Wall clock time and date at job start Tue Mar 31 2020 11:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 H 1.08997 * 109.47259 * 60.77771 * 3 2 1 5 5 C 1.50699 * 109.47109 * 180.77389 * 3 2 1 6 6 O 1.21273 * 119.99790 * 54.33150 * 5 3 2 7 7 N 1.34770 * 120.00429 * 234.33514 * 5 3 2 8 8 C 1.37218 * 120.00117 * 215.15658 * 7 5 3 9 9 H 1.07996 * 119.99832 * 237.90265 * 8 7 5 10 10 C 1.38889 * 120.00124 * 57.90150 * 8 7 5 11 11 N 1.31411 * 120.00078 * 45.85133 * 10 8 7 12 12 Si 1.86797 * 119.99849 * 225.85695 * 10 8 7 13 13 H 1.48501 * 109.47326 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47358 * 120.00313 * 12 10 8 15 15 H 1.48504 * 109.46764 * 239.99835 * 12 10 8 16 16 C 1.39429 * 119.99952 * 35.14733 * 7 5 3 17 17 C 1.39061 * 119.69500 * 14.59873 * 16 7 5 18 18 C 1.38386 * 119.09845 * 179.97438 * 17 16 7 19 19 C 1.38825 * 118.49076 * 359.97438 * 18 17 16 20 20 C 1.38151 * 119.31083 * 0.02562 * 19 18 17 21 21 N 1.31879 * 120.85436 * 359.74073 * 20 19 18 22 22 N 1.46501 * 109.47235 * 300.77721 * 3 2 1 23 23 C 1.46753 * 124.35117 * 120.00100 * 22 3 2 24 24 C 1.54480 * 105.47478 * 197.01535 * 23 22 3 25 25 C 1.54625 * 101.76591 * 334.58173 * 24 23 22 26 26 C 1.34424 * 124.34606 * 299.70118 * 22 3 2 27 27 O 1.21274 * 124.94430 * 359.56502 * 26 22 3 28 28 H 1.09007 * 109.47301 * 305.20719 * 1 2 3 29 29 H 1.09004 * 109.47504 * 65.20663 * 1 2 3 30 30 H 1.09002 * 109.47164 * 185.20771 * 1 2 3 31 31 H 1.08998 * 109.46734 * 240.00414 * 2 1 3 32 32 H 1.08994 * 109.47383 * 120.00127 * 2 1 3 33 33 H 0.97003 * 120.00314 * 184.97123 * 11 10 8 34 34 H 1.08003 * 120.45269 * 359.95020 * 17 16 7 35 35 H 1.08000 * 120.75416 * 180.02562 * 18 17 16 36 36 H 1.07998 * 120.34232 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.56898 * 179.97438 * 20 19 18 38 38 H 1.09003 * 110.24787 * 316.02001 * 23 22 3 39 39 H 1.09002 * 110.24669 * 78.01356 * 23 22 3 40 40 H 1.09001 * 110.96691 * 92.70574 * 24 23 22 41 41 H 1.08999 * 110.97066 * 216.46479 * 24 23 22 42 42 H 1.09000 * 110.48405 * 143.46918 * 25 24 23 43 43 H 1.08992 * 110.48881 * 265.99150 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6880 1.9523 0.8968 5 6 3.5468 1.4426 -0.0192 6 8 4.1422 0.8341 -0.8828 7 7 4.2328 2.1188 0.9234 8 6 5.4132 2.7394 0.6002 9 1 6.3204 2.4816 1.1263 10 6 5.4412 3.6989 -0.4035 11 7 4.5216 4.6369 -0.4417 12 14 6.7860 3.6561 -1.6993 13 1 7.6921 2.5097 -1.4347 14 1 6.1736 3.5038 -3.0435 15 1 7.5619 4.9214 -1.6494 16 6 3.7429 2.1881 2.2270 17 6 2.7294 1.3248 2.6288 18 6 2.2528 1.4039 3.9256 19 6 2.8089 2.3470 4.7792 20 6 3.8134 3.1726 4.3124 21 7 4.2508 3.0713 3.0724 22 7 1.5364 2.1386 -1.1867 23 6 0.6896 3.3365 -1.1470 24 6 0.0648 3.4464 -2.5556 25 6 1.1058 2.6998 -3.4214 26 6 1.7953 1.7652 -2.4518 27 8 2.4800 0.8161 -2.7697 28 1 -0.3634 0.5925 0.8397 29 1 -0.3634 0.4310 -0.9330 30 1 -0.3633 -1.0234 0.0933 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.4981 5.2633 -1.1820 34 1 2.3196 0.6027 1.9381 35 1 1.4667 0.7463 4.2661 36 1 2.4599 2.4343 5.7975 37 1 4.2487 3.9081 4.9728 38 1 -0.0917 3.2215 -0.3957 39 1 1.2934 4.2183 -0.9324 40 1 -0.9036 2.9474 -2.5927 41 1 -0.0231 4.4884 -2.8631 42 1 0.6105 2.1360 -4.2119 43 1 1.8226 3.4022 -3.8466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:09 Heat of formation + Delta-G solvation = 6.474436 kcal Electronic energy + Delta-G solvation = -28624.080744 eV Core-core repulsion = 24863.901433 eV Total energy + Delta-G solvation = -3760.179311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66808 -39.55155 -38.06204 -35.90310 -34.94892 -34.41197 -32.28567 -31.66394 -30.82467 -29.16664 -27.38041 -27.14855 -24.92171 -22.96823 -22.44000 -21.83100 -21.63405 -20.25457 -18.46947 -17.70854 -17.01594 -16.63119 -16.03194 -15.57201 -15.41081 -14.86718 -14.79280 -14.41361 -14.25550 -13.87814 -13.64060 -13.31694 -13.19224 -12.92520 -12.68226 -12.61175 -12.50686 -12.42479 -12.20484 -11.93673 -11.63153 -11.39283 -11.33006 -11.12519 -10.92335 -10.79124 -10.73981 -10.63217 -10.33456 -9.44744 -9.29011 -9.15390 -8.93530 -8.59557 -8.40574 -8.10744 -7.17285 -6.50612 -4.14532 1.83190 2.01158 2.92581 3.16951 3.25552 3.35221 3.44667 3.80875 3.98880 4.41709 4.60879 4.65319 4.67483 4.89511 4.96155 5.05262 5.19340 5.22301 5.31486 5.36566 5.38872 5.54953 5.64553 5.70151 5.73394 5.76215 5.80336 5.85419 5.92574 5.96476 6.04401 6.18627 6.20078 6.26634 6.31697 6.53567 6.63094 6.82161 6.94509 7.29198 7.45138 7.60024 8.09005 8.34918 8.69268 8.76997 8.98773 9.22905 9.67415 10.39341 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.008145 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.025458 B = 3437.038737 C = 5074.404330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.136 3.864 4 H 0.107 0.893 5 C 0.503 3.497 6 O -0.475 6.475 7 N -0.392 5.392 8 C -0.347 4.347 9 H 0.087 0.913 10 C 0.089 3.911 11 N -0.797 5.797 12 Si 0.883 3.117 13 H -0.261 1.261 14 H -0.277 1.277 15 H -0.283 1.283 16 C 0.373 3.627 17 C -0.272 4.272 18 C -0.045 4.045 19 C -0.253 4.253 20 C 0.137 3.863 21 N -0.488 5.488 22 N -0.600 5.600 23 C 0.104 3.896 24 C -0.127 4.127 25 C -0.155 4.155 26 C 0.509 3.491 27 O -0.500 6.500 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.132 -1.102 2.636 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.029 3.971 4 H 0.125 0.875 5 C 0.289 3.711 6 O -0.345 6.345 7 N -0.104 5.104 8 C -0.472 4.472 9 H 0.105 0.895 10 C -0.126 4.126 11 N -0.426 5.426 12 Si 0.707 3.293 13 H -0.184 1.184 14 H -0.203 1.203 15 H -0.210 1.210 16 C 0.142 3.858 17 C -0.296 4.296 18 C -0.070 4.070 19 C -0.276 4.276 20 C -0.024 4.024 21 N -0.202 5.202 22 N -0.336 5.336 23 C -0.019 4.019 24 C -0.165 4.165 25 C -0.195 4.195 26 C 0.296 3.704 27 O -0.373 6.373 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.732 -1.274 1.478 11.894 hybrid contribution -0.092 -0.057 -0.138 0.175 sum -11.824 -1.331 1.340 11.974 Atomic orbital electron populations 1.21670 0.95058 1.01361 1.01753 1.21929 0.96479 0.95174 1.04088 1.21465 0.92706 0.94303 0.88628 0.87485 1.20782 0.88630 0.78319 0.83323 1.90656 1.70852 1.36604 1.36402 1.41342 1.20780 1.44136 1.04120 1.18691 0.84671 1.21209 1.22624 0.89497 1.25308 0.97421 0.91263 0.98599 1.70471 1.36443 1.08747 1.26910 0.86659 0.82548 0.78285 0.81816 1.18436 1.20251 1.20955 1.19592 0.87667 0.88715 0.89810 1.22068 1.03322 1.05656 0.98565 1.21119 0.97261 0.96151 0.92514 1.21690 1.03164 1.01883 1.00860 1.22512 0.92513 0.96004 0.91410 1.67348 1.29776 1.20116 1.03006 1.47968 1.51389 1.28921 1.05323 1.22097 0.93731 0.88474 0.97628 1.22542 0.98140 1.01637 0.94208 1.22315 0.99364 0.99454 0.98412 1.20813 0.80740 0.85231 0.83662 1.90777 1.37297 1.28802 1.80449 0.92805 0.92718 0.92623 0.89139 0.90540 0.92356 0.84878 0.86050 0.86274 0.83839 0.90804 0.90317 0.90344 0.89480 0.88611 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.67 37.16 0.36 -1.45 16 2 C -0.14 -2.33 4.72 -26.73 -0.13 -2.45 16 3 C 0.14 2.65 1.77 -69.08 -0.12 2.53 16 4 H 0.11 2.01 5.36 -51.93 -0.28 1.73 16 5 C 0.50 12.51 5.24 -10.99 -0.06 12.45 16 6 O -0.48 -13.51 14.69 -16.14 -0.24 -13.75 16 7 N -0.39 -10.20 2.75 -60.71 -0.17 -10.37 16 8 C -0.35 -9.87 8.01 -14.90 -0.12 -9.99 16 9 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 10 C 0.09 2.47 4.98 -17.49 -0.09 2.38 16 11 N -0.80 -21.67 13.92 55.49 0.77 -20.90 16 12 Si 0.88 22.09 29.69 -169.99 -5.05 17.04 16 13 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 C 0.37 8.62 6.86 -154.64 -1.06 7.56 16 17 C -0.27 -5.10 7.55 -39.22 -0.30 -5.40 16 18 C -0.04 -0.69 10.17 -39.31 -0.40 -1.09 16 19 C -0.25 -3.87 10.11 -39.40 -0.40 -4.27 16 20 C 0.14 2.47 11.18 -17.56 -0.20 2.27 16 21 N -0.49 -11.22 9.59 -12.34 -0.12 -11.34 16 22 N -0.60 -11.00 2.12 -166.16 -0.35 -11.35 16 23 C 0.10 1.48 7.30 -3.13 -0.02 1.46 16 24 C -0.13 -1.40 7.18 -25.10 -0.18 -1.58 16 25 C -0.16 -2.20 6.86 -26.74 -0.18 -2.38 16 26 C 0.51 10.03 7.37 -10.85 -0.08 9.95 16 27 O -0.50 -12.03 14.31 -16.15 -0.23 -12.26 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.71 7.75 -51.93 -0.40 0.31 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.78 6.69 -51.93 -0.35 1.43 16 32 H 0.08 1.20 6.21 -51.93 -0.32 0.88 16 33 H 0.27 6.76 8.32 -40.82 -0.34 6.43 16 34 H 0.13 2.33 3.05 -52.48 -0.16 2.17 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -35.21 352.10 -8.77 -43.98 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.72 Total: 3.64 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -2.97 Total: 9.99 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.13 Total: -53.96 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.47 Total: -26.00 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.05 Total: 17.04 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.21 -8.77 -43.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.454 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds