Wall clock time and date at job start Tue Mar 31 2020 12:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47557 * 2 1 4 4 C 1.52999 * 109.47343 * 239.99128 * 2 1 3 5 5 C 1.52996 * 109.47067 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47149 * 60.00320 * 5 4 2 7 7 C 1.52998 * 109.47219 * 299.99662 * 6 5 4 8 8 C 1.53005 * 109.46589 * 119.99306 * 2 1 3 9 9 H 1.08991 * 109.47288 * 299.99958 * 8 2 1 10 10 N 1.46498 * 109.46965 * 60.00478 * 8 2 1 11 11 C 1.46497 * 120.00183 * 6.04118 * 10 8 2 12 12 C 1.34776 * 119.99655 * 186.04854 * 10 8 2 13 13 O 1.21277 * 120.00630 * 359.97438 * 12 10 8 14 14 C 1.50706 * 119.99741 * 179.97438 * 12 10 8 15 15 S 1.81403 * 109.46864 * 179.97438 * 14 12 10 16 16 O 1.42103 * 108.58091 * 294.48617 * 15 14 12 17 17 O 1.42102 * 108.57712 * 65.51568 * 15 14 12 18 18 C 1.81406 * 101.92153 * 179.97438 * 15 14 12 19 19 C 1.50693 * 109.47337 * 180.02562 * 18 15 14 20 20 H 1.08006 * 120.00116 * 359.97438 * 19 18 15 21 21 C 1.37877 * 119.99972 * 180.02562 * 19 18 15 22 22 N 1.31516 * 119.99955 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00114 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46742 * 90.00787 * 23 21 19 25 25 H 1.48494 * 109.47267 * 210.00273 * 23 21 19 26 26 H 1.48494 * 109.46920 * 330.00673 * 23 21 19 27 27 H 1.09003 * 109.47025 * 324.83108 * 1 2 3 28 28 H 1.09000 * 109.46837 * 84.82582 * 1 2 3 29 29 H 1.08998 * 109.47552 * 204.83180 * 1 2 3 30 30 H 1.08999 * 109.46838 * 60.00715 * 4 2 1 31 31 H 1.09000 * 109.47059 * 300.00320 * 4 2 1 32 32 H 1.09000 * 109.47283 * 299.99988 * 5 4 2 33 33 H 1.09000 * 109.47098 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.47008 * 60.00126 * 6 5 4 35 35 H 1.09005 * 109.47169 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47182 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47510 * 300.00157 * 7 6 5 38 38 H 1.09004 * 109.47014 * 95.65069 * 11 10 8 39 39 H 1.09002 * 109.47327 * 215.64450 * 11 10 8 40 40 H 1.08997 * 109.47352 * 335.64863 * 11 10 8 41 41 H 1.09000 * 109.47180 * 299.99787 * 14 12 10 42 42 H 1.09002 * 109.47183 * 60.00242 * 14 12 10 43 43 H 1.09003 * 109.46961 * 300.00295 * 18 15 14 44 44 H 1.08999 * 109.46926 * 59.99681 * 18 15 14 45 45 H 0.96995 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0006 7 6 3.5695 -0.7221 1.2497 8 6 2.0399 -0.7211 1.2494 9 1 1.6766 -0.2072 2.1392 10 7 1.5516 -2.1023 1.2494 11 6 0.8218 -2.6213 0.0900 12 6 1.7736 -2.8955 2.3163 13 8 2.3780 -2.4660 3.2760 14 6 1.2708 -4.3162 2.3165 15 16 1.7244 -5.1178 3.8793 16 8 3.1404 -5.2207 3.9411 17 8 1.0288 -4.4731 4.9375 18 6 1.0324 -6.7806 3.6623 19 6 1.3178 -7.6076 4.8893 20 1 1.8616 -7.1762 5.7168 21 6 0.8857 -8.9152 4.9551 22 7 1.1344 -9.6368 6.0261 23 14 -0.0540 -9.6616 3.5236 24 1 0.9028 -10.2865 2.5754 25 1 -0.9926 -10.6939 4.0320 26 1 -0.8193 -8.5976 2.8254 27 1 -0.3633 0.8401 0.5919 28 1 -0.3633 0.0927 -1.0235 29 1 -0.3634 -0.9326 0.4316 30 1 1.6768 -0.2076 -2.1391 31 1 1.6767 -1.7491 -1.2490 32 1 3.9337 0.3056 -1.2486 33 1 3.9334 -1.2355 -2.1388 34 1 3.7158 -2.4710 0.0004 35 1 5.1695 -1.4442 0.0006 36 1 3.9320 -1.2363 2.1398 37 1 3.9331 0.3055 1.2499 38 1 1.5122 -3.1511 -0.5665 39 1 0.0436 -3.3060 0.4272 40 1 0.3668 -1.7933 -0.4534 41 1 0.1861 -4.3178 2.2085 42 1 1.7195 -4.8606 1.4857 43 1 -0.0453 -6.7092 3.5152 44 1 1.4874 -7.2526 2.7916 45 1 0.8301 -10.5566 6.0726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:52 Heat of formation + Delta-G solvation = -77.152217 kcal Electronic energy + Delta-G solvation = -26203.134760 eV Core-core repulsion = 22542.480326 eV Total energy + Delta-G solvation = -3660.654434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24146 -38.53114 -36.04140 -35.07199 -34.80245 -33.24221 -33.06905 -31.57673 -29.96146 -29.44620 -27.38904 -26.05015 -23.28370 -22.83096 -21.62974 -20.77115 -19.11681 -18.00070 -17.32085 -17.25099 -16.48387 -16.05838 -15.65468 -15.38984 -15.10267 -14.97928 -14.78592 -14.24050 -14.09168 -13.98440 -13.83503 -13.32652 -12.85166 -12.70061 -12.55891 -12.52939 -12.45632 -12.39565 -12.15089 -11.81927 -11.63447 -11.59291 -11.13285 -11.08410 -10.94541 -10.87170 -10.55073 -10.52742 -10.47498 -10.30974 -10.26577 -9.87966 -9.74690 -9.32438 -8.82759 -8.81695 -6.29411 -4.37853 0.72059 2.47934 2.76062 3.13032 3.17800 3.22034 3.67223 4.09674 4.21120 4.32119 4.37720 4.42423 4.52842 4.75102 4.78952 4.83159 4.92511 4.95114 5.02005 5.09411 5.15846 5.17177 5.22760 5.25811 5.34696 5.36914 5.38113 5.47307 5.55031 5.66086 5.70848 5.78801 5.88896 5.95742 5.99725 6.05261 6.14286 6.19586 6.27242 6.44291 7.10461 7.19767 7.96652 8.04805 8.65919 9.24305 10.81888 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.003515 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.462011 B = 7963.053068 C = 8267.650022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 H 0.086 0.914 4 C -0.154 4.154 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.138 4.138 8 C 0.154 3.846 9 H 0.081 0.919 10 N -0.600 5.600 11 C 0.035 3.965 12 C 0.545 3.455 13 O -0.521 6.521 14 C -0.678 4.678 15 S 2.445 3.555 16 O -0.933 6.933 17 O -0.933 6.933 18 C -0.461 4.461 19 C -0.529 4.529 20 H 0.089 0.911 21 C 0.087 3.913 22 N -0.880 5.880 23 Si 0.882 3.118 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.264 1.264 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 17.664 -20.231 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.190 4.190 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.177 4.177 8 C 0.052 3.948 9 H 0.099 0.901 10 N -0.334 5.334 11 C -0.107 4.107 12 C 0.332 3.668 13 O -0.397 6.397 14 C -0.801 4.801 15 S 2.623 3.377 16 O -0.930 6.930 17 O -0.930 6.930 18 C -0.594 4.594 19 C -0.567 4.567 20 H 0.107 0.893 21 C -0.119 4.119 22 N -0.516 5.516 23 Si 0.708 3.292 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.188 1.188 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.398 18.158 -18.973 26.299 hybrid contribution -0.988 -0.870 -1.616 2.085 sum -2.386 17.288 -20.589 26.990 Atomic orbital electron populations 1.22312 0.94985 1.03136 1.02300 1.21381 0.95806 1.00010 0.94345 0.89605 1.22539 0.96390 1.03333 0.96767 1.21514 0.95426 1.00614 0.97886 1.21484 1.00265 0.99700 0.94133 1.21954 0.94650 1.01449 0.99607 1.21066 0.94325 0.81097 0.98351 0.90053 1.47673 1.56453 1.12448 1.16854 1.22952 0.96866 1.01533 0.89320 1.19307 0.79313 0.85663 0.82517 1.90835 1.40465 1.74899 1.33529 1.31198 1.12952 1.05426 1.30512 1.07817 0.76327 0.78286 0.75263 1.93488 1.28314 1.86559 1.84650 1.93488 1.75710 1.75079 1.48750 1.28112 1.07745 1.16546 1.07027 1.20108 1.39909 0.97175 0.99548 0.89263 1.24898 0.94745 0.96266 0.96018 1.69866 1.44675 1.09291 1.27726 0.86739 0.80344 0.79472 0.82633 1.19590 1.20582 1.18806 0.92296 0.91958 0.90569 0.91895 0.88639 0.92248 0.92129 0.91976 0.91969 0.89787 0.91082 0.92043 0.91221 0.86598 0.82862 0.82941 0.89745 0.90180 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 8.18 37.16 0.30 -0.76 16 2 C -0.10 -0.69 2.47 -90.62 -0.22 -0.91 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -0.98 4.58 -26.73 -0.12 -1.11 16 5 C -0.12 -0.86 5.92 -26.73 -0.16 -1.01 16 6 C -0.12 -1.15 5.76 -26.73 -0.15 -1.30 16 7 C -0.14 -1.53 5.32 -26.75 -0.14 -1.67 16 8 C 0.15 1.61 2.24 -67.95 -0.15 1.46 16 9 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 10 N -0.60 -6.84 2.00 -174.00 -0.35 -7.18 16 11 C 0.04 0.27 6.79 59.85 0.41 0.67 16 12 C 0.55 8.58 7.43 -10.98 -0.08 8.50 16 13 O -0.52 -10.45 14.15 2.55 0.04 -10.42 16 14 C -0.68 -9.56 4.92 36.01 0.18 -9.38 16 15 S 2.44 51.61 3.88 -107.50 -0.42 51.19 16 16 O -0.93 -22.90 17.95 -59.52 -1.07 -23.97 16 17 O -0.93 -22.97 17.94 -59.54 -1.07 -24.04 16 18 C -0.46 -10.07 4.63 36.00 0.17 -9.90 16 19 C -0.53 -14.93 9.68 -34.44 -0.33 -15.26 16 20 H 0.09 2.77 7.96 -52.48 -0.42 2.36 16 21 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 22 N -0.88 -26.29 13.96 55.43 0.77 -25.52 16 23 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.30 7.89 -51.93 -0.41 -0.11 16 29 H 0.08 0.52 5.07 -51.93 -0.26 0.26 16 30 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.10 0.59 3.32 -51.98 -0.17 0.42 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.21 6.62 -51.93 -0.34 0.86 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.41 6.95 -51.93 -0.36 0.05 16 39 H 0.07 0.46 6.68 -51.93 -0.35 0.11 16 40 H 0.12 0.67 2.65 -51.93 -0.14 0.53 16 41 H 0.15 1.59 7.41 -51.92 -0.39 1.20 16 42 H 0.15 1.59 8.11 -51.92 -0.42 1.17 16 43 H 0.08 1.63 7.20 -51.92 -0.37 1.26 16 44 H 0.08 1.53 7.57 -51.92 -0.39 1.13 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -37.71 349.83 -8.86 -46.58 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.96 Total: 1.08 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -0.41 Total: -28.31 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.43 Total: -32.71 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -2.10 Total: -58.42 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 16 Polarization: 51.61 SS G_CDS: -0.42 Total: 51.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.71 -8.86 -46.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.576 kcal (2) G-P(sol) polarization free energy of solvation -37.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds