Wall clock time and date at job start Tue Mar 31 2020 11:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 H 1.08997 * 109.47259 * 60.77771 * 3 2 1 5 5 C 1.50699 * 109.47109 * 180.77389 * 3 2 1 6 6 O 1.21273 * 119.99790 * 54.33150 * 5 3 2 7 7 N 1.34770 * 120.00429 * 234.33514 * 5 3 2 8 8 C 1.37218 * 120.00117 * 215.15658 * 7 5 3 9 9 H 1.07996 * 119.99832 * 237.90265 * 8 7 5 10 10 C 1.38889 * 120.00124 * 57.90150 * 8 7 5 11 11 N 1.31411 * 120.00078 * 45.85133 * 10 8 7 12 12 Si 1.86797 * 119.99849 * 225.85695 * 10 8 7 13 13 H 1.48501 * 109.47326 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47358 * 120.00313 * 12 10 8 15 15 H 1.48504 * 109.46764 * 239.99835 * 12 10 8 16 16 C 1.39429 * 119.99952 * 35.14733 * 7 5 3 17 17 C 1.39061 * 119.69500 * 14.59873 * 16 7 5 18 18 C 1.38386 * 119.09845 * 179.97438 * 17 16 7 19 19 C 1.38825 * 118.49076 * 359.97438 * 18 17 16 20 20 C 1.38151 * 119.31083 * 0.02562 * 19 18 17 21 21 N 1.31879 * 120.85436 * 359.74073 * 20 19 18 22 22 N 1.46501 * 109.47235 * 300.77721 * 3 2 1 23 23 C 1.46753 * 124.35117 * 120.00100 * 22 3 2 24 24 C 1.54480 * 105.47478 * 197.01535 * 23 22 3 25 25 C 1.54625 * 101.76591 * 334.58173 * 24 23 22 26 26 C 1.34424 * 124.34606 * 299.70118 * 22 3 2 27 27 O 1.21274 * 124.94430 * 359.56502 * 26 22 3 28 28 H 1.09007 * 109.47301 * 305.20719 * 1 2 3 29 29 H 1.09004 * 109.47504 * 65.20663 * 1 2 3 30 30 H 1.09002 * 109.47164 * 185.20771 * 1 2 3 31 31 H 1.08998 * 109.46734 * 240.00414 * 2 1 3 32 32 H 1.08994 * 109.47383 * 120.00127 * 2 1 3 33 33 H 0.97003 * 120.00314 * 184.97123 * 11 10 8 34 34 H 1.08003 * 120.45269 * 359.95020 * 17 16 7 35 35 H 1.08000 * 120.75416 * 180.02562 * 18 17 16 36 36 H 1.07998 * 120.34232 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.56898 * 179.97438 * 20 19 18 38 38 H 1.09003 * 110.24787 * 316.02001 * 23 22 3 39 39 H 1.09002 * 110.24669 * 78.01356 * 23 22 3 40 40 H 1.09001 * 110.96691 * 92.70574 * 24 23 22 41 41 H 1.08999 * 110.97066 * 216.46479 * 24 23 22 42 42 H 1.09000 * 110.48405 * 143.46918 * 25 24 23 43 43 H 1.08992 * 110.48881 * 265.99150 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6880 1.9523 0.8968 5 6 3.5468 1.4426 -0.0192 6 8 4.1422 0.8341 -0.8828 7 7 4.2328 2.1188 0.9234 8 6 5.4132 2.7394 0.6002 9 1 6.3204 2.4816 1.1263 10 6 5.4412 3.6989 -0.4035 11 7 4.5216 4.6369 -0.4417 12 14 6.7860 3.6561 -1.6993 13 1 7.6921 2.5097 -1.4347 14 1 6.1736 3.5038 -3.0435 15 1 7.5619 4.9214 -1.6494 16 6 3.7429 2.1881 2.2270 17 6 2.7294 1.3248 2.6288 18 6 2.2528 1.4039 3.9256 19 6 2.8089 2.3470 4.7792 20 6 3.8134 3.1726 4.3124 21 7 4.2508 3.0713 3.0724 22 7 1.5364 2.1386 -1.1867 23 6 0.6896 3.3365 -1.1470 24 6 0.0648 3.4464 -2.5556 25 6 1.1058 2.6998 -3.4214 26 6 1.7953 1.7652 -2.4518 27 8 2.4800 0.8161 -2.7697 28 1 -0.3634 0.5925 0.8397 29 1 -0.3634 0.4310 -0.9330 30 1 -0.3633 -1.0234 0.0933 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.4981 5.2633 -1.1820 34 1 2.3196 0.6027 1.9381 35 1 1.4667 0.7463 4.2661 36 1 2.4599 2.4343 5.7975 37 1 4.2487 3.9081 4.9728 38 1 -0.0917 3.2215 -0.3957 39 1 1.2934 4.2183 -0.9324 40 1 -0.9036 2.9474 -2.5927 41 1 -0.0231 4.4884 -2.8631 42 1 0.6105 2.1360 -4.2119 43 1 1.8226 3.4022 -3.8466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892471671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:08 Heat of formation + Delta-G solvation = -15.627223 kcal Electronic energy + Delta-G solvation = -28625.039143 eV Core-core repulsion = 24863.901433 eV Total energy + Delta-G solvation = -3761.137711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.22642 -41.02094 -39.72594 -37.40951 -36.67511 -35.89479 -34.25085 -33.10858 -32.01242 -30.74069 -28.79976 -28.42519 -26.74445 -24.45315 -23.91558 -23.18633 -22.72398 -21.91828 -19.99222 -19.52390 -18.59308 -18.04890 -17.48965 -17.24226 -16.91641 -16.51264 -16.26403 -16.07522 -15.78797 -15.49131 -15.11462 -14.70338 -14.60524 -14.43949 -14.17609 -13.91610 -13.85562 -13.79967 -13.74037 -13.39139 -13.29438 -12.91870 -12.81321 -12.51523 -12.42600 -12.37548 -12.12960 -11.88976 -11.81429 -11.16180 -10.99105 -10.68364 -10.56683 -10.43951 -9.99058 -9.62544 -9.02129 -8.45939 -6.25218 0.34163 0.62082 1.09870 1.25495 1.38378 1.44575 1.72369 2.11445 2.25197 2.52677 2.73591 3.25250 3.38771 3.57826 3.67819 3.84182 3.91560 3.92394 4.03390 4.16000 4.20457 4.30100 4.41887 4.44808 4.47788 4.62140 4.71001 4.75086 4.77320 4.81882 4.96033 5.02931 5.05218 5.15460 5.21656 5.27916 5.32621 5.33905 5.46835 5.58477 5.90374 6.10912 6.22651 6.55960 6.77762 7.02406 7.26261 7.57670 7.79183 8.32497 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.008145 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.025458 B = 3437.038737 C = 5074.404330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 C 0.145 3.855 4 H 0.117 0.883 5 C 0.493 3.507 6 O -0.534 6.534 7 N -0.415 5.415 8 C -0.369 4.369 9 H 0.055 0.945 10 C 0.061 3.939 11 N -0.811 5.811 12 Si 0.920 3.080 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.258 1.258 16 C 0.338 3.662 17 C -0.270 4.270 18 C -0.033 4.033 19 C -0.220 4.220 20 C 0.115 3.885 21 N -0.537 5.537 22 N -0.603 5.603 23 C 0.095 3.905 24 C -0.106 4.106 25 C -0.150 4.150 26 C 0.488 3.512 27 O -0.557 6.557 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.272 0.728 34 H 0.142 0.858 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.346 -0.619 4.941 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.170 4.170 3 C 0.038 3.962 4 H 0.135 0.865 5 C 0.283 3.717 6 O -0.408 6.408 7 N -0.129 5.129 8 C -0.494 4.494 9 H 0.073 0.927 10 C -0.152 4.152 11 N -0.441 5.441 12 Si 0.744 3.256 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.183 1.183 16 C 0.109 3.891 17 C -0.294 4.294 18 C -0.059 4.059 19 C -0.242 4.242 20 C -0.044 4.044 21 N -0.253 5.253 22 N -0.338 5.338 23 C -0.027 4.027 24 C -0.143 4.143 25 C -0.190 4.190 26 C 0.277 3.723 27 O -0.435 6.435 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.192 0.808 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.125 0.875 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.985 -0.721 3.867 16.462 hybrid contribution 1.197 -0.229 -0.551 1.337 sum -14.788 -0.950 3.316 15.185 Atomic orbital electron populations 1.21626 0.91227 1.03219 1.02672 1.21892 0.99594 0.92883 1.02664 1.21381 0.88803 0.96362 0.89628 0.86525 1.21748 0.90965 0.76901 0.82111 1.90606 1.72397 1.39224 1.38610 1.41349 1.20960 1.44756 1.05842 1.18404 0.85469 1.21725 1.23844 0.92729 1.25699 0.98978 0.91162 0.99329 1.70446 1.37321 1.08928 1.27426 0.86085 0.81112 0.78576 0.79812 1.20146 1.21209 1.18313 1.19675 0.90299 0.90855 0.88275 1.22249 1.02124 1.04487 1.00510 1.21726 0.97446 0.96184 0.90554 1.22253 1.00172 0.99023 1.02731 1.23110 0.93628 0.97439 0.90213 1.67209 1.31465 1.21439 1.05186 1.48232 1.51178 1.29673 1.04680 1.22390 0.93557 0.85705 1.01028 1.22597 0.98033 1.03105 0.90561 1.22368 0.99859 0.98593 0.98226 1.21878 0.80213 0.85195 0.85056 1.90738 1.39777 1.31492 1.81489 0.90432 0.92876 0.90582 0.92839 0.89783 0.91786 0.84056 0.80778 0.81283 0.81371 0.87527 0.93084 0.86926 0.86937 0.86227 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.67 71.98 0.70 -2.24 16 2 C -0.13 -4.41 4.72 30.59 0.14 -4.27 16 3 C 0.15 5.74 1.77 44.25 0.08 5.82 16 4 H 0.12 4.29 5.36 -2.39 -0.01 4.27 16 5 C 0.49 25.96 5.24 87.66 0.46 26.42 16 6 O -0.53 -32.85 14.69 17.75 0.26 -32.59 16 7 N -0.42 -22.80 2.75 -464.39 -1.28 -24.08 16 8 C -0.37 -22.49 8.01 84.01 0.67 -21.82 16 9 H 0.05 3.53 8.06 -2.91 -0.02 3.50 16 10 C 0.06 3.59 4.98 84.91 0.42 4.01 16 11 N -0.81 -45.96 13.92 21.65 0.30 -45.66 16 12 Si 0.92 47.81 29.69 68.60 2.04 49.85 16 13 H -0.28 -14.91 7.11 99.48 0.71 -14.20 16 14 H -0.29 -15.12 7.11 99.48 0.71 -14.42 16 15 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 16 C 0.34 15.91 6.86 132.90 0.91 16.83 16 17 C -0.27 -9.65 7.55 22.50 0.17 -9.48 16 18 C -0.03 -0.86 10.17 22.45 0.23 -0.64 16 19 C -0.22 -5.58 10.11 22.39 0.23 -5.35 16 20 C 0.12 3.90 11.18 84.66 0.95 4.84 16 21 N -0.54 -25.02 9.59 -192.95 -1.85 -26.87 16 22 N -0.60 -22.13 2.12 -798.21 -1.70 -23.83 16 23 C 0.09 2.53 7.30 86.83 0.63 3.17 16 24 C -0.11 -1.97 7.18 31.65 0.23 -1.74 16 25 C -0.15 -4.10 6.86 30.59 0.21 -3.89 16 26 C 0.49 19.72 7.37 87.90 0.65 20.37 16 27 O -0.56 -28.52 14.31 17.75 0.25 -28.27 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.05 1.22 7.75 -2.38 -0.02 1.21 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 2.21 6.69 -2.39 -0.02 2.19 16 32 H 0.08 2.59 6.21 -2.39 -0.01 2.58 16 33 H 0.27 14.30 8.32 -92.71 -0.77 13.53 16 34 H 0.14 4.75 3.05 -2.91 -0.01 4.74 16 35 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.17 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -88.48 352.10 5.73 -82.75 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.03 Total: 16.65 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 6.68 Total: 32.04 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -4.52 Total: -120.43 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: 0.51 Total: -60.85 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.04 Total: 49.85 kcal Total: -88.48 5.73 -82.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.120 kcal (2) G-P(sol) polarization free energy of solvation -88.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds