Wall clock time and date at job start Tue Mar 31 2020 12:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.99811 * 2 1 4 4 C 1.54315 * 109.77178 * 121.15259 * 2 1 3 5 5 C 1.55157 * 102.86529 * 141.88492 * 4 2 1 6 6 C 1.54917 * 101.57718 * 324.30267 * 5 4 2 7 7 H 1.09002 * 110.36267 * 278.17125 * 6 5 4 8 8 C 1.53001 * 110.45634 * 155.89449 * 6 5 4 9 9 N 1.47023 * 109.88046 * 238.89765 * 2 1 3 10 10 C 1.34780 * 125.64553 * 61.68502 * 9 2 1 11 11 O 1.21351 * 119.99517 * 185.81279 * 10 9 2 12 12 C 1.49364 * 120.00150 * 5.80670 * 10 9 2 13 13 O 1.21365 * 119.99781 * 5.83459 * 12 10 9 14 14 N 1.34777 * 120.00189 * 185.82890 * 12 10 9 15 15 C 1.39106 * 120.00164 * 185.62637 * 14 12 10 16 16 C 1.39706 * 119.57923 * 18.67541 * 15 14 12 17 17 C 1.38653 * 119.49347 * 180.02562 * 16 15 14 18 18 C 1.38345 * 118.67096 * 359.72579 * 17 16 15 19 19 C 1.40593 * 119.13720 * 0.55543 * 18 17 16 20 20 C 1.41330 * 119.78785 * 179.70620 * 19 18 17 21 21 H 1.07998 * 120.00120 * 4.94432 * 20 19 18 22 22 C 1.40031 * 119.99947 * 184.94590 * 20 19 18 23 23 N 1.30746 * 120.00211 * 175.04410 * 22 20 19 24 24 Si 1.86799 * 120.00143 * 355.04070 * 22 20 19 25 25 H 1.48500 * 109.47021 * 60.00424 * 24 22 20 26 26 H 1.48504 * 109.47066 * 300.00425 * 24 22 20 27 27 H 1.48504 * 109.47269 * 180.02562 * 24 22 20 28 28 N 1.31934 * 119.57971 * 198.69822 * 15 14 12 29 29 H 1.09001 * 109.47385 * 186.93990 * 1 2 3 30 30 H 1.09003 * 109.47327 * 306.93984 * 1 2 3 31 31 H 1.09000 * 109.47217 * 66.93086 * 1 2 3 32 32 H 1.09004 * 110.92649 * 23.46713 * 4 2 1 33 33 H 1.09002 * 110.74438 * 260.21531 * 4 2 1 34 34 H 1.08997 * 111.00761 * 206.23176 * 5 4 2 35 35 H 1.09003 * 111.03838 * 82.38811 * 5 4 2 36 36 H 1.08998 * 109.47514 * 304.53355 * 8 6 5 37 37 H 1.08999 * 109.47104 * 64.53547 * 8 6 5 38 38 H 1.09003 * 109.46713 * 184.53181 * 8 6 5 39 39 H 0.97000 * 119.99715 * 5.62404 * 14 12 10 40 40 H 1.07999 * 120.25684 * 0.02562 * 16 15 14 41 41 H 1.08000 * 120.66602 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.43492 * 180.26049 * 18 17 16 43 43 H 0.97007 * 119.99560 * 5.00960 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0520 -0.7512 1.2428 5 6 3.2888 -1.5102 0.6935 6 6 2.8190 -1.8764 -0.7366 7 1 2.1969 -2.7712 -0.7140 8 6 4.0226 -2.0888 -1.6569 9 7 2.0300 -0.7142 -1.1839 10 6 1.8085 -0.3614 -2.4657 11 8 2.1814 -1.0836 -3.3668 12 6 1.1040 0.9183 -2.7770 13 8 0.8252 1.6905 -1.8832 14 7 0.7780 1.2155 -4.0506 15 6 0.2284 2.4563 -4.3564 16 6 0.3716 3.5149 -3.4560 17 6 -0.1774 4.7507 -3.7624 18 6 -0.8501 4.8991 -4.9621 19 6 -0.9655 3.7939 -5.8235 20 6 -1.6552 3.9285 -7.0497 21 1 -2.0221 4.8958 -7.3596 22 6 -1.8628 2.8075 -7.8629 23 7 -2.5835 2.9121 -8.9488 24 14 -1.1100 1.1629 -7.3964 25 1 -1.6236 0.7424 -6.0681 26 1 0.3681 1.2941 -7.3368 27 1 -1.4754 0.1447 -8.4139 28 7 -0.4220 2.6183 -5.4928 29 1 -0.3634 -1.0201 0.1242 30 1 -0.3634 0.6176 0.8214 31 1 -0.3634 0.4027 -0.9455 32 1 1.3048 -1.4512 1.6169 33 1 2.3456 -0.0492 2.0232 34 1 3.4896 -2.4065 1.2802 35 1 4.1642 -0.8615 0.6630 36 1 4.6554 -1.2015 -1.6383 37 1 4.5950 -2.9505 -1.3134 38 1 3.6749 -2.2660 -2.6747 39 1 0.9267 0.5643 -4.7539 40 1 0.9059 3.3718 -2.5284 41 1 -0.0776 5.5821 -3.0804 42 1 -1.2851 5.8502 -5.2314 43 1 -2.9137 3.7798 -9.2301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890190835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:23 Heat of formation + Delta-G solvation = -29.653285 kcal Electronic energy + Delta-G solvation = -27046.049861 eV Core-core repulsion = 23284.303935 eV Total energy + Delta-G solvation = -3761.745926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20178 -39.68504 -38.18264 -37.75928 -34.81633 -33.55679 -32.88089 -31.88514 -31.19752 -29.74104 -28.56286 -25.93089 -25.08701 -24.22930 -22.75669 -21.88431 -21.46534 -20.56137 -19.37578 -18.34712 -17.64650 -17.13155 -16.55901 -16.36977 -15.73297 -15.14724 -15.10438 -14.46831 -14.24758 -14.04089 -13.70444 -13.57282 -13.48768 -13.30670 -13.13890 -12.93129 -12.61784 -12.27448 -12.23956 -12.01395 -11.94969 -11.73298 -11.50393 -11.16112 -11.05470 -11.00540 -10.79000 -10.53042 -10.38701 -10.02766 -9.68806 -9.26052 -9.10620 -8.89217 -8.63186 -7.84626 -7.54148 -7.29078 -4.84080 1.30522 2.20259 2.48504 2.57872 3.29971 3.41806 3.57621 3.65004 3.97524 4.19589 4.23891 4.37578 4.48880 4.54855 4.59223 4.86804 4.97417 5.08460 5.24924 5.32874 5.41143 5.45387 5.47063 5.53073 5.64553 5.73100 5.74830 5.88932 5.91786 5.95066 6.02101 6.20074 6.31129 6.33236 6.42329 6.44363 6.94671 7.02930 7.13569 7.34119 7.40668 7.48532 7.65354 7.72353 8.03186 8.09907 8.28676 8.57588 9.31178 9.95748 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.003847 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.808295 B = 7277.456114 C = 8131.839179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 H 0.094 0.906 4 C -0.130 4.130 5 C -0.130 4.130 6 C 0.133 3.867 7 H 0.081 0.919 8 C -0.171 4.171 9 N -0.587 5.587 10 C 0.529 3.471 11 O -0.514 6.514 12 C 0.507 3.493 13 O -0.485 6.485 14 N -0.624 5.624 15 C 0.384 3.616 16 C -0.310 4.310 17 C -0.034 4.034 18 C -0.271 4.271 19 C 0.273 3.727 20 C -0.472 4.472 21 H 0.085 0.915 22 C 0.043 3.957 23 N -0.802 5.802 24 Si 1.156 2.844 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.331 1.331 28 N -0.596 5.596 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.418 0.582 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 -8.459 18.427 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.112 0.888 4 C -0.168 4.168 5 C -0.168 4.168 6 C 0.031 3.969 7 H 0.098 0.902 8 C -0.228 4.228 9 N -0.322 5.322 10 C 0.312 3.688 11 O -0.390 6.390 12 C 0.288 3.712 13 O -0.359 6.359 14 N -0.270 5.270 15 C 0.154 3.846 16 C -0.334 4.334 17 C -0.058 4.058 18 C -0.294 4.294 19 C 0.149 3.851 20 C -0.504 4.504 21 H 0.103 0.897 22 C -0.179 4.179 23 N -0.423 5.423 24 Si 0.992 3.008 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.265 1.265 28 N -0.321 5.321 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.255 0.745 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.809 -10.417 17.428 22.549 hybrid contribution -0.132 2.306 0.572 2.379 sum 9.677 -8.112 18.000 21.988 Atomic orbital electron populations 1.22286 0.94099 1.01427 1.04250 1.21818 0.95185 0.96915 0.83330 0.88789 1.22781 0.97626 0.99685 0.96731 1.22886 0.98235 1.01160 0.94518 1.22014 0.92618 0.88334 0.93913 0.90155 1.22200 0.96630 1.01891 1.02080 1.48418 1.50847 1.28238 1.04696 1.19666 0.80765 0.86252 0.82167 1.90719 1.50896 1.52399 1.44969 1.19900 0.80699 0.87519 0.83084 1.90666 1.50900 1.49089 1.45243 1.42932 1.58356 1.16470 1.09207 1.17999 0.91771 0.83227 0.91644 1.21469 1.14961 0.92942 1.04068 1.20911 0.94101 0.95695 0.95103 1.21626 1.10664 0.99758 0.97316 1.18248 0.88470 0.85465 0.92912 1.20764 1.30041 0.98135 1.01426 0.89678 1.27794 0.91511 1.06890 0.91663 1.70662 1.21707 1.29273 1.20683 0.81766 0.76152 0.70108 0.72800 1.21671 1.21841 1.26505 1.65769 1.20561 1.26375 1.19421 0.93052 0.91262 0.90803 0.90315 0.89771 0.89645 0.90288 0.92476 0.91645 0.89336 0.74473 0.84330 0.87407 0.87488 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.74 37.16 0.32 -1.51 16 2 C 0.13 1.37 2.81 -66.96 -0.19 1.18 16 3 H 0.09 1.09 7.16 -51.93 -0.37 0.72 16 4 C -0.13 -0.91 6.47 -24.90 -0.16 -1.07 16 5 C -0.13 -0.87 6.50 -24.58 -0.16 -1.03 16 6 C 0.13 1.27 3.74 -66.42 -0.25 1.02 16 7 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 8 C -0.17 -1.67 8.83 37.16 0.33 -1.34 16 9 N -0.59 -7.17 2.98 -156.14 -0.47 -7.63 16 10 C 0.53 8.14 7.40 -11.62 -0.09 8.05 16 11 O -0.51 -8.66 14.32 5.50 0.08 -8.58 16 12 C 0.51 8.85 6.91 -11.63 -0.08 8.77 16 13 O -0.48 -8.55 9.01 5.48 0.05 -8.50 16 14 N -0.62 -12.43 5.39 -11.83 -0.06 -12.49 16 15 C 0.38 8.84 7.51 -155.10 -1.16 7.68 16 16 C -0.31 -6.72 8.83 -38.88 -0.34 -7.06 16 17 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 18 C -0.27 -6.33 9.83 -38.65 -0.38 -6.71 16 19 C 0.27 7.13 6.43 -85.00 -0.55 6.58 16 20 C -0.47 -12.80 9.57 -37.73 -0.36 -13.16 16 21 H 0.09 2.28 8.05 -52.49 -0.42 1.86 16 22 C 0.04 1.18 5.52 -17.34 -0.10 1.08 16 23 N -0.80 -21.87 13.65 55.55 0.76 -21.11 16 24 Si 1.16 28.79 25.47 -169.99 -4.33 24.46 16 25 H -0.29 -7.22 6.84 56.52 0.39 -6.83 16 26 H -0.29 -7.11 7.03 56.52 0.40 -6.72 16 27 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 28 N -0.60 -15.23 4.54 -10.28 -0.05 -15.28 16 29 H 0.05 0.52 8.00 -51.93 -0.42 0.11 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.07 5.21 -51.93 -0.27 0.80 16 32 H 0.08 0.49 7.76 -51.93 -0.40 0.09 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.10 5.86 -51.93 -0.30 0.80 16 39 H 0.42 8.06 8.33 -40.82 -0.34 7.72 16 40 H 0.14 2.84 5.32 -52.51 -0.28 2.56 16 41 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.11 2.32 8.06 -52.48 -0.42 1.89 16 43 H 0.28 7.36 8.72 -40.82 -0.36 7.00 16 LS Contribution 342.98 15.07 5.17 5.17 Total: -1.00 -29.77 342.98 -8.19 -37.96 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.78 Total: 4.67 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -3.56 Total: 1.35 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.18 Total: -56.52 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.13 Total: -17.08 kcal Atomic # 14 Polarization: 28.79 SS G_CDS: -4.33 Total: 24.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.77 -8.19 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890190835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.302 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds