Wall clock time and date at job start Tue Mar 31 2020 12:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47007 * 2 1 4 4 O 1.21278 * 119.99932 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99566 * 180.02562 * 3 2 1 6 6 C 1.47017 * 125.65294 * 359.96063 * 5 3 2 7 7 C 1.54318 * 107.27504 * 178.97775 * 6 5 3 8 8 C 1.55163 * 102.94090 * 337.80245 * 7 6 5 9 9 H 1.08995 * 111.00728 * 277.43158 * 8 7 6 10 10 C 1.50700 * 111.00114 * 153.57547 * 8 7 6 11 11 O 1.21273 * 119.99319 * 194.53339 * 10 8 7 12 12 N 1.34766 * 120.00468 * 14.53762 * 10 8 7 13 13 C 1.37208 * 120.00538 * 180.32745 * 12 10 8 14 14 H 1.08001 * 120.00008 * 301.54131 * 13 12 10 15 15 C 1.38890 * 120.00204 * 121.53336 * 13 12 10 16 16 N 1.31413 * 120.00274 * 158.95931 * 15 13 12 17 17 Si 1.86806 * 119.99882 * 338.95606 * 15 13 12 18 18 H 1.48497 * 109.47400 * 90.00022 * 17 15 13 19 19 H 1.48506 * 109.47016 * 210.00178 * 17 15 13 20 20 H 1.48497 * 109.47023 * 329.99926 * 17 15 13 21 21 C 1.39427 * 119.99839 * 0.32906 * 12 10 8 22 22 C 1.39070 * 119.69954 * 68.55051 * 21 12 10 23 23 C 1.38384 * 119.10280 * 179.72862 * 22 21 12 24 24 C 1.38826 * 118.48829 * 0.53621 * 23 22 21 25 25 C 1.38150 * 119.31241 * 359.72731 * 24 23 22 26 26 N 1.31879 * 120.85223 * 359.97438 * 25 24 23 27 27 C 1.47428 * 125.64598 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46764 * 300.00270 * 1 2 3 30 30 H 1.08998 * 109.47265 * 59.99530 * 1 2 3 31 31 H 1.09004 * 109.46843 * 240.00263 * 2 1 3 32 32 H 1.08992 * 109.47413 * 120.00064 * 2 1 3 33 33 H 1.08998 * 109.88136 * 59.55228 * 6 5 3 34 34 H 1.09007 * 110.00983 * 298.46785 * 6 5 3 35 35 H 1.09006 * 110.72085 * 219.44697 * 7 6 5 36 36 H 1.08991 * 110.72267 * 96.16656 * 7 6 5 37 37 H 0.97006 * 119.99971 * 184.89616 * 16 15 13 38 38 H 1.08005 * 120.44717 * 359.97438 * 22 21 12 39 39 H 1.07993 * 120.75146 * 180.26110 * 23 22 21 40 40 H 1.07994 * 120.34490 * 179.70691 * 24 23 22 41 41 H 1.07999 * 119.57137 * 180.02562 * 25 24 23 42 42 H 1.09005 * 110.36187 * 85.25537 * 27 5 3 43 43 H 1.08999 * 110.36811 * 322.93337 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4181 0.6491 -0.0003 7 6 5.7689 1.3948 -0.0274 8 6 5.3891 2.7807 -0.6126 9 1 5.3402 2.7453 -1.7008 10 6 6.3523 3.8441 -0.1515 11 8 6.0714 5.0161 -0.2862 12 7 7.5257 3.4926 0.4104 13 6 8.3998 4.4607 0.8363 14 1 8.7771 5.1927 0.1376 15 6 8.7992 4.4994 2.1660 16 7 9.9077 5.1204 2.5013 17 14 7.7605 3.6688 3.4778 18 1 8.2050 2.2617 3.6438 19 1 7.9171 4.3925 4.7650 20 1 6.3335 3.6919 3.0674 21 6 7.8516 2.1451 0.5589 22 6 8.1152 1.3719 -0.5666 23 6 8.4430 0.0372 -0.4045 24 6 8.4849 -0.4829 0.8820 25 6 8.2061 0.3421 1.9544 26 7 7.9025 1.6121 1.7697 27 6 3.9833 3.0019 -0.0011 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.3257 0.0172 -0.8836 34 1 4.3495 0.0391 0.9005 35 1 6.4789 0.8833 -0.6774 36 1 6.1723 1.4989 0.9798 37 1 10.2240 5.0874 3.4178 38 1 8.0687 1.8081 -1.5535 39 1 8.6568 -0.5866 -1.2597 40 1 8.7327 -1.5217 1.0427 41 1 8.2379 -0.0580 2.9571 42 1 4.0681 3.3815 1.0172 43 1 3.4059 3.6914 -0.6170 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:47 Heat of formation + Delta-G solvation = 39.287280 kcal Electronic energy + Delta-G solvation = -28031.840273 eV Core-core repulsion = 24273.083834 eV Total energy + Delta-G solvation = -3758.756439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57573 -39.81378 -38.51050 -36.96772 -35.00757 -33.08151 -32.70484 -32.29146 -31.26237 -29.89728 -28.90253 -26.08133 -24.57975 -23.42016 -23.21786 -22.61449 -21.63861 -19.51682 -19.15430 -18.43448 -17.29946 -16.71071 -16.36999 -16.11728 -15.68889 -15.52511 -15.14904 -14.91219 -14.41993 -14.19063 -14.08005 -13.70384 -13.41280 -13.18799 -13.14556 -12.75364 -12.47977 -12.42637 -12.36137 -12.16633 -11.85822 -11.75234 -11.51647 -11.36025 -11.26230 -10.92203 -10.80815 -10.72504 -10.11605 -9.86730 -9.41514 -9.11966 -8.88399 -8.67645 -8.60974 -8.20811 -7.58556 -6.35260 -4.28143 1.33096 1.47237 2.62398 2.90000 3.26329 3.52984 3.56128 3.61412 3.89591 3.99201 4.31811 4.44733 4.49471 4.72111 4.82221 4.88397 4.90324 4.91813 5.01255 5.04663 5.20864 5.27381 5.28926 5.31435 5.35513 5.44692 5.52718 5.59340 5.74720 5.77753 5.82636 5.92229 5.94222 6.01604 6.03577 6.15736 6.23700 6.28453 6.35577 6.82159 7.50715 7.57349 8.11612 8.15178 8.23403 8.39749 8.80178 9.21377 9.47829 10.69070 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.005274 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.828035 B = 5307.716065 C = 5992.845365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.542 6.542 5 N -0.619 5.619 6 C 0.102 3.898 7 C -0.187 4.187 8 C -0.120 4.120 9 H 0.109 0.891 10 C 0.500 3.500 11 O -0.527 6.527 12 N -0.427 5.427 13 C -0.348 4.348 14 H 0.102 0.898 15 C 0.080 3.920 16 N -0.860 5.860 17 Si 0.924 3.076 18 H -0.240 1.240 19 H -0.319 1.319 20 H -0.282 1.282 21 C 0.388 3.612 22 C -0.171 4.171 23 C -0.078 4.078 24 C -0.194 4.194 25 C 0.113 3.887 26 N -0.496 5.496 27 C 0.129 3.871 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.275 0.725 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.151 0.849 42 H 0.072 0.928 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 -19.027 -5.193 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 C 0.313 3.687 4 O -0.420 6.420 5 N -0.354 5.354 6 C -0.021 4.021 7 C -0.224 4.224 8 C -0.143 4.143 9 H 0.127 0.873 10 C 0.287 3.713 11 O -0.403 6.403 12 N -0.148 5.148 13 C -0.473 4.473 14 H 0.119 0.881 15 C -0.130 4.130 16 N -0.493 5.493 17 Si 0.755 3.245 18 H -0.166 1.166 19 H -0.250 1.250 20 H -0.208 1.208 21 C 0.163 3.837 22 C -0.193 4.193 23 C -0.104 4.104 24 C -0.214 4.214 25 C -0.044 4.044 26 N -0.211 5.211 27 C 0.006 3.994 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.091 0.909 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.210 -17.222 -4.424 19.585 hybrid contribution 0.071 -0.866 0.085 0.873 sum -8.139 -18.088 -4.339 20.304 Atomic orbital electron populations 1.21534 0.93042 1.01423 1.03415 1.21602 0.98433 0.93635 1.04171 1.20469 0.80315 0.91925 0.75998 1.90707 1.54330 1.46781 1.50136 1.48624 1.05204 1.08293 1.73268 1.22192 0.87077 0.91397 1.01445 1.25099 0.97142 0.95647 1.04469 1.22537 0.95212 0.94545 1.01995 0.87305 1.20378 0.80907 0.89124 0.80867 1.90617 1.74525 1.19180 1.55956 1.41255 1.15834 1.01413 1.56344 1.18751 1.22744 1.10922 0.94891 0.88076 1.25685 0.94768 0.94338 0.98241 1.69749 1.18785 1.40650 1.20096 0.86019 0.80743 0.79401 0.78333 1.16562 1.24981 1.20750 1.18832 0.89370 0.87025 0.88430 1.21898 1.02323 0.94979 1.00137 1.21366 0.97029 0.94366 0.97648 1.21891 1.04895 1.01185 0.93403 1.22416 0.94490 0.88149 0.99342 1.67858 1.15842 1.13261 1.24129 1.21939 0.91092 0.84563 1.01778 0.92132 0.91978 0.91981 0.89045 0.89066 0.91261 0.91397 0.86309 0.87269 0.91530 0.84606 0.84874 0.85134 0.83199 0.90935 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.20 37.16 0.34 -0.94 16 2 C -0.14 -1.33 5.61 -27.88 -0.16 -1.48 16 3 C 0.52 7.60 7.85 -10.98 -0.09 7.51 16 4 O -0.54 -10.01 16.24 5.56 0.09 -9.92 16 5 N -0.62 -8.98 3.33 -170.53 -0.57 -9.55 16 6 C 0.10 1.17 6.49 -3.07 -0.02 1.15 16 7 C -0.19 -2.63 3.99 -24.90 -0.10 -2.73 16 8 C -0.12 -2.03 3.32 -89.63 -0.30 -2.33 16 9 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 10 C 0.50 11.34 6.96 -10.99 -0.08 11.26 16 11 O -0.53 -14.02 16.87 5.56 0.09 -13.93 16 12 N -0.43 -10.11 1.88 -60.71 -0.11 -10.23 16 13 C -0.35 -9.87 8.99 -14.90 -0.13 -10.01 16 14 H 0.10 3.14 8.06 -52.49 -0.42 2.72 16 15 C 0.08 2.28 5.36 -17.49 -0.09 2.18 16 16 N -0.86 -25.42 13.95 55.49 0.77 -24.65 16 17 Si 0.92 23.36 25.19 -169.99 -4.28 19.08 16 18 H -0.24 -5.44 5.35 56.52 0.30 -5.14 16 19 H -0.32 -8.27 7.11 56.52 0.40 -7.87 16 20 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 21 C 0.39 7.55 3.15 -154.64 -0.49 7.06 16 22 C -0.17 -2.52 6.31 -39.22 -0.25 -2.77 16 23 C -0.08 -0.87 9.24 -39.31 -0.36 -1.23 16 24 C -0.19 -2.15 10.11 -39.40 -0.40 -2.54 16 25 C 0.11 1.65 10.45 -17.56 -0.18 1.46 16 26 N -0.50 -9.61 3.53 -12.34 -0.04 -9.65 16 27 C 0.13 2.25 6.22 -2.54 -0.02 2.24 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.66 8.10 -51.93 -0.42 0.23 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.12 1.44 3.66 -70.43 -0.26 1.18 16 36 H 0.11 1.86 4.12 -51.93 -0.21 1.64 16 37 H 0.27 7.59 8.32 -40.82 -0.34 7.25 16 38 H 0.14 1.83 8.06 -52.48 -0.42 1.40 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 43 H 0.09 1.58 8.04 -51.93 -0.42 1.16 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -36.07 341.32 -7.25 -43.32 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.03 Total: 1.54 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -2.32 Total: 8.84 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.05 Total: -54.07 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.18 Total: -23.85 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.28 Total: 19.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.07 -7.25 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.607 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds