Wall clock time and date at job start Tue Mar 31 2020 11:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47180 * 2 1 4 4 H 1.09004 * 109.46477 * 306.24426 * 3 2 1 5 5 C 1.50697 * 109.47318 * 186.24855 * 3 2 1 6 6 O 1.21268 * 119.99712 * 255.91318 * 5 3 2 7 7 N 1.34767 * 120.00354 * 75.90597 * 5 3 2 8 8 C 1.37218 * 120.00343 * 4.83083 * 7 5 3 9 9 H 1.07999 * 119.99505 * 27.85651 * 8 7 5 10 10 C 1.38892 * 120.00217 * 207.86452 * 8 7 5 11 11 N 1.31403 * 120.00074 * 8.56433 * 10 8 7 12 12 Si 1.86799 * 119.99608 * 188.57228 * 10 8 7 13 13 H 1.48492 * 109.47568 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47067 * 119.99856 * 12 10 8 15 15 H 1.48501 * 109.46937 * 239.99389 * 12 10 8 16 16 C 1.39430 * 120.00307 * 184.82367 * 7 5 3 17 17 C 1.39059 * 119.70296 * 264.37423 * 16 7 5 18 18 C 1.38377 * 119.10722 * 179.97438 * 17 16 7 19 19 C 1.38836 * 118.48475 * 0.02562 * 18 17 16 20 20 C 1.38147 * 119.31397 * 0.02562 * 19 18 17 21 21 N 1.31886 * 120.84745 * 359.74096 * 20 19 18 22 22 N 1.46491 * 109.47081 * 66.24342 * 3 2 1 23 23 C 1.46769 * 124.34918 * 240.00294 * 22 3 2 24 24 C 1.54479 * 105.47389 * 197.03825 * 23 22 3 25 25 C 1.54629 * 101.76503 * 334.58443 * 24 23 22 26 26 C 1.34422 * 124.35197 * 60.02448 * 22 3 2 27 27 O 1.21277 * 124.93591 * 359.30935 * 26 22 3 28 28 H 1.08999 * 109.46851 * 300.00076 * 1 2 3 29 29 H 1.09000 * 109.46808 * 60.00367 * 1 2 3 30 30 H 1.09000 * 109.46819 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47330 * 240.00143 * 2 1 3 32 32 H 1.08999 * 109.47489 * 119.99937 * 2 1 3 33 33 H 0.97007 * 120.00558 * 180.02562 * 11 10 8 34 34 H 1.08007 * 120.44802 * 359.95637 * 17 16 7 35 35 H 1.07991 * 120.76148 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.34117 * 180.02562 * 19 18 17 37 37 H 1.07996 * 119.57172 * 180.02562 * 20 19 18 38 38 H 1.08998 * 110.24281 * 316.03651 * 23 22 3 39 39 H 1.09003 * 110.24549 * 78.03906 * 23 22 3 40 40 H 1.09002 * 110.96982 * 92.70110 * 24 23 22 41 41 H 1.08999 * 110.96710 * 216.46790 * 24 23 22 42 42 H 1.08999 * 110.49056 * 266.11939 * 25 24 23 43 43 H 1.08999 * 110.48791 * 143.47843 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5882 1.9875 -0.8289 5 6 3.5391 1.4454 -0.1546 6 8 4.2471 1.6650 0.8050 7 7 4.0927 1.2037 -1.3593 8 6 3.2931 1.0534 -2.4643 9 1 2.3313 1.5430 -2.5054 10 6 3.7205 0.2714 -3.5296 11 7 4.8076 -0.4578 -3.4149 12 14 2.7500 0.2567 -5.1257 13 1 1.5752 1.1560 -4.9990 14 1 3.6166 0.7271 -6.2362 15 1 2.2867 -1.1251 -5.4105 16 6 5.4781 1.1066 -1.4831 17 6 6.2153 2.2211 -1.8680 18 6 7.5896 2.1110 -1.9864 19 6 8.1815 0.8848 -1.7152 20 6 7.3873 -0.1810 -1.3386 21 7 6.0800 -0.0450 -1.2297 22 7 1.6782 2.0884 1.2641 23 6 0.8352 3.2850 1.3711 24 6 1.0862 3.8404 2.7906 25 6 1.5264 2.5693 3.5532 26 6 2.0760 1.6614 2.4751 27 8 2.7702 0.6872 2.6745 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.1064 -1.0037 -4.1590 34 1 5.7219 3.1599 -2.0721 35 1 8.1882 2.9595 -2.2831 36 1 9.2517 0.7653 -1.7978 37 1 7.8434 -1.1367 -1.1262 38 1 1.1272 4.0203 0.6214 39 1 -0.2149 3.0187 1.2505 40 1 1.8815 4.5857 2.7829 41 1 0.1711 4.2529 3.2155 42 1 0.6719 2.1040 4.0446 43 1 2.3014 2.8101 4.2808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892471668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:04 Heat of formation + Delta-G solvation = -27.415007 kcal Electronic energy + Delta-G solvation = -28072.320231 eV Core-core repulsion = 24310.671364 eV Total energy + Delta-G solvation = -3761.648867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84654 -40.98557 -39.45380 -37.25789 -36.67820 -35.64005 -33.60554 -33.05687 -31.81934 -31.12485 -28.37077 -28.02616 -26.91706 -24.24205 -24.14774 -23.05810 -22.61086 -21.57184 -20.36497 -19.35046 -18.20032 -17.62146 -17.33444 -17.22101 -17.07532 -16.51317 -16.27046 -15.69361 -15.51984 -15.17938 -15.00532 -14.79793 -14.49198 -14.24391 -14.13857 -13.86499 -13.76146 -13.65257 -13.29864 -13.20612 -12.94272 -12.82153 -12.74801 -12.50576 -12.34943 -12.08311 -12.00726 -11.91154 -11.74974 -11.32939 -10.68635 -10.56412 -10.45122 -10.25264 -9.76526 -9.57520 -9.44936 -8.19160 -6.05176 0.47193 0.71866 1.40663 1.44980 1.58150 1.75911 1.87911 2.12946 2.31658 2.82392 3.08798 3.26783 3.55147 3.71948 3.91213 4.04496 4.08178 4.11434 4.13522 4.15939 4.31781 4.42988 4.48460 4.49734 4.56077 4.71320 4.74522 4.78248 4.90068 4.91890 4.97041 5.11916 5.14913 5.16657 5.29242 5.33689 5.37934 5.39301 5.40897 5.71795 5.77461 6.06414 6.41342 6.46090 7.08313 7.38188 7.48840 7.56412 7.93852 8.76476 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.005908 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.145424 B = 4738.001798 C = 6042.663304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 C 0.173 3.827 4 H 0.124 0.876 5 C 0.456 3.544 6 O -0.609 6.609 7 N -0.419 5.419 8 C -0.358 4.358 9 H 0.120 0.880 10 C -0.004 4.004 11 N -0.876 5.876 12 Si 0.988 3.012 13 H -0.242 1.242 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.400 3.600 17 C -0.199 4.199 18 C -0.075 4.075 19 C -0.192 4.192 20 C 0.088 3.912 21 N -0.484 5.484 22 N -0.610 5.610 23 C 0.094 3.906 24 C -0.115 4.115 25 C -0.146 4.146 26 C 0.499 3.501 27 O -0.577 6.577 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.122 0.878 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.300 9.749 3.288 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.158 4.158 3 C 0.067 3.933 4 H 0.142 0.858 5 C 0.246 3.754 6 O -0.493 6.493 7 N -0.138 5.138 8 C -0.484 4.484 9 H 0.137 0.863 10 C -0.208 4.208 11 N -0.512 5.512 12 Si 0.812 3.188 13 H -0.164 1.164 14 H -0.211 1.211 15 H -0.211 1.211 16 C 0.175 3.825 17 C -0.221 4.221 18 C -0.102 4.102 19 C -0.211 4.211 20 C -0.072 4.072 21 N -0.195 5.195 22 N -0.343 5.343 23 C -0.027 4.027 24 C -0.152 4.152 25 C -0.186 4.186 26 C 0.288 3.712 27 O -0.456 6.456 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.183 0.817 36 H 0.184 0.816 37 H 0.175 0.825 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.000 8.493 3.943 12.316 hybrid contribution 0.864 -0.141 -1.330 1.592 sum -7.136 8.351 2.613 11.291 Atomic orbital electron populations 1.21612 0.91720 1.02403 1.02699 1.21569 0.98737 0.94100 1.01372 1.20494 0.89967 0.95993 0.86873 0.85827 1.21451 0.92210 0.80436 0.81347 1.90561 1.64609 1.54652 1.39443 1.41359 1.02220 1.62855 1.07415 1.19932 1.03258 1.31209 0.94043 0.86261 1.26329 0.97645 0.93720 1.03126 1.70181 1.24058 1.25168 1.31762 0.84936 0.78753 0.78204 0.76938 1.16432 1.21142 1.21136 1.18164 0.85608 0.88111 0.90641 1.22062 0.96110 0.99055 1.04879 1.21686 0.93152 0.98947 0.96374 1.22279 1.02250 0.93592 1.02995 1.22835 0.88384 0.99797 0.96135 1.67142 1.12495 1.25889 1.13942 1.48265 1.50882 1.30468 1.04731 1.22478 0.95432 0.85410 0.99427 1.22622 1.04389 0.95461 0.92740 1.22344 1.03349 0.96380 0.96500 1.21777 0.78416 0.85008 0.85988 1.90666 1.39048 1.30921 1.84987 0.91989 0.90642 0.92096 0.91739 0.94665 0.92744 0.85950 0.81712 0.81572 0.82514 0.90017 0.87926 0.90589 0.85015 0.85657 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.81 71.98 0.71 -2.92 16 2 C -0.12 -4.85 5.27 30.60 0.16 -4.69 16 3 C 0.17 7.07 1.93 44.25 0.09 7.15 16 4 H 0.12 4.39 6.57 -2.38 -0.02 4.37 16 5 C 0.46 24.08 6.74 87.66 0.59 24.67 16 6 O -0.61 -36.60 14.20 16.71 0.24 -36.36 16 7 N -0.42 -22.61 2.72 -464.40 -1.26 -23.87 16 8 C -0.36 -18.03 7.88 84.01 0.66 -17.36 16 9 H 0.12 5.30 6.30 -2.91 -0.02 5.28 16 10 C 0.00 -0.20 5.30 84.91 0.45 0.25 16 11 N -0.88 -48.73 10.44 21.65 0.23 -48.51 16 12 Si 0.99 39.31 29.56 68.60 2.03 41.34 16 13 H -0.24 -8.52 7.11 99.48 0.71 -7.81 16 14 H -0.29 -11.46 7.11 99.48 0.71 -10.76 16 15 H -0.29 -11.52 7.11 99.48 0.71 -10.81 16 16 C 0.40 21.82 3.61 132.90 0.48 22.30 16 17 C -0.20 -9.38 10.02 22.50 0.23 -9.15 16 18 C -0.08 -2.87 10.17 22.45 0.23 -2.64 16 19 C -0.19 -7.09 10.11 22.39 0.23 -6.86 16 20 C 0.09 3.96 11.18 84.66 0.95 4.91 16 21 N -0.48 -26.92 8.86 -192.96 -1.71 -28.63 16 22 N -0.61 -21.05 2.24 -798.20 -1.79 -22.83 16 23 C 0.09 1.95 7.30 86.83 0.63 2.58 16 24 C -0.11 -1.89 7.18 31.65 0.23 -1.67 16 25 C -0.15 -3.52 6.86 30.59 0.21 -3.31 16 26 C 0.50 19.51 6.69 87.90 0.59 20.10 16 27 O -0.58 -30.13 14.83 16.68 0.25 -29.88 16 28 H 0.06 1.58 7.79 -2.39 -0.02 1.56 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 2.98 7.12 -2.39 -0.02 2.96 16 32 H 0.03 1.69 6.58 -2.39 -0.02 1.67 16 33 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 34 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 35 H 0.17 4.62 8.06 -2.92 -0.02 4.60 16 36 H 0.17 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.16 6.08 8.06 -2.91 -0.02 6.06 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -87.16 354.27 5.41 -81.75 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 1.02 Total: 33.63 kcal Atomic # 6 Polarization: 26.94 SS G_CDS: 6.42 Total: 33.37 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -4.54 Total: -123.84 kcal Atomic # 8 Polarization: -66.72 SS G_CDS: 0.48 Total: -66.24 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -87.16 5.41 -81.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.334 kcal (2) G-P(sol) polarization free energy of solvation -87.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds