00003 * 4.80740 * 20 19 18 22 22 C 1.40034 * 119.99547 * 184.81820 * 20 19 18 23 23 N 1.30745 * 119.99686 * 184.62368 * 22 20 19 24 24 Si 1.86796 * 120.00106 * 4.89358 * 22 20 19 25 25 H 1.48507 * 109.47007 * 179.72486 * 24 22 20 26 26 H 1.48497 * 109.47335 * 299.72502 * 24 22 20 27 27 H 1.48500 * 109.47160 * 59.73210 * 24 22 20 28 28 N 1.31940 * 119.58156 * 199.48597 * 15 14 12 29 29 H 1.08996 * 109.47769 * 302.70042 * 1 2 3 30 30 H 1.09002 * 109.46720 * 62.69998 * 1 2 3 31 31 H 1.08997 * 109.47319 * 182.69497 * 1 2 3 32 32 H 1.08998 * 110.71648 * 21.06759 * 4 2 1 33 33 H 1.09003 * 110.72381 * 144.34137 * 4 2 1 34 34 H 1.09002 * 111.00124 * 82.57347 * 5 4 2 35 35 H 1.09002 * 111.00405 * 206.38189 * 5 4 2 36 36 H 1.09003 * 109.46642 * 308.15080 * 8 6 5 37 37 H 1.08995 * 109.47666 * 68.15402 * 8 6 5 38 38 H 1.09000 * 109.47165 * 188.15597 * 8 6 5 39 39 H 0.97002 * 119.99715 * 6.07878 * 14 12 10 40 40 H 1.08000 * 120.25394 * 0.04530 * 16 15 14 41 41 H 1.08000 * 120.66700 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.43451 * 180.28700 * 18 17 16 43 43 H 0.97006 * 119.99775 * 355.26647 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2415 5 6 2.3575 -2.1680 -0.6900 6 6 2.8642 -1.8432 0.7398 7 1 3.9147 -1.5532 0.7157 8 6 2.6642 -3.0479 1.6615 9 7 2.0299 -0.7123 1.1851 10 6 1.7728 -0.3826 2.4663 11 8 2.2068 -1.0687 3.3683 12 6 0.9534 0.8273 2.7761 13 8 0.6311 1.5861 1.8856 14 7 0.5721 1.0762 4.0446 15 6 -0.2943 2.1301 4.3164 16 6 -1.0779 2.6611 3.2888 17 6 -1.9405 3.7119 3.5616 18 6 -2.0025 4.2013 4.8541 19 6 -1.1842 3.6280 5.8432 20 6 -1.2323 4.1212 7.1669 21 1 -1.9505 4.8823 7.4338 22 6 -0.3485 3.6231 8.1321 23 7 -0.4520 4.0123 9.3760 24 14 0.9830 2.4085 7.6412 25 1 1.7842 2.0423 8.8368 26 1 0.3551 1.1884 7.0734 27 1 1.8683 3.0292 6.6233 28 7 -0.3652 2.6157 5.5411 29 1 -0.3634 0.5551 0.8647 30 1 -0.3633 0.4714 -0.9132 31 1 -0.3634 -1.0265 0.0483 32 1 1.2962 -0.7906 -2.0199 33 1 2.9685 -0.2809 -1.6161 34 1 1.4521 -2.7741 -0.6589 35 1 3.1341 -2.6593 -1.2763 36 1 1.6306 -3.3876 1.5961 37 1 3.3316 -3.8538 1.3561 38 1 2.8880 -2.7605 2.6888 39 1 0.9019 0.5206 4.7681 40 1 -1.0126 2.2561 2.2898 41 1 -2.5552 4.1365 2.7817 42 1 -2.6678 5.0160 5.0992 43 1 -1.0952 4.6969 9.6181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890190834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:19 Heat of formation + Delta-G solvation = -22.083819 kcal Electronic energy + Delta-G solvation = -27104.030534 eV Core-core repulsion = 23342.612844 eV Total energy + Delta-G solvation = -3761.417690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25004 -39.68767 -38.18792 -37.80463 -34.83501 -33.56291 -32.74293 -31.91203 -31.19711 -29.75069 -28.48229 -25.92152 -25.12281 -24.34355 -22.83313 -21.88396 -21.18897 -20.62664 -19.48296 -18.35276 -17.75478 -17.12625 -16.55961 -16.17496 -15.80083 -15.16717 -14.81235 -14.70131 -14.38329 -14.10884 -13.86362 -13.57788 -13.49243 -13.29700 -13.01513 -12.78346 -12.53982 -12.39025 -12.26839 -12.02247 -11.95026 -11.78457 -11.53700 -11.23406 -11.02945 -10.86402 -10.68854 -10.44046 -10.34137 -9.95443 -9.65928 -9.21343 -9.14010 -8.93502 -8.63484 -7.84829 -7.49519 -7.29387 -4.84276 1.29194 2.19568 2.48865 2.56960 3.28400 3.41310 3.57952 3.64936 3.97165 4.19597 4.24423 4.36932 4.49892 4.56996 4.59912 4.86117 4.97783 5.10791 5.27531 5.34728 5.37859 5.46227 5.48754 5.56623 5.71002 5.73172 5.74457 5.88815 5.92595 5.95827 6.02050 6.23218 6.32293 6.35664 6.43750 6.52973 6.94321 7.03126 7.13434 7.34014 7.40206 7.47294 7.65201 7.72860 8.02812 8.09960 8.28683 8.57632 9.32008 9.95597 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.003896 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.585822 B = 7184.866315 C = 8305.436257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.132 3.868 3 H 0.090 0.910 4 C -0.131 4.131 5 C -0.129 4.129 6 C 0.133 3.867 7 H 0.081 0.919 8 C -0.173 4.173 9 N -0.586 5.586 10 C 0.530 3.470 11 O -0.514 6.514 12 C 0.504 3.496 13 O -0.481 6.481 14 N -0.624 5.624 15 C 0.384 3.616 16 C -0.310 4.310 17 C -0.034 4.034 18 C -0.271 4.271 19 C 0.272 3.728 20 C -0.472 4.472 21 H 0.085 0.915 22 C 0.044 3.956 23 N -0.802 5.802 24 Si 1.153 2.847 25 H -0.330 1.330 26 H -0.281 1.281 27 H -0.293 1.293 28 N -0.595 5.595 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.419 0.581 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 -11.038 -19.067 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.029 3.971 3 H 0.108 0.892 4 C -0.169 4.169 5 C -0.167 4.167 6 C 0.031 3.969 7 H 0.099 0.901 8 C -0.231 4.231 9 N -0.321 5.321 10 C 0.312 3.688 11 O -0.390 6.390 12 C 0.286 3.714 13 O -0.356 6.356 14 N -0.270 5.270 15 C 0.154 3.846 16 C -0.335 4.335 17 C -0.058 4.058 18 C -0.294 4.294 19 C 0.148 3.852 20 C -0.504 4.504 21 H 0.103 0.897 22 C -0.178 4.178 23 N -0.423 5.423 24 Si 0.988 3.012 25 H -0.263 1.263 26 H -0.209 1.209 27 H -0.222 1.222 28 N -0.320 5.320 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.257 0.743 40 H 0.154 0.846 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.528 -12.041 -17.819 22.475 hybrid contribution -1.804 1.316 -0.866 2.394 sum 4.725 -10.726 -18.685 22.056 Atomic orbital electron populations 1.22596 0.94140 1.01954 1.04974 1.21758 0.95463 0.96573 0.83291 0.89171 1.22762 1.01971 0.95326 0.96836 1.22916 1.02100 0.97138 0.94553 1.22098 0.94504 0.86336 0.93995 0.90097 1.22286 1.02033 0.96221 1.02514 1.48400 1.49091 1.29922 1.04694 1.19656 0.81523 0.85411 0.82167 1.90698 1.51738 1.51656 1.44914 1.19892 0.81486 0.86883 0.83182 1.90608 1.52789 1.46960 1.45219 1.42949 1.44638 1.30601 1.08815 1.18024 0.88315 0.87421 0.90875 1.21401 1.06052 1.05953 1.00047 1.20902 0.95117 0.94150 0.95607 1.21636 1.07704 1.06242 0.93807 1.18276 0.86911 0.86242 0.93729 1.20763 1.16703 1.19807 0.93102 0.89699 1.27788 0.99721 0.98732 0.91541 1.70652 1.31357 1.22070 1.18230 0.81859 0.72434 0.75942 0.70938 1.26299 1.20914 1.22158 1.66026 1.29297 1.18392 1.18331 0.88803 0.91574 0.93251 0.89677 0.90467 0.90329 0.89731 0.92540 0.91885 0.88786 0.74289 0.84585 0.87413 0.87503 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.68 37.15 0.32 -1.66 16 2 C 0.13 1.39 2.84 -66.95 -0.19 1.19 16 3 H 0.09 1.05 7.44 -51.93 -0.39 0.66 16 4 C -0.13 -0.93 6.49 -24.90 -0.16 -1.09 16 5 C -0.13 -0.88 6.51 -24.47 -0.16 -1.04 16 6 C 0.13 1.27 3.78 -66.31 -0.25 1.02 16 7 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.17 -1.72 8.88 37.16 0.33 -1.39 16 9 N -0.59 -7.14 3.00 -156.01 -0.47 -7.61 16 10 C 0.53 8.11 7.53 -11.62 -0.09 8.02 16 11 O -0.51 -8.60 14.00 5.49 0.08 -8.53 16 12 C 0.50 8.73 7.07 -11.62 -0.08 8.65 16 13 O -0.48 -8.42 8.57 5.49 0.05 -8.37 16 14 N -0.62 -12.32 5.40 -11.83 -0.06 -12.38 16 15 C 0.38 8.78 7.50 -155.09 -1.16 7.62 16 16 C -0.31 -6.64 8.81 -38.88 -0.34 -6.98 16 17 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 18 C -0.27 -6.31 9.83 -38.65 -0.38 -6.69 16 19 C 0.27 7.08 6.40 -85.00 -0.54 6.54 16 20 C -0.47 -12.77 9.57 -37.73 -0.36 -13.13 16 21 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 22 C 0.04 1.19 5.52 -17.34 -0.10 1.10 16 23 N -0.80 -21.82 13.65 55.55 0.76 -21.06 16 24 Si 1.15 28.65 25.61 -169.99 -4.35 24.30 16 25 H -0.33 -8.11 7.11 56.52 0.40 -7.70 16 26 H -0.28 -6.80 6.61 56.52 0.37 -6.43 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 N -0.59 -15.15 4.55 -10.28 -0.05 -15.19 16 29 H 0.09 1.32 4.43 -52.50 -0.23 1.09 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.51 7.83 -51.93 -0.41 0.10 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.55 8.01 -51.93 -0.42 0.13 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.19 5.57 -51.93 -0.29 0.90 16 39 H 0.42 8.03 8.31 -40.82 -0.34 7.69 16 40 H 0.14 2.71 5.32 -52.49 -0.28 2.44 16 41 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.11 2.30 8.06 -52.48 -0.42 1.88 16 43 H 0.28 7.35 8.72 -40.82 -0.36 6.99 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -29.50 341.87 -8.21 -37.71 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.75 Total: 4.93 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.56 Total: 1.05 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.18 Total: -56.25 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.12 Total: -16.89 kcal Atomic # 14 Polarization: 28.65 SS G_CDS: -4.35 Total: 24.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.50 -8.21 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890190834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.630 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds