Wall clock time and date at job start Tue Mar 31 2020 12:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47007 * 2 1 4 4 O 1.21278 * 119.99932 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99566 * 180.02562 * 3 2 1 6 6 C 1.47017 * 125.65294 * 359.96063 * 5 3 2 7 7 C 1.54318 * 107.27504 * 178.97775 * 6 5 3 8 8 C 1.55163 * 102.94090 * 337.80245 * 7 6 5 9 9 H 1.08995 * 111.00728 * 277.43158 * 8 7 6 10 10 C 1.50700 * 111.00114 * 153.57547 * 8 7 6 11 11 O 1.21273 * 119.99319 * 194.53339 * 10 8 7 12 12 N 1.34766 * 120.00468 * 14.53762 * 10 8 7 13 13 C 1.37208 * 120.00538 * 180.32745 * 12 10 8 14 14 H 1.08001 * 120.00008 * 301.54131 * 13 12 10 15 15 C 1.38890 * 120.00204 * 121.53336 * 13 12 10 16 16 N 1.31413 * 120.00274 * 158.95931 * 15 13 12 17 17 Si 1.86806 * 119.99882 * 338.95606 * 15 13 12 18 18 H 1.48497 * 109.47400 * 90.00022 * 17 15 13 19 19 H 1.48506 * 109.47016 * 210.00178 * 17 15 13 20 20 H 1.48497 * 109.47023 * 329.99926 * 17 15 13 21 21 C 1.39427 * 119.99839 * 0.32906 * 12 10 8 22 22 C 1.39070 * 119.69954 * 68.55051 * 21 12 10 23 23 C 1.38384 * 119.10280 * 179.72862 * 22 21 12 24 24 C 1.38826 * 118.48829 * 0.53621 * 23 22 21 25 25 C 1.38150 * 119.31241 * 359.72731 * 24 23 22 26 26 N 1.31879 * 120.85223 * 359.97438 * 25 24 23 27 27 C 1.47428 * 125.64598 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46764 * 300.00270 * 1 2 3 30 30 H 1.08998 * 109.47265 * 59.99530 * 1 2 3 31 31 H 1.09004 * 109.46843 * 240.00263 * 2 1 3 32 32 H 1.08992 * 109.47413 * 120.00064 * 2 1 3 33 33 H 1.08998 * 109.88136 * 59.55228 * 6 5 3 34 34 H 1.09007 * 110.00983 * 298.46785 * 6 5 3 35 35 H 1.09006 * 110.72085 * 219.44697 * 7 6 5 36 36 H 1.08991 * 110.72267 * 96.16656 * 7 6 5 37 37 H 0.97006 * 119.99971 * 184.89616 * 16 15 13 38 38 H 1.08005 * 120.44717 * 359.97438 * 22 21 12 39 39 H 1.07993 * 120.75146 * 180.26110 * 23 22 21 40 40 H 1.07994 * 120.34490 * 179.70691 * 24 23 22 41 41 H 1.07999 * 119.57137 * 180.02562 * 25 24 23 42 42 H 1.09005 * 110.36187 * 85.25537 * 27 5 3 43 43 H 1.08999 * 110.36811 * 322.93337 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4181 0.6491 -0.0003 7 6 5.7689 1.3948 -0.0274 8 6 5.3891 2.7807 -0.6126 9 1 5.3402 2.7453 -1.7008 10 6 6.3523 3.8441 -0.1515 11 8 6.0714 5.0161 -0.2862 12 7 7.5257 3.4926 0.4104 13 6 8.3998 4.4607 0.8363 14 1 8.7771 5.1927 0.1376 15 6 8.7992 4.4994 2.1660 16 7 9.9077 5.1204 2.5013 17 14 7.7605 3.6688 3.4778 18 1 8.2050 2.2617 3.6438 19 1 7.9171 4.3925 4.7650 20 1 6.3335 3.6919 3.0674 21 6 7.8516 2.1451 0.5589 22 6 8.1152 1.3719 -0.5666 23 6 8.4430 0.0372 -0.4045 24 6 8.4849 -0.4829 0.8820 25 6 8.2061 0.3421 1.9544 26 7 7.9025 1.6121 1.7697 27 6 3.9833 3.0019 -0.0011 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.3257 0.0172 -0.8836 34 1 4.3495 0.0391 0.9005 35 1 6.4789 0.8833 -0.6774 36 1 6.1723 1.4989 0.9798 37 1 10.2240 5.0874 3.4178 38 1 8.0687 1.8081 -1.5535 39 1 8.6568 -0.5866 -1.2597 40 1 8.7327 -1.5217 1.0427 41 1 8.2379 -0.0580 2.9571 42 1 4.0681 3.3815 1.0172 43 1 3.4059 3.6914 -0.6170 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892471135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:46 Heat of formation + Delta-G solvation = 13.205853 kcal Electronic energy + Delta-G solvation = -28032.971248 eV Core-core repulsion = 24273.083834 eV Total energy + Delta-G solvation = -3759.887415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.89344 -40.95848 -40.05507 -38.27423 -36.75200 -34.54859 -33.89335 -33.62183 -32.57741 -31.15993 -30.05389 -27.70284 -25.97444 -24.58140 -24.38741 -23.67520 -22.93509 -21.11105 -20.23385 -20.16315 -18.45580 -18.09153 -17.76288 -17.31961 -16.98403 -16.83513 -16.66663 -16.09821 -15.78369 -15.64255 -15.40028 -15.03593 -14.75302 -14.51107 -14.38298 -14.28552 -14.09148 -13.66921 -13.55780 -13.14017 -13.08032 -12.88546 -12.66590 -12.57095 -12.50509 -12.32343 -12.20639 -12.10162 -11.96679 -11.22677 -11.01167 -10.81195 -10.37221 -10.26046 -9.79381 -9.54916 -9.14608 -8.55920 -6.49723 0.20618 0.45390 1.33542 1.47456 1.50240 1.54631 1.63295 1.89732 2.30033 2.41309 2.78046 2.91795 3.17868 3.31499 3.63773 3.72485 3.86067 4.01636 4.08979 4.18739 4.19532 4.20143 4.26140 4.30766 4.35987 4.45682 4.62403 4.67024 4.68569 4.75200 4.85949 4.91753 4.96916 5.01085 5.06738 5.12446 5.26383 5.35887 5.38864 5.52007 5.87074 5.94581 6.43509 6.49003 6.75283 6.94036 7.06014 7.30625 7.59084 8.53725 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.005274 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.828035 B = 5307.716065 C = 5992.845365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.513 3.487 4 O -0.596 6.596 5 N -0.618 5.618 6 C 0.103 3.897 7 C -0.177 4.177 8 C -0.106 4.106 9 H 0.137 0.863 10 C 0.488 3.512 11 O -0.590 6.590 12 N -0.436 5.436 13 C -0.354 4.354 14 H 0.050 0.950 15 C 0.040 3.960 16 N -0.904 5.904 17 Si 0.983 3.017 18 H -0.191 1.191 19 H -0.335 1.335 20 H -0.310 1.310 21 C 0.343 3.657 22 C -0.171 4.171 23 C -0.056 4.056 24 C -0.159 4.159 25 C 0.096 3.904 26 N -0.544 5.544 27 C 0.131 3.869 28 H 0.093 0.907 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.279 0.721 38 H 0.143 0.857 39 H 0.186 0.814 40 H 0.182 0.818 41 H 0.172 0.828 42 H 0.032 0.968 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 -26.291 -6.187 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.305 3.695 4 O -0.476 6.476 5 N -0.352 5.352 6 C -0.018 4.018 7 C -0.213 4.213 8 C -0.128 4.128 9 H 0.155 0.845 10 C 0.278 3.722 11 O -0.470 6.470 12 N -0.157 5.157 13 C -0.481 4.481 14 H 0.068 0.932 15 C -0.166 4.166 16 N -0.539 5.539 17 Si 0.814 3.186 18 H -0.114 1.114 19 H -0.268 1.268 20 H -0.238 1.238 21 C 0.121 3.879 22 C -0.192 4.192 23 C -0.081 4.081 24 C -0.178 4.178 25 C -0.061 4.061 26 N -0.259 5.259 27 C 0.007 3.993 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.164 0.836 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.161 0.839 39 H 0.204 0.796 40 H 0.199 0.801 41 H 0.189 0.811 42 H 0.051 0.949 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.217 -24.583 -5.429 26.483 hybrid contribution 0.101 1.328 0.314 1.369 sum -8.116 -23.255 -5.115 25.156 Atomic orbital electron populations 1.21562 0.93308 1.02948 1.01683 1.21700 0.98058 0.89814 1.06964 1.21616 0.79620 0.93752 0.74479 1.90687 1.55615 1.48919 1.52429 1.48740 1.06119 1.07331 1.72970 1.22475 0.84079 0.90479 1.04761 1.25005 0.99321 0.93619 1.03399 1.22380 0.92605 0.94503 1.03347 0.84526 1.21389 0.81477 0.89772 0.79596 1.90563 1.75861 1.22159 1.58442 1.41259 1.15399 1.03224 1.55784 1.18421 1.23258 1.12087 0.94322 0.93219 1.26310 0.95414 0.95140 0.99727 1.69826 1.20481 1.42876 1.20695 0.85195 0.77367 0.80987 0.75083 1.11388 1.26759 1.23832 1.18662 0.93815 0.85080 0.90370 1.21968 1.02087 0.96432 0.98756 1.21931 0.93975 0.92603 0.99613 1.22418 1.00570 1.02790 0.92017 1.22966 0.94451 0.86834 1.01802 1.67380 1.17602 1.16097 1.24835 1.21607 0.91911 0.86652 0.99129 0.88805 0.94098 0.93522 0.85486 0.86473 0.86570 0.89203 0.83579 0.89749 0.91164 0.83886 0.79641 0.80071 0.81114 0.94945 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.20 71.98 0.66 -1.54 16 2 C -0.13 -1.86 5.61 29.85 0.17 -1.69 16 3 C 0.51 14.06 7.85 87.66 0.69 14.74 16 4 O -0.60 -22.50 16.24 -3.02 -0.05 -22.55 16 5 N -0.62 -16.76 3.33 -811.83 -2.70 -19.46 16 6 C 0.10 1.85 6.49 86.73 0.56 2.41 16 7 C -0.18 -4.41 3.99 31.78 0.13 -4.28 16 8 C -0.11 -3.59 3.32 -10.15 -0.03 -3.62 16 9 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 10 C 0.49 23.58 6.96 87.66 0.61 24.19 16 11 O -0.59 -34.46 16.87 -3.01 -0.05 -34.51 16 12 N -0.44 -21.66 1.88 -464.39 -0.87 -22.54 16 13 C -0.35 -21.66 8.99 84.01 0.76 -20.90 16 14 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 15 C 0.04 2.39 5.36 84.91 0.46 2.84 16 16 N -0.90 -56.49 13.95 21.65 0.30 -56.19 16 17 Si 0.98 50.70 25.19 68.60 1.73 52.42 16 18 H -0.19 -8.27 5.35 99.48 0.53 -7.73 16 19 H -0.33 -17.70 7.11 99.48 0.71 -16.99 16 20 H -0.31 -17.28 7.11 99.48 0.71 -16.57 16 21 C 0.34 12.99 3.15 132.90 0.42 13.40 16 22 C -0.17 -4.38 6.31 22.50 0.14 -4.24 16 23 C -0.06 -0.83 9.24 22.45 0.21 -0.62 16 24 C -0.16 -2.29 10.11 22.39 0.23 -2.06 16 25 C 0.10 2.31 10.45 84.66 0.88 3.19 16 26 N -0.54 -19.86 3.53 -192.95 -0.68 -20.54 16 27 C 0.13 4.79 6.22 86.85 0.54 5.33 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.82 8.10 -2.38 -0.02 0.80 16 30 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.15 2.74 3.66 -19.77 -0.07 2.66 16 36 H 0.08 2.68 4.12 -2.39 -0.01 2.67 16 37 H 0.28 16.17 8.32 -92.70 -0.77 15.40 16 38 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 40 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.03 1.41 8.03 -2.38 -0.02 1.39 16 43 H 0.07 2.72 8.04 -2.39 -0.02 2.70 16 Total: -1.00 -94.77 341.32 4.87 -89.90 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.78 Total: 6.31 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 6.41 Total: 27.15 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -3.95 Total: -118.73 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.10 Total: -57.05 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.73 Total: 52.42 kcal Total: -94.77 4.87 -89.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.110 kcal (2) G-P(sol) polarization free energy of solvation -94.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds