Wall clock time and date at job start Tue Mar 31 2020 12:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.87291 * 2 1 4 4 C 1.54321 * 110.01718 * 238.89718 * 2 1 3 5 5 C 1.55157 * 102.94010 * 262.70334 * 4 2 1 6 6 C 1.55125 * 101.48995 * 324.33382 * 5 4 2 7 7 H 1.09007 * 110.49194 * 278.45384 * 6 5 4 8 8 C 1.52996 * 110.34503 * 156.06407 * 6 5 4 9 9 N 1.47033 * 109.88120 * 121.00918 * 2 1 3 10 10 C 1.34773 * 125.64857 * 300.59877 * 9 2 1 11 11 O 1.21353 * 119.99976 * 177.75308 * 10 9 2 12 12 C 1.49375 * 120.00052 * 357.75852 * 10 9 2 13 13 O 1.21352 * 119.99833 * 352.69616 * 12 10 9 14 14 N 1.34775 * 120.00053 * 172.69327 * 12 10 9 15 15 C 1.39106 * 120.00071 * 186.06891 * 14 12 10 16 16 C 1.39712 * 119.57748 * 19.46487 * 15 14 12 17 17 C 1.38652 * 119.49262 * 180.02562 * 16 15 14 18 18 C 1.38346 * 118.67018 * 359.72493 * 17 16 15 19 19 C 1.40591 * 119.13698 * 0.54261 * 18 17 16 20 20 C 1.41345 * 119.78497 * 179.72897 * 19 18 17 21 21 H 1.07990 * 120.00003 * 4.80740 * 20 19 18 22 22 C 1.40034 * 119.99547 * 184.81820 * 20 19 18 23 23 N 1.30745 * 119.99686 * 184.62368 * 22 20 19 24 24 Si 1.86796 * 120.00106 * 4.89358 * 22 20 19 25 25 H 1.48507 * 109.47007 * 179.72486 * 24 22 20 26 26 H 1.48497 * 109.47335 * 299.72502 * 24 22 20 27 27 H 1.48500 * 109.47160 * 59.73210 * 24 22 20 28 28 N 1.31940 * 119.58156 * 199.48597 * 15 14 12 29 29 H 1.08996 * 109.47769 * 302.70042 * 1 2 3 30 30 H 1.09002 * 109.46720 * 62.69998 * 1 2 3 31 31 H 1.08997 * 109.47319 * 182.69497 * 1 2 3 32 32 H 1.08998 * 110.71648 * 21.06759 * 4 2 1 33 33 H 1.09003 * 110.72381 * 144.34137 * 4 2 1 34 34 H 1.09002 * 111.00124 * 82.57347 * 5 4 2 35 35 H 1.09002 * 111.00405 * 206.38189 * 5 4 2 36 36 H 1.09003 * 109.46642 * 308.15080 * 8 6 5 37 37 H 1.08995 * 109.47666 * 68.15402 * 8 6 5 38 38 H 1.09000 * 109.47165 * 188.15597 * 8 6 5 39 39 H 0.97002 * 119.99715 * 6.07878 * 14 12 10 40 40 H 1.08000 * 120.25394 * 0.04530 * 16 15 14 41 41 H 1.08000 * 120.66700 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.43451 * 180.28700 * 18 17 16 43 43 H 0.97006 * 119.99775 * 355.26647 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2415 5 6 2.3575 -2.1680 -0.6900 6 6 2.8642 -1.8432 0.7398 7 1 3.9147 -1.5532 0.7157 8 6 2.6642 -3.0479 1.6615 9 7 2.0299 -0.7123 1.1851 10 6 1.7728 -0.3826 2.4663 11 8 2.2068 -1.0687 3.3683 12 6 0.9534 0.8273 2.7761 13 8 0.6311 1.5861 1.8856 14 7 0.5721 1.0762 4.0446 15 6 -0.2943 2.1301 4.3164 16 6 -1.0779 2.6611 3.2888 17 6 -1.9405 3.7119 3.5616 18 6 -2.0025 4.2013 4.8541 19 6 -1.1842 3.6280 5.8432 20 6 -1.2323 4.1212 7.1669 21 1 -1.9505 4.8823 7.4338 22 6 -0.3485 3.6231 8.1321 23 7 -0.4520 4.0123 9.3760 24 14 0.9830 2.4085 7.6412 25 1 1.7842 2.0423 8.8368 26 1 0.3551 1.1884 7.0734 27 1 1.8683 3.0292 6.6233 28 7 -0.3652 2.6157 5.5411 29 1 -0.3634 0.5551 0.8647 30 1 -0.3633 0.4714 -0.9132 31 1 -0.3634 -1.0265 0.0483 32 1 1.2962 -0.7906 -2.0199 33 1 2.9685 -0.2809 -1.6161 34 1 1.4521 -2.7741 -0.6589 35 1 3.1341 -2.6593 -1.2763 36 1 1.6306 -3.3876 1.5961 37 1 3.3316 -3.8538 1.3561 38 1 2.8880 -2.7605 2.6888 39 1 0.9019 0.5206 4.7681 40 1 -1.0126 2.2561 2.2898 41 1 -2.5552 4.1365 2.7817 42 1 -2.6678 5.0160 5.0992 43 1 -1.0952 4.6969 9.6181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890190834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:18 Heat of formation + Delta-G solvation = -39.698436 kcal Electronic energy + Delta-G solvation = -27104.794361 eV Core-core repulsion = 23342.612844 eV Total energy + Delta-G solvation = -3762.181517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50772 -41.06380 -39.73321 -38.91864 -36.47191 -35.44152 -33.56130 -33.07092 -32.76802 -31.54007 -29.29579 -27.60758 -26.62585 -25.05045 -24.14274 -23.66350 -22.36256 -21.67481 -20.95410 -20.17733 -19.00963 -18.36117 -17.94313 -17.48595 -17.00462 -16.92149 -16.30447 -15.86194 -15.67862 -15.58675 -15.18858 -14.86793 -14.70502 -14.48148 -14.28861 -14.26843 -14.00153 -13.73564 -13.30429 -13.26221 -13.12782 -12.78414 -12.75245 -12.55637 -12.31089 -12.15730 -11.93968 -11.69273 -11.62109 -11.44949 -11.38832 -11.08417 -10.55453 -10.39389 -9.91478 -9.79549 -9.32447 -9.28059 -6.85724 -0.08785 0.66806 0.78826 1.00986 1.54500 1.64130 1.93512 1.98876 2.23388 2.38057 2.62276 3.01691 3.51615 3.55438 3.68342 3.96741 4.00778 4.11591 4.27399 4.29866 4.35360 4.49044 4.56605 4.58485 4.66147 4.66348 4.68567 4.87671 4.96650 5.03548 5.09052 5.13667 5.18862 5.23913 5.31267 5.32213 5.36584 5.44892 5.56109 5.64933 5.66425 5.85468 6.02176 6.14487 6.32685 6.46039 6.62344 6.76558 7.43530 7.92502 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.003896 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.585822 B = 7184.866315 C = 8305.436257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 H 0.078 0.922 4 C -0.121 4.121 5 C -0.118 4.118 6 C 0.122 3.878 7 H 0.091 0.909 8 C -0.169 4.169 9 N -0.577 5.577 10 C 0.528 3.472 11 O -0.535 6.535 12 C 0.504 3.496 13 O -0.480 6.480 14 N -0.633 5.633 15 C 0.370 3.630 16 C -0.297 4.297 17 C -0.023 4.023 18 C -0.284 4.284 19 C 0.257 3.743 20 C -0.505 4.505 21 H 0.074 0.926 22 C 0.019 3.981 23 N -0.827 5.827 24 Si 1.182 2.818 25 H -0.329 1.329 26 H -0.277 1.277 27 H -0.303 1.303 28 N -0.615 5.615 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.420 0.580 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.120 0.880 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.380 -12.530 -23.299 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.156 4.156 6 C 0.021 3.979 7 H 0.109 0.891 8 C -0.227 4.227 9 N -0.311 5.311 10 C 0.310 3.690 11 O -0.414 6.414 12 C 0.287 3.713 13 O -0.354 6.354 14 N -0.279 5.279 15 C 0.140 3.860 16 C -0.321 4.321 17 C -0.047 4.047 18 C -0.306 4.306 19 C 0.132 3.868 20 C -0.538 4.538 21 H 0.092 0.908 22 C -0.198 4.198 23 N -0.450 5.450 24 Si 1.016 2.984 25 H -0.262 1.262 26 H -0.205 1.205 27 H -0.232 1.232 28 N -0.341 5.341 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.257 0.743 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.138 0.862 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.990 -13.555 -22.120 26.868 hybrid contribution -1.964 1.724 0.115 2.616 sum 5.026 -11.831 -22.005 25.484 Atomic orbital electron populations 1.22508 0.94479 1.01876 1.04338 1.21985 0.95262 0.96578 0.84177 0.90374 1.22766 1.03040 0.94764 0.95256 1.22925 1.03014 0.97171 0.92446 1.22450 0.94720 0.85104 0.95600 0.89115 1.22214 1.02262 0.97232 1.00943 1.48592 1.48223 1.30367 1.03941 1.19259 0.81682 0.84710 0.83330 1.90709 1.52796 1.52015 1.45834 1.20359 0.81178 0.87567 0.82195 1.90591 1.52658 1.47188 1.44968 1.43028 1.44883 1.30108 1.09910 1.18391 0.89035 0.88106 0.90513 1.21815 1.04612 1.05257 1.00438 1.21366 0.94532 0.93136 0.95672 1.21832 1.07659 1.06771 0.94297 1.18480 0.87650 0.86602 0.94061 1.20746 1.17721 1.21084 0.94215 0.90752 1.28330 1.00501 0.99350 0.91642 1.70658 1.32501 1.23377 1.18500 0.81445 0.71291 0.75296 0.70344 1.26200 1.20475 1.23171 1.65929 1.29620 1.18660 1.19899 0.91943 0.89742 0.92748 0.87832 0.88994 0.90181 0.86834 0.93113 0.89347 0.91826 0.74265 0.82714 0.83033 0.86236 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 8.68 71.98 0.62 -2.77 16 2 C 0.12 2.22 2.84 45.33 0.13 2.35 16 3 H 0.08 1.63 7.44 -2.39 -0.02 1.62 16 4 C -0.12 -1.17 6.49 31.78 0.21 -0.96 16 5 C -0.12 -1.08 6.51 32.06 0.21 -0.87 16 6 C 0.12 1.98 3.78 45.54 0.17 2.15 16 7 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 8 C -0.17 -3.04 8.88 71.98 0.64 -2.40 16 9 N -0.58 -12.95 3.00 -765.85 -2.29 -15.25 16 10 C 0.53 15.79 7.53 87.25 0.66 16.45 16 11 O -0.54 -17.94 14.00 -3.25 -0.05 -17.98 16 12 C 0.50 17.10 7.07 87.25 0.62 17.71 16 13 O -0.48 -16.08 8.57 -3.25 -0.03 -16.11 16 14 N -0.63 -24.87 5.40 -309.70 -1.67 -26.54 16 15 C 0.37 16.68 7.50 133.31 1.00 17.68 16 16 C -0.30 -12.10 8.81 22.73 0.20 -11.90 16 17 C -0.02 -0.90 10.15 22.39 0.23 -0.67 16 18 C -0.28 -12.88 9.83 22.87 0.22 -12.66 16 19 C 0.26 13.52 6.40 40.20 0.26 13.78 16 20 C -0.50 -28.25 9.57 23.47 0.22 -28.02 16 21 H 0.07 4.17 8.05 -2.92 -0.02 4.14 16 22 C 0.02 1.09 5.52 85.29 0.47 1.56 16 23 N -0.83 -46.63 13.65 21.84 0.30 -46.34 16 24 Si 1.18 59.81 25.61 68.60 1.76 61.57 16 25 H -0.33 -16.28 7.11 99.48 0.71 -15.57 16 26 H -0.28 -13.60 6.61 99.48 0.66 -12.94 16 27 H -0.30 -15.57 7.11 99.48 0.71 -14.87 16 28 N -0.62 -31.49 4.55 -186.43 -0.85 -32.34 16 29 H 0.06 1.63 4.43 -11.39 -0.05 1.58 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 0.70 7.83 -2.39 -0.02 0.68 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.76 8.01 -2.39 -0.02 0.74 16 35 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.95 8.07 -2.39 -0.02 0.93 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.58 5.57 -2.39 -0.01 1.57 16 39 H 0.42 16.29 8.31 -92.71 -0.77 15.52 16 40 H 0.16 5.75 5.32 -2.92 -0.02 5.73 16 41 H 0.15 4.61 8.06 -2.91 -0.02 4.58 16 42 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 43 H 0.28 15.33 8.72 -92.70 -0.81 14.52 16 Total: -1.00 -65.70 341.87 3.18 -62.52 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.15 Total: 19.05 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 5.86 Total: 11.41 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -4.52 Total: -120.46 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.07 Total: -34.09 kcal Atomic # 14 Polarization: 59.81 SS G_CDS: 1.76 Total: 61.57 kcal Total: -65.70 3.18 -62.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890190834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.823 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds