Wall clock time and date at job start Tue Mar 31 2020 12:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.99811 * 2 1 4 4 C 1.54315 * 109.77178 * 121.15259 * 2 1 3 5 5 C 1.55157 * 102.86529 * 141.88492 * 4 2 1 6 6 C 1.54917 * 101.57718 * 324.30267 * 5 4 2 7 7 H 1.09002 * 110.36267 * 278.17125 * 6 5 4 8 8 C 1.53001 * 110.45634 * 155.89449 * 6 5 4 9 9 N 1.47023 * 109.88046 * 238.89765 * 2 1 3 10 10 C 1.34780 * 125.64553 * 61.68502 * 9 2 1 11 11 O 1.21351 * 119.99517 * 185.81279 * 10 9 2 12 12 C 1.49364 * 120.00150 * 5.80670 * 10 9 2 13 13 O 1.21365 * 119.99781 * 5.83459 * 12 10 9 14 14 N 1.34777 * 120.00189 * 185.82890 * 12 10 9 15 15 C 1.39106 * 120.00164 * 185.62637 * 14 12 10 16 16 C 1.39706 * 119.57923 * 18.67541 * 15 14 12 17 17 C 1.38653 * 119.49347 * 180.02562 * 16 15 14 18 18 C 1.38345 * 118.67096 * 359.72579 * 17 16 15 19 19 C 1.40593 * 119.13720 * 0.55543 * 18 17 16 20 20 C 1.41330 * 119.78785 * 179.70620 * 19 18 17 21 21 H 1.07998 * 120.00120 * 4.94432 * 20 19 18 22 22 C 1.40031 * 119.99947 * 184.94590 * 20 19 18 23 23 N 1.30746 * 120.00211 * 175.04410 * 22 20 19 24 24 Si 1.86799 * 120.00143 * 355.04070 * 22 20 19 25 25 H 1.48500 * 109.47021 * 60.00424 * 24 22 20 26 26 H 1.48504 * 109.47066 * 300.00425 * 24 22 20 27 27 H 1.48504 * 109.47269 * 180.02562 * 24 22 20 28 28 N 1.31934 * 119.57971 * 198.69822 * 15 14 12 29 29 H 1.09001 * 109.47385 * 186.93990 * 1 2 3 30 30 H 1.09003 * 109.47327 * 306.93984 * 1 2 3 31 31 H 1.09000 * 109.47217 * 66.93086 * 1 2 3 32 32 H 1.09004 * 110.92649 * 23.46713 * 4 2 1 33 33 H 1.09002 * 110.74438 * 260.21531 * 4 2 1 34 34 H 1.08997 * 111.00761 * 206.23176 * 5 4 2 35 35 H 1.09003 * 111.03838 * 82.38811 * 5 4 2 36 36 H 1.08998 * 109.47514 * 304.53355 * 8 6 5 37 37 H 1.08999 * 109.47104 * 64.53547 * 8 6 5 38 38 H 1.09003 * 109.46713 * 184.53181 * 8 6 5 39 39 H 0.97000 * 119.99715 * 5.62404 * 14 12 10 40 40 H 1.07999 * 120.25684 * 0.02562 * 16 15 14 41 41 H 1.08000 * 120.66602 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.43492 * 180.26049 * 18 17 16 43 43 H 0.97007 * 119.99560 * 5.00960 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0520 -0.7512 1.2428 5 6 3.2888 -1.5102 0.6935 6 6 2.8190 -1.8764 -0.7366 7 1 2.1969 -2.7712 -0.7140 8 6 4.0226 -2.0888 -1.6569 9 7 2.0300 -0.7142 -1.1839 10 6 1.8085 -0.3614 -2.4657 11 8 2.1814 -1.0836 -3.3668 12 6 1.1040 0.9183 -2.7770 13 8 0.8252 1.6905 -1.8832 14 7 0.7780 1.2155 -4.0506 15 6 0.2284 2.4563 -4.3564 16 6 0.3716 3.5149 -3.4560 17 6 -0.1774 4.7507 -3.7624 18 6 -0.8501 4.8991 -4.9621 19 6 -0.9655 3.7939 -5.8235 20 6 -1.6552 3.9285 -7.0497 21 1 -2.0221 4.8958 -7.3596 22 6 -1.8628 2.8075 -7.8629 23 7 -2.5835 2.9121 -8.9488 24 14 -1.1100 1.1629 -7.3964 25 1 -1.6236 0.7424 -6.0681 26 1 0.3681 1.2941 -7.3368 27 1 -1.4754 0.1447 -8.4139 28 7 -0.4220 2.6183 -5.4928 29 1 -0.3634 -1.0201 0.1242 30 1 -0.3634 0.6176 0.8214 31 1 -0.3634 0.4027 -0.9455 32 1 1.3048 -1.4512 1.6169 33 1 2.3456 -0.0492 2.0232 34 1 3.4896 -2.4065 1.2802 35 1 4.1642 -0.8615 0.6630 36 1 4.6554 -1.2015 -1.6383 37 1 4.5950 -2.9505 -1.3134 38 1 3.6749 -2.2660 -2.6747 39 1 0.9267 0.5643 -4.7539 40 1 0.9059 3.3718 -2.5284 41 1 -0.0776 5.5821 -3.0804 42 1 -1.2851 5.8502 -5.2314 43 1 -2.9137 3.7798 -9.2301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890190835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:22 Heat of formation + Delta-G solvation = -47.530153 kcal Electronic energy + Delta-G solvation = -27046.825060 eV Core-core repulsion = 23284.303935 eV Total energy + Delta-G solvation = -3762.521126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.47373 -41.07320 -39.72871 -38.89184 -36.46956 -35.44446 -33.70349 -33.07876 -32.73922 -31.54698 -29.37776 -27.63089 -26.61173 -24.94148 -24.10602 -23.67624 -22.40602 -21.85570 -20.86167 -20.14858 -18.93255 -18.41754 -17.77180 -17.55052 -17.13781 -16.94184 -16.43615 -16.06499 -15.62390 -15.35574 -15.02851 -14.83636 -14.76948 -14.40586 -14.27055 -14.19626 -14.00067 -13.79646 -13.73714 -13.12808 -13.05343 -12.85462 -12.69977 -12.45251 -12.31866 -12.20817 -11.96048 -11.70618 -11.61353 -11.59324 -11.54595 -11.15213 -10.57346 -10.43412 -9.89338 -9.81152 -9.39085 -9.27855 -6.86435 -0.08918 0.66021 0.79435 0.99422 1.53792 1.63768 1.94681 1.96867 2.22296 2.37921 2.61434 3.01172 3.49790 3.54845 3.66806 3.94923 3.99490 4.09233 4.27205 4.29076 4.34598 4.45611 4.55725 4.58247 4.65412 4.66150 4.73931 4.79303 4.90879 4.98004 5.11568 5.15441 5.18078 5.23259 5.26360 5.30867 5.35713 5.38714 5.48530 5.64098 5.65034 5.84156 6.01576 6.13490 6.31699 6.44587 6.61183 6.74579 7.41540 7.91882 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.003847 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.808295 B = 7277.456114 C = 8131.839179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 H 0.083 0.917 4 C -0.120 4.120 5 C -0.118 4.118 6 C 0.123 3.877 7 H 0.089 0.911 8 C -0.167 4.167 9 N -0.578 5.578 10 C 0.528 3.472 11 O -0.535 6.535 12 C 0.508 3.492 13 O -0.485 6.485 14 N -0.633 5.633 15 C 0.370 3.630 16 C -0.298 4.298 17 C -0.023 4.023 18 C -0.283 4.283 19 C 0.257 3.743 20 C -0.504 4.504 21 H 0.075 0.925 22 C 0.018 3.982 23 N -0.827 5.827 24 Si 1.185 2.815 25 H -0.295 1.295 26 H -0.290 1.290 27 H -0.330 1.330 28 N -0.615 5.615 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.418 0.582 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.120 0.880 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.569 -9.283 22.424 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 H 0.101 0.899 4 C -0.157 4.157 5 C -0.156 4.156 6 C 0.022 3.978 7 H 0.107 0.893 8 C -0.224 4.224 9 N -0.312 5.312 10 C 0.309 3.691 11 O -0.414 6.414 12 C 0.290 3.710 13 O -0.358 6.358 14 N -0.279 5.279 15 C 0.140 3.860 16 C -0.322 4.322 17 C -0.047 4.047 18 C -0.305 4.305 19 C 0.132 3.868 20 C -0.537 4.537 21 H 0.093 0.907 22 C -0.199 4.199 23 N -0.450 5.450 24 Si 1.020 2.980 25 H -0.224 1.224 26 H -0.218 1.218 27 H -0.264 1.264 28 N -0.342 5.342 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.256 0.744 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.138 0.862 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.509 -11.254 21.491 26.851 hybrid contribution -0.543 2.580 -0.371 2.662 sum 10.966 -8.674 21.120 25.329 Atomic orbital electron populations 1.22241 0.94701 1.02081 1.02715 1.22035 0.94719 0.97020 0.84282 0.89887 1.22783 0.97890 0.99952 0.95115 1.22900 0.97959 1.02418 0.92328 1.22376 0.92285 0.87565 0.95601 0.89283 1.22144 0.96922 1.02755 1.00602 1.48612 1.49857 1.28800 1.03916 1.19251 0.81043 0.85402 0.83356 1.90725 1.52053 1.52688 1.45889 1.20383 0.80090 0.88404 0.82090 1.90633 1.50641 1.49534 1.45009 1.43024 1.58885 1.15688 1.10306 1.18362 0.91548 0.84842 0.91279 1.21856 1.13640 0.92742 1.03986 1.21370 0.92018 0.96669 0.94660 1.21823 1.11244 0.99562 0.97833 1.18462 0.88472 0.86670 0.93151 1.20753 1.32299 0.97846 1.02773 0.90668 1.28337 0.91563 1.08313 0.91712 1.70667 1.23426 1.29354 1.21541 0.81342 0.75711 0.68762 0.72143 1.22375 1.21811 1.26395 1.65674 1.21172 1.26536 1.20773 0.92010 0.89885 0.94447 0.88915 0.87791 0.86690 0.90024 0.93090 0.88960 0.92346 0.74432 0.82691 0.83030 0.86157 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.74 71.98 0.63 -2.64 16 2 C 0.12 2.23 2.81 45.34 0.13 2.36 16 3 H 0.08 1.73 7.16 -2.39 -0.02 1.71 16 4 C -0.12 -1.14 6.47 31.78 0.21 -0.94 16 5 C -0.12 -1.05 6.50 31.99 0.21 -0.84 16 6 C 0.12 1.98 3.74 45.47 0.17 2.15 16 7 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 8 C -0.17 -2.94 8.83 71.98 0.64 -2.31 16 9 N -0.58 -13.05 2.98 -766.26 -2.29 -15.34 16 10 C 0.53 15.93 7.40 87.24 0.65 16.57 16 11 O -0.54 -18.09 14.32 -3.25 -0.05 -18.13 16 12 C 0.51 17.45 6.91 87.24 0.60 18.05 16 13 O -0.48 -16.46 9.01 -3.29 -0.03 -16.49 16 14 N -0.63 -25.18 5.39 -309.71 -1.67 -26.85 16 15 C 0.37 16.85 7.51 133.31 1.00 17.85 16 16 C -0.30 -12.33 8.83 22.72 0.20 -12.13 16 17 C -0.02 -0.92 10.15 22.39 0.23 -0.69 16 18 C -0.28 -12.89 9.83 22.87 0.22 -12.66 16 19 C 0.26 13.58 6.43 40.20 0.26 13.84 16 20 C -0.50 -28.22 9.57 23.47 0.22 -28.00 16 21 H 0.08 4.21 8.05 -2.91 -0.02 4.19 16 22 C 0.02 1.03 5.52 85.29 0.47 1.50 16 23 N -0.83 -46.63 13.65 21.84 0.30 -46.33 16 24 Si 1.19 60.10 25.47 68.60 1.75 61.85 16 25 H -0.29 -15.05 6.84 99.48 0.68 -14.37 16 26 H -0.29 -14.43 7.03 99.48 0.70 -13.73 16 27 H -0.33 -16.40 7.11 99.48 0.71 -15.69 16 28 N -0.62 -31.69 4.54 -186.44 -0.85 -32.53 16 29 H 0.06 1.12 8.00 -2.39 -0.02 1.10 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.04 5.21 -2.39 -0.01 1.03 16 32 H 0.09 0.69 7.76 -2.39 -0.02 0.67 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 0.73 8.05 -2.39 -0.02 0.72 16 36 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.42 5.86 -2.39 -0.01 1.41 16 39 H 0.42 16.41 8.33 -92.71 -0.77 15.64 16 40 H 0.16 5.93 5.32 -3.35 -0.02 5.91 16 41 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 43 H 0.28 15.33 8.72 -92.70 -0.81 14.52 16 Total: -1.00 -66.30 342.98 3.20 -63.10 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.20 Total: 18.62 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 5.83 Total: 12.11 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -4.50 Total: -121.05 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.08 Total: -34.62 kcal Atomic # 14 Polarization: 60.10 SS G_CDS: 1.75 Total: 61.85 kcal Total: -66.30 3.20 -63.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890190835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.570 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds