Wall clock time and date at job start Tue Mar 31 2020 11:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47399 * 2 1 4 4 N 1.46502 * 109.47342 * 119.99820 * 2 1 3 5 5 C 1.34414 * 124.35215 * 300.02856 * 4 2 1 6 6 O 1.21279 * 124.94163 * 0.66982 * 5 4 2 7 7 C 1.51276 * 110.11765 * 180.40391 * 5 4 2 8 8 C 1.54631 * 104.19558 * 16.24889 * 7 5 4 9 9 C 1.46765 * 124.34569 * 120.02193 * 4 2 1 10 10 H 1.08994 * 110.32174 * 43.95071 * 9 4 2 11 11 C 1.50702 * 110.24695 * 281.98777 * 9 4 2 12 12 O 1.21274 * 120.00083 * 2.49749 * 11 9 4 13 13 N 1.34780 * 120.00016 * 182.50393 * 11 9 4 14 14 C 1.37211 * 119.99769 * 354.27830 * 13 11 9 15 15 H 1.07997 * 120.00134 * 4.51269 * 14 13 11 16 16 C 1.38895 * 119.99845 * 184.51731 * 14 13 11 17 17 N 1.31411 * 119.99954 * 354.60919 * 16 14 13 18 18 Si 1.86800 * 120.00096 * 174.60739 * 16 14 13 19 19 H 1.48500 * 109.46838 * 89.99631 * 18 16 14 20 20 H 1.48502 * 109.47178 * 209.99720 * 18 16 14 21 21 H 1.48499 * 109.47058 * 329.99918 * 18 16 14 22 22 C 1.39422 * 119.99858 * 174.27862 * 13 11 9 23 23 C 1.39064 * 119.69762 * 94.39946 * 22 13 11 24 24 C 1.38384 * 119.10084 * 179.70635 * 23 22 13 25 25 C 1.38831 * 118.49000 * 0.55295 * 24 23 22 26 26 C 1.38148 * 119.30889 * 359.72584 * 25 24 23 27 27 N 1.31878 * 120.85470 * 359.97438 * 26 25 24 28 28 H 1.09010 * 109.47091 * 299.99946 * 1 2 3 29 29 H 1.08997 * 109.47520 * 59.99847 * 1 2 3 30 30 H 1.09001 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47066 * 240.00107 * 2 1 3 32 32 H 1.08998 * 109.47365 * 300.00252 * 3 2 1 33 33 H 1.09010 * 109.46955 * 59.99971 * 3 2 1 34 34 H 1.08999 * 109.47599 * 180.02562 * 3 2 1 35 35 H 1.08995 * 110.48925 * 134.93126 * 7 5 4 36 36 H 1.09004 * 110.48619 * 257.44242 * 7 5 4 37 37 H 1.09004 * 110.96790 * 93.32296 * 8 7 5 38 38 H 1.09000 * 110.96841 * 217.08263 * 8 7 5 39 39 H 0.97004 * 120.00229 * 180.02562 * 17 16 14 40 40 H 1.08006 * 120.44961 * 359.97047 * 23 22 13 41 41 H 1.07998 * 120.75515 * 180.25773 * 24 23 22 42 42 H 1.07994 * 120.34091 * 179.70521 * 25 24 23 43 43 H 1.08000 * 119.57336 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7476 -0.3086 2.4562 6 8 1.0599 0.6428 2.7610 7 6 2.4201 -1.2418 3.4386 8 6 3.4725 -1.9920 2.5896 9 6 2.8659 -1.8885 1.1727 10 1 3.6569 -1.7780 0.4310 11 6 2.0355 -3.1092 0.8704 12 8 0.8495 -2.9949 0.6444 13 7 2.6108 -4.3279 0.8515 14 6 3.9706 -4.4467 0.9906 15 1 4.5718 -3.5716 1.1881 16 6 4.5740 -5.6927 0.8774 17 7 3.8349 -6.7709 0.7430 18 14 6.4361 -5.8357 0.9162 19 1 6.8893 -6.0194 2.3183 20 1 6.8600 -7.0030 0.1019 21 1 7.0393 -4.5983 0.3591 22 6 1.8241 -5.4676 0.6905 23 6 1.6405 -6.0043 -0.5792 24 6 0.8623 -7.1394 -0.7239 25 6 0.2829 -7.6941 0.4092 26 6 0.5032 -7.1045 1.6390 27 7 1.2546 -6.0262 1.7472 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 2.9048 -0.6746 4.2331 36 1 1.6962 -1.9410 3.8574 37 1 4.4401 -1.4924 2.6372 38 1 3.5566 -3.0326 2.9029 39 1 4.2562 -7.6411 0.6643 40 1 2.1024 -5.5439 -1.4401 41 1 0.7053 -7.5810 -1.6969 42 1 -0.3339 -8.5770 0.3301 43 1 0.0542 -7.5321 2.5232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:42 Heat of formation + Delta-G solvation = -25.907342 kcal Electronic energy + Delta-G solvation = -28091.892845 eV Core-core repulsion = 24330.309355 eV Total energy + Delta-G solvation = -3761.583490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10942 -40.99175 -39.41252 -37.25537 -36.71153 -35.86986 -33.57692 -32.91243 -31.30014 -30.90875 -28.86694 -28.07462 -26.95086 -24.54869 -24.07494 -23.37890 -23.12825 -21.23633 -20.25543 -19.47728 -18.34515 -17.63395 -17.26697 -16.96056 -16.72833 -16.54237 -16.23915 -15.86402 -15.39375 -15.19355 -15.04594 -14.66118 -14.57232 -14.25045 -14.07936 -13.91678 -13.85698 -13.74288 -13.26837 -12.96960 -12.92384 -12.78103 -12.65654 -12.40258 -12.31500 -12.24282 -12.11505 -12.01151 -11.97134 -11.53143 -10.78062 -10.59138 -10.43582 -10.27185 -9.88289 -9.58744 -9.53949 -8.06972 -5.94199 0.65922 0.81597 1.44615 1.51483 1.56059 1.62960 1.84461 1.99697 2.29597 2.74982 3.19875 3.29708 3.39263 3.62773 3.90535 3.97010 4.06831 4.15018 4.18712 4.21849 4.27869 4.35076 4.53167 4.54753 4.63850 4.71348 4.76688 4.78538 4.81826 4.92137 4.94074 5.07604 5.09601 5.17730 5.22240 5.37277 5.42571 5.49033 5.53087 5.68808 5.72509 6.09331 6.17016 6.51351 7.09191 7.19352 7.45808 7.53925 7.88545 8.74481 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.005595 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.990428 B = 5003.383356 C = 6063.795868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 C -0.151 4.151 4 N -0.586 5.586 5 C 0.516 3.484 6 O -0.571 6.571 7 C -0.152 4.152 8 C -0.111 4.111 9 C 0.135 3.865 10 H 0.128 0.872 11 C 0.453 3.547 12 O -0.614 6.614 13 N -0.416 5.416 14 C -0.349 4.349 15 H 0.137 0.863 16 C -0.008 4.008 17 N -0.885 5.885 18 Si 0.994 3.006 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.247 1.247 22 C 0.438 3.562 23 C -0.151 4.151 24 C -0.077 4.077 25 C -0.197 4.197 26 C 0.092 3.908 27 N -0.531 5.531 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.267 0.733 40 H 0.103 0.897 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 4.255 -2.304 5.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 C -0.209 4.209 4 N -0.318 5.318 5 C 0.305 3.695 6 O -0.452 6.452 7 C -0.191 4.191 8 C -0.149 4.149 9 C 0.027 3.973 10 H 0.146 0.854 11 C 0.242 3.758 12 O -0.499 6.499 13 N -0.135 5.135 14 C -0.475 4.475 15 H 0.154 0.846 16 C -0.211 4.211 17 N -0.523 5.523 18 Si 0.818 3.182 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.170 1.170 22 C 0.212 3.788 23 C -0.173 4.173 24 C -0.103 4.103 25 C -0.217 4.217 26 C -0.065 4.065 27 N -0.244 5.244 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.167 0.833 42 H 0.175 0.825 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.960 5.012 -1.556 5.602 hybrid contribution 0.440 -1.272 -0.769 1.550 sum 2.401 3.740 -2.325 5.016 Atomic orbital electron populations 1.22058 0.95719 1.01518 1.02182 1.21049 0.94197 0.93627 0.86411 1.22074 1.01731 0.94091 1.03029 1.48228 1.50704 1.26389 1.06446 1.21231 0.79453 0.84206 0.84605 1.90605 1.41061 1.31350 1.82155 1.22382 0.99515 0.98547 0.98697 1.22701 0.99129 1.03333 0.89768 1.21446 0.91697 0.81995 1.02144 0.85438 1.21096 0.88069 0.85011 0.81599 1.90559 1.17731 1.86441 1.55145 1.41501 1.07017 1.02141 1.62826 1.20348 0.79759 0.96854 1.50519 0.84562 1.26132 1.04568 0.94629 0.95724 1.69776 1.36321 0.98830 1.47348 0.84876 0.76822 0.78520 0.77952 1.20394 1.21958 1.17044 1.17672 0.86715 0.86016 0.88427 1.21611 1.00423 0.98398 0.96902 1.21496 0.94957 0.93931 0.99933 1.22077 1.03828 1.02669 0.93126 1.22668 0.94391 0.91293 0.98188 1.67081 1.10456 1.12331 1.34550 0.93639 0.89760 0.94077 0.89203 0.89378 0.93213 0.91305 0.85327 0.89601 0.85608 0.88742 0.92145 0.87883 0.83317 0.82495 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 9.19 71.98 0.66 -4.65 16 2 C 0.15 4.63 3.28 44.99 0.15 4.78 16 3 C -0.15 -3.79 9.20 71.98 0.66 -3.12 16 4 N -0.59 -20.16 2.04 -774.55 -1.58 -21.74 16 5 C 0.52 18.73 7.41 87.90 0.65 19.38 16 6 O -0.57 -23.58 15.12 -3.03 -0.05 -23.62 16 7 C -0.15 -4.60 6.85 30.59 0.21 -4.39 16 8 C -0.11 -3.24 5.45 31.65 0.17 -3.06 16 9 C 0.13 4.61 2.53 44.70 0.11 4.72 16 10 H 0.13 3.79 7.80 -2.39 -0.02 3.77 16 11 C 0.45 20.33 6.99 87.66 0.61 20.95 16 12 O -0.61 -31.64 14.96 -3.01 -0.05 -31.68 16 13 N -0.42 -19.69 2.69 -464.37 -1.25 -20.94 16 14 C -0.35 -15.41 8.04 84.01 0.68 -14.73 16 15 H 0.14 5.11 5.39 -2.91 -0.02 5.09 16 16 C -0.01 -0.38 5.44 84.91 0.46 0.09 16 17 N -0.89 -43.50 9.58 21.65 0.21 -43.29 16 18 Si 0.99 35.78 29.56 68.60 2.03 37.80 16 19 H -0.28 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.29 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.25 -8.00 7.11 99.48 0.71 -7.29 16 22 C 0.44 21.68 3.04 132.90 0.40 22.09 16 23 C -0.15 -6.89 8.63 22.50 0.19 -6.70 16 24 C -0.08 -2.92 10.17 22.45 0.23 -2.69 16 25 C -0.20 -7.00 10.11 22.39 0.23 -6.77 16 26 C 0.09 3.75 11.18 84.66 0.95 4.70 16 27 N -0.53 -26.26 10.28 -192.96 -1.98 -28.24 16 28 H 0.04 1.69 6.77 -2.38 -0.02 1.68 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.66 6.77 -2.39 -0.02 1.65 16 31 H 0.09 2.65 8.07 -2.39 -0.02 2.63 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.46 6.81 -2.38 -0.02 1.45 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 37 H 0.13 2.64 8.14 -2.38 -0.02 2.63 16 38 H 0.09 3.20 6.36 -2.39 -0.02 3.18 16 39 H 0.27 12.88 8.31 -92.70 -0.77 12.11 16 40 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 43 H 0.16 5.41 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -68.62 350.41 4.72 -63.90 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: 1.02 Total: 37.24 kcal Atomic # 6 Polarization: 24.21 SS G_CDS: 6.37 Total: 30.58 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.60 Total: -114.21 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.09 Total: -55.31 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.80 kcal Total: -68.62 4.72 -63.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.990 kcal (2) G-P(sol) polarization free energy of solvation -68.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds