Wall clock time and date at job start Tue Mar 31 2020 11:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47399 * 2 1 4 4 N 1.46502 * 109.47342 * 119.99820 * 2 1 3 5 5 C 1.34414 * 124.35215 * 300.02856 * 4 2 1 6 6 O 1.21279 * 124.94163 * 0.66982 * 5 4 2 7 7 C 1.51276 * 110.11765 * 180.40391 * 5 4 2 8 8 C 1.54631 * 104.19558 * 16.24889 * 7 5 4 9 9 C 1.46765 * 124.34569 * 120.02193 * 4 2 1 10 10 H 1.08994 * 110.32174 * 43.95071 * 9 4 2 11 11 C 1.50702 * 110.24695 * 281.98777 * 9 4 2 12 12 O 1.21274 * 120.00083 * 2.49749 * 11 9 4 13 13 N 1.34780 * 120.00016 * 182.50393 * 11 9 4 14 14 C 1.37211 * 119.99769 * 354.27830 * 13 11 9 15 15 H 1.07997 * 120.00134 * 4.51269 * 14 13 11 16 16 C 1.38895 * 119.99845 * 184.51731 * 14 13 11 17 17 N 1.31411 * 119.99954 * 354.60919 * 16 14 13 18 18 Si 1.86800 * 120.00096 * 174.60739 * 16 14 13 19 19 H 1.48500 * 109.46838 * 89.99631 * 18 16 14 20 20 H 1.48502 * 109.47178 * 209.99720 * 18 16 14 21 21 H 1.48499 * 109.47058 * 329.99918 * 18 16 14 22 22 C 1.39422 * 119.99858 * 174.27862 * 13 11 9 23 23 C 1.39064 * 119.69762 * 94.39946 * 22 13 11 24 24 C 1.38384 * 119.10084 * 179.70635 * 23 22 13 25 25 C 1.38831 * 118.49000 * 0.55295 * 24 23 22 26 26 C 1.38148 * 119.30889 * 359.72584 * 25 24 23 27 27 N 1.31878 * 120.85470 * 359.97438 * 26 25 24 28 28 H 1.09010 * 109.47091 * 299.99946 * 1 2 3 29 29 H 1.08997 * 109.47520 * 59.99847 * 1 2 3 30 30 H 1.09001 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47066 * 240.00107 * 2 1 3 32 32 H 1.08998 * 109.47365 * 300.00252 * 3 2 1 33 33 H 1.09010 * 109.46955 * 59.99971 * 3 2 1 34 34 H 1.08999 * 109.47599 * 180.02562 * 3 2 1 35 35 H 1.08995 * 110.48925 * 134.93126 * 7 5 4 36 36 H 1.09004 * 110.48619 * 257.44242 * 7 5 4 37 37 H 1.09004 * 110.96790 * 93.32296 * 8 7 5 38 38 H 1.09000 * 110.96841 * 217.08263 * 8 7 5 39 39 H 0.97004 * 120.00229 * 180.02562 * 17 16 14 40 40 H 1.08006 * 120.44961 * 359.97047 * 23 22 13 41 41 H 1.07998 * 120.75515 * 180.25773 * 24 23 22 42 42 H 1.07994 * 120.34091 * 179.70521 * 25 24 23 43 43 H 1.08000 * 119.57336 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7476 -0.3086 2.4562 6 8 1.0599 0.6428 2.7610 7 6 2.4201 -1.2418 3.4386 8 6 3.4725 -1.9920 2.5896 9 6 2.8659 -1.8885 1.1727 10 1 3.6569 -1.7780 0.4310 11 6 2.0355 -3.1092 0.8704 12 8 0.8495 -2.9949 0.6444 13 7 2.6108 -4.3279 0.8515 14 6 3.9706 -4.4467 0.9906 15 1 4.5718 -3.5716 1.1881 16 6 4.5740 -5.6927 0.8774 17 7 3.8349 -6.7709 0.7430 18 14 6.4361 -5.8357 0.9162 19 1 6.8893 -6.0194 2.3183 20 1 6.8600 -7.0030 0.1019 21 1 7.0393 -4.5983 0.3591 22 6 1.8241 -5.4676 0.6905 23 6 1.6405 -6.0043 -0.5792 24 6 0.8623 -7.1394 -0.7239 25 6 0.2829 -7.6941 0.4092 26 6 0.5032 -7.1045 1.6390 27 7 1.2546 -6.0262 1.7472 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 2.9048 -0.6746 4.2331 36 1 1.6962 -1.9410 3.8574 37 1 4.4401 -1.4924 2.6372 38 1 3.5566 -3.0326 2.9029 39 1 4.2562 -7.6411 0.6643 40 1 2.1024 -5.5439 -1.4401 41 1 0.7053 -7.5810 -1.6969 42 1 -0.3339 -8.5770 0.3301 43 1 0.0542 -7.5321 2.5232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:43 Heat of formation + Delta-G solvation = -8.484474 kcal Electronic energy + Delta-G solvation = -28091.137333 eV Core-core repulsion = 24330.309355 eV Total energy + Delta-G solvation = -3760.827978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63056 -39.41846 -37.79347 -35.77817 -35.00978 -34.56925 -31.87149 -31.28123 -29.78549 -29.54029 -27.40827 -26.84795 -25.23895 -23.03085 -22.46307 -22.05409 -21.70370 -19.62131 -18.68622 -18.02572 -16.78251 -16.25459 -15.63761 -15.34381 -15.19696 -15.01793 -14.77138 -14.32376 -13.94607 -13.71221 -13.59264 -13.25991 -13.14789 -12.77467 -12.55979 -12.53163 -12.35713 -12.21535 -11.80968 -11.65983 -11.50712 -11.31481 -11.16468 -11.10952 -10.94632 -10.83566 -10.70081 -10.59395 -10.52267 -9.86552 -9.22592 -9.09533 -8.79665 -8.59709 -8.26645 -8.02367 -7.90820 -6.38713 -4.20402 2.26424 2.41485 2.96967 2.98772 3.07769 3.10245 3.29218 3.51118 3.86258 4.31948 4.72463 4.84572 4.92792 4.97410 5.21847 5.27675 5.37541 5.42339 5.53183 5.62311 5.67242 5.74845 5.84349 5.88347 5.97456 5.98677 6.02431 6.08717 6.23093 6.24331 6.25990 6.41924 6.44373 6.47784 6.68447 6.74338 7.00454 7.08553 7.10316 7.13509 7.33511 7.55262 7.71079 8.20836 8.60425 8.81010 9.12593 9.18985 9.57159 10.44487 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.005595 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.990428 B = 5003.383356 C = 6063.795868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.160 3.840 3 C -0.164 4.164 4 N -0.587 5.587 5 C 0.525 3.475 6 O -0.544 6.544 7 C -0.157 4.157 8 C -0.122 4.122 9 C 0.132 3.868 10 H 0.105 0.895 11 C 0.464 3.536 12 O -0.575 6.575 13 N -0.407 5.407 14 C -0.343 4.343 15 H 0.113 0.887 16 C 0.038 3.962 17 N -0.859 5.859 18 Si 0.930 3.070 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.465 3.535 23 C -0.125 4.125 24 C -0.079 4.079 25 C -0.206 4.206 26 C 0.110 3.890 27 N -0.492 5.492 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.275 0.725 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 3.943 -1.824 4.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 C -0.223 4.223 4 N -0.320 5.320 5 C 0.314 3.686 6 O -0.422 6.422 7 C -0.197 4.197 8 C -0.160 4.160 9 C 0.024 3.976 10 H 0.123 0.877 11 C 0.252 3.748 12 O -0.457 6.457 13 N -0.127 5.127 14 C -0.469 4.469 15 H 0.131 0.869 16 C -0.168 4.168 17 N -0.496 5.496 18 Si 0.756 3.244 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.192 1.192 22 C 0.238 3.762 23 C -0.148 4.148 24 C -0.105 4.105 25 C -0.227 4.227 26 C -0.048 4.048 27 N -0.204 5.204 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.394 4.691 -1.065 4.826 hybrid contribution 1.064 -1.088 -0.897 1.766 sum 1.458 3.603 -1.962 4.354 Atomic orbital electron populations 1.22161 0.94680 1.03805 1.01741 1.20801 0.94913 0.91936 0.86594 1.22187 1.00948 0.96274 1.02844 1.48079 1.51006 1.26786 1.06105 1.20787 0.79691 0.84262 0.83875 1.90625 1.39867 1.30030 1.81676 1.22369 0.99794 0.99132 0.98383 1.22696 0.97542 1.04076 0.91682 1.21360 0.92054 0.83994 1.00163 0.87706 1.20259 0.88003 0.84091 0.82494 1.90588 1.15882 1.85773 1.53501 1.41210 1.06508 1.01821 1.63135 1.19821 0.79807 0.95971 1.51255 0.86932 1.25277 1.00731 0.94872 0.95927 1.69573 1.35093 0.98787 1.46100 0.85853 0.81574 0.78390 0.78540 1.20097 1.20716 1.19190 1.17350 0.85838 0.85239 0.87777 1.21515 0.98804 0.96820 0.97636 1.21040 0.96434 0.95157 0.97891 1.21648 1.04596 1.02046 0.94371 1.22054 0.94802 0.91871 0.96061 1.67108 1.08907 1.10607 1.33794 0.91712 0.92650 0.90576 0.89928 0.91846 0.91208 0.92735 0.88457 0.87964 0.89715 0.86810 0.91261 0.87006 0.86779 0.86809 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.19 37.15 0.34 -2.44 16 2 C 0.16 2.55 3.28 -67.94 -0.22 2.33 16 3 C -0.16 -2.22 9.20 37.16 0.34 -1.88 16 4 N -0.59 -10.29 2.04 -158.68 -0.32 -10.62 16 5 C 0.53 9.64 7.41 -10.87 -0.08 9.56 16 6 O -0.54 -11.17 15.12 5.56 0.08 -11.08 16 7 C -0.16 -2.46 6.85 -26.74 -0.18 -2.65 16 8 C -0.12 -1.89 5.45 -25.10 -0.14 -2.02 16 9 C 0.13 2.33 2.53 -68.16 -0.17 2.16 16 10 H 0.11 1.68 7.80 -51.93 -0.40 1.27 16 11 C 0.46 10.24 6.99 -10.98 -0.08 10.17 16 12 O -0.57 -14.26 14.96 5.56 0.08 -14.17 16 13 N -0.41 -9.49 2.69 -60.71 -0.16 -9.65 16 14 C -0.34 -7.63 8.04 -14.90 -0.12 -7.75 16 15 H 0.11 2.22 5.39 -52.49 -0.28 1.94 16 16 C 0.04 0.86 5.44 -17.49 -0.10 0.77 16 17 N -0.86 -20.87 9.58 55.49 0.53 -20.34 16 18 Si 0.93 17.82 29.56 -169.99 -5.02 12.79 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 22 C 0.46 11.25 3.04 -154.64 -0.47 10.78 16 23 C -0.13 -2.81 8.63 -39.22 -0.34 -3.15 16 24 C -0.08 -1.53 10.17 -39.31 -0.40 -1.93 16 25 C -0.21 -3.83 10.11 -39.39 -0.40 -4.23 16 26 C 0.11 2.26 11.18 -17.56 -0.20 2.06 16 27 N -0.49 -11.91 10.28 -12.34 -0.13 -12.03 16 28 H 0.06 1.18 6.77 -51.92 -0.35 0.82 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.49 6.77 -51.93 -0.35 1.14 16 31 H 0.08 1.26 8.07 -51.93 -0.42 0.85 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.07 6.81 -51.92 -0.35 0.72 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.11 1.98 6.36 -51.93 -0.33 1.65 16 39 H 0.28 6.52 8.31 -40.82 -0.34 6.19 16 40 H 0.11 2.45 8.06 -52.48 -0.42 2.03 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -30.03 350.41 -7.72 -37.75 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.86 Total: 10.29 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: -2.21 Total: 11.78 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.08 Total: -52.64 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.17 Total: -25.26 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.02 Total: 12.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.03 -7.72 -37.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.267 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds