Wall clock time and date at job start Tue Mar 31 2020 11:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47180 * 2 1 4 4 H 1.09004 * 109.46477 * 306.24426 * 3 2 1 5 5 C 1.50697 * 109.47318 * 186.24855 * 3 2 1 6 6 O 1.21268 * 119.99712 * 255.91318 * 5 3 2 7 7 N 1.34767 * 120.00354 * 75.90597 * 5 3 2 8 8 C 1.37218 * 120.00343 * 4.83083 * 7 5 3 9 9 H 1.07999 * 119.99505 * 27.85651 * 8 7 5 10 10 C 1.38892 * 120.00217 * 207.86452 * 8 7 5 11 11 N 1.31403 * 120.00074 * 8.56433 * 10 8 7 12 12 Si 1.86799 * 119.99608 * 188.57228 * 10 8 7 13 13 H 1.48492 * 109.47568 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47067 * 119.99856 * 12 10 8 15 15 H 1.48501 * 109.46937 * 239.99389 * 12 10 8 16 16 C 1.39430 * 120.00307 * 184.82367 * 7 5 3 17 17 C 1.39059 * 119.70296 * 264.37423 * 16 7 5 18 18 C 1.38377 * 119.10722 * 179.97438 * 17 16 7 19 19 C 1.38836 * 118.48475 * 0.02562 * 18 17 16 20 20 C 1.38147 * 119.31397 * 0.02562 * 19 18 17 21 21 N 1.31886 * 120.84745 * 359.74096 * 20 19 18 22 22 N 1.46491 * 109.47081 * 66.24342 * 3 2 1 23 23 C 1.46769 * 124.34918 * 240.00294 * 22 3 2 24 24 C 1.54479 * 105.47389 * 197.03825 * 23 22 3 25 25 C 1.54629 * 101.76503 * 334.58443 * 24 23 22 26 26 C 1.34422 * 124.35197 * 60.02448 * 22 3 2 27 27 O 1.21277 * 124.93591 * 359.30935 * 26 22 3 28 28 H 1.08999 * 109.46851 * 300.00076 * 1 2 3 29 29 H 1.09000 * 109.46808 * 60.00367 * 1 2 3 30 30 H 1.09000 * 109.46819 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47330 * 240.00143 * 2 1 3 32 32 H 1.08999 * 109.47489 * 119.99937 * 2 1 3 33 33 H 0.97007 * 120.00558 * 180.02562 * 11 10 8 34 34 H 1.08007 * 120.44802 * 359.95637 * 17 16 7 35 35 H 1.07991 * 120.76148 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.34117 * 180.02562 * 19 18 17 37 37 H 1.07996 * 119.57172 * 180.02562 * 20 19 18 38 38 H 1.08998 * 110.24281 * 316.03651 * 23 22 3 39 39 H 1.09003 * 110.24549 * 78.03906 * 23 22 3 40 40 H 1.09002 * 110.96982 * 92.70110 * 24 23 22 41 41 H 1.08999 * 110.96710 * 216.46790 * 24 23 22 42 42 H 1.08999 * 110.49056 * 266.11939 * 25 24 23 43 43 H 1.08999 * 110.48791 * 143.47843 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5882 1.9875 -0.8289 5 6 3.5391 1.4454 -0.1546 6 8 4.2471 1.6650 0.8050 7 7 4.0927 1.2037 -1.3593 8 6 3.2931 1.0534 -2.4643 9 1 2.3313 1.5430 -2.5054 10 6 3.7205 0.2714 -3.5296 11 7 4.8076 -0.4578 -3.4149 12 14 2.7500 0.2567 -5.1257 13 1 1.5752 1.1560 -4.9990 14 1 3.6166 0.7271 -6.2362 15 1 2.2867 -1.1251 -5.4105 16 6 5.4781 1.1066 -1.4831 17 6 6.2153 2.2211 -1.8680 18 6 7.5896 2.1110 -1.9864 19 6 8.1815 0.8848 -1.7152 20 6 7.3873 -0.1810 -1.3386 21 7 6.0800 -0.0450 -1.2297 22 7 1.6782 2.0884 1.2641 23 6 0.8352 3.2850 1.3711 24 6 1.0862 3.8404 2.7906 25 6 1.5264 2.5693 3.5532 26 6 2.0760 1.6614 2.4751 27 8 2.7702 0.6872 2.6745 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.1064 -1.0037 -4.1590 34 1 5.7219 3.1599 -2.0721 35 1 8.1882 2.9595 -2.2831 36 1 9.2517 0.7653 -1.7978 37 1 7.8434 -1.1367 -1.1262 38 1 1.1272 4.0203 0.6214 39 1 -0.2149 3.0187 1.2505 40 1 1.8815 4.5857 2.7829 41 1 0.1711 4.2529 3.2155 42 1 0.6719 2.1040 4.0446 43 1 2.3014 2.8101 4.2808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:05 Heat of formation + Delta-G solvation = -5.217559 kcal Electronic energy + Delta-G solvation = -28071.357678 eV Core-core repulsion = 24310.671364 eV Total energy + Delta-G solvation = -3760.686314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30443 -39.37340 -37.72080 -35.79895 -34.78495 -34.20885 -31.70685 -31.34341 -30.58962 -29.41902 -27.26574 -26.56809 -25.01756 -22.57583 -22.44935 -21.64375 -21.55884 -19.86031 -18.64865 -17.75620 -16.47113 -16.40729 -15.89608 -15.45307 -15.43287 -14.77734 -14.64751 -14.17263 -14.03161 -13.60937 -13.37042 -13.26807 -13.15751 -12.83211 -12.65319 -12.39987 -12.30295 -12.20646 -12.03221 -11.56666 -11.36203 -11.27933 -11.17761 -11.14351 -10.85942 -10.73113 -10.63142 -10.41819 -10.39867 -9.46772 -9.06610 -8.85328 -8.79675 -8.44770 -8.06645 -7.87358 -7.73992 -6.32399 -4.11605 2.18783 2.37415 3.07267 3.14693 3.18923 3.20129 3.46096 3.72249 4.04408 4.51173 4.65108 4.68346 4.89198 4.93114 5.06698 5.27267 5.48730 5.53069 5.60320 5.62603 5.63737 5.68947 5.73653 5.79330 5.85917 5.91475 5.95243 6.07978 6.10812 6.16105 6.25755 6.39321 6.49526 6.58250 6.63651 6.93517 7.00220 7.03691 7.11596 7.29631 7.44916 7.73480 7.88349 8.33695 8.83140 8.99913 9.25870 9.36833 9.80456 10.64064 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.005908 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.145424 B = 4738.001798 C = 6042.663304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.166 3.834 4 H 0.103 0.897 5 C 0.475 3.525 6 O -0.564 6.564 7 N -0.410 5.410 8 C -0.352 4.352 9 H 0.101 0.899 10 C 0.045 3.955 11 N -0.842 5.842 12 Si 0.918 3.082 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.279 1.279 16 C 0.437 3.563 17 C -0.175 4.175 18 C -0.082 4.082 19 C -0.206 4.206 20 C 0.111 3.889 21 N -0.433 5.433 22 N -0.608 5.608 23 C 0.105 3.895 24 C -0.130 4.130 25 C -0.155 4.155 26 C 0.521 3.479 27 O -0.507 6.507 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.269 0.731 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 7.304 3.995 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.061 3.939 4 H 0.121 0.879 5 C 0.262 3.738 6 O -0.444 6.444 7 N -0.130 5.130 8 C -0.478 4.478 9 H 0.118 0.882 10 C -0.163 4.163 11 N -0.476 5.476 12 Si 0.744 3.256 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.205 1.205 16 C 0.212 3.788 17 C -0.197 4.197 18 C -0.109 4.109 19 C -0.226 4.226 20 C -0.049 4.049 21 N -0.142 5.142 22 N -0.343 5.343 23 C -0.019 4.019 24 C -0.168 4.168 25 C -0.196 4.196 26 C 0.308 3.692 27 O -0.380 6.380 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.071 5.987 4.662 9.718 hybrid contribution 0.142 0.646 -1.580 1.713 sum -5.929 6.633 3.082 9.415 Atomic orbital electron populations 1.21692 0.95968 1.01152 1.00939 1.21717 0.95251 0.94846 1.04872 1.20630 0.93349 0.95293 0.84649 0.87928 1.20468 0.90032 0.81234 0.82043 1.90618 1.63013 1.52577 1.38241 1.41014 1.01615 1.63542 1.06873 1.19456 1.02693 1.31306 0.94349 0.88155 1.25394 0.96764 0.94270 0.99918 1.69954 1.22182 1.24208 1.31286 0.86007 0.79551 0.78314 0.81687 1.19115 1.20668 1.20511 1.17760 0.85077 0.87145 0.88844 1.21847 0.94311 0.99649 1.03922 1.21140 0.94236 0.97228 0.98282 1.21814 1.00156 0.94925 1.05735 1.22277 0.89045 0.97696 0.95865 1.67250 1.10179 1.24738 1.12080 1.48050 1.50912 1.29240 1.06142 1.22011 0.94664 0.87326 0.97852 1.22552 1.02407 0.97223 0.94590 1.22313 1.02680 0.96278 0.98292 1.20555 0.79354 0.85210 0.84068 1.90714 1.35877 1.27699 1.83717 0.93513 0.92872 0.92966 0.88625 0.90766 0.92001 0.86336 0.86345 0.86447 0.84475 0.90796 0.91426 0.90229 0.89704 0.88577 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.81 37.16 0.36 -1.74 16 2 C -0.13 -2.52 5.27 -26.73 -0.14 -2.66 16 3 C 0.17 3.33 1.93 -69.09 -0.13 3.20 16 4 H 0.10 1.86 6.57 -51.93 -0.34 1.52 16 5 C 0.47 11.90 6.74 -10.99 -0.07 11.82 16 6 O -0.56 -15.90 14.20 -15.04 -0.21 -16.11 16 7 N -0.41 -10.57 2.72 -60.71 -0.17 -10.74 16 8 C -0.35 -8.65 7.88 -14.90 -0.12 -8.77 16 9 H 0.10 2.25 6.30 -52.49 -0.33 1.92 16 10 C 0.04 1.12 5.30 -17.49 -0.09 1.03 16 11 N -0.84 -22.54 10.44 55.49 0.58 -21.96 16 12 Si 0.92 19.13 29.56 -169.99 -5.02 14.10 16 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 16 C 0.44 11.42 3.61 -154.64 -0.56 10.86 16 17 C -0.17 -4.04 10.02 -39.23 -0.39 -4.43 16 18 C -0.08 -1.62 10.17 -39.31 -0.40 -2.02 16 19 C -0.21 -3.97 10.11 -39.39 -0.40 -4.37 16 20 C 0.11 2.45 11.18 -17.56 -0.20 2.26 16 21 N -0.43 -11.44 8.86 -12.34 -0.11 -11.55 16 22 N -0.61 -10.63 2.24 -166.16 -0.37 -11.01 16 23 C 0.10 1.26 7.30 -3.12 -0.02 1.24 16 24 C -0.13 -1.32 7.18 -25.10 -0.18 -1.50 16 25 C -0.16 -2.01 6.86 -26.74 -0.18 -2.20 16 26 C 0.52 9.99 6.69 -10.86 -0.07 9.92 16 27 O -0.51 -12.35 14.83 -15.05 -0.22 -12.57 16 28 H 0.05 0.65 7.79 -51.93 -0.40 0.25 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.08 7.12 -51.93 -0.37 1.71 16 32 H 0.07 1.66 6.58 -51.93 -0.34 1.31 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 35 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.14 2.60 8.06 -52.49 -0.42 2.17 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -35.28 354.27 -8.79 -44.07 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.00 Total: 7.78 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -2.60 Total: 12.65 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.07 Total: -55.25 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.44 Total: -28.69 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.28 -8.79 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.850 kcal (2) G-P(sol) polarization free energy of solvation -35.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds