Wall clock time and date at job start Tue Mar 31 2020 12:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47557 * 2 1 4 4 C 1.52999 * 109.47343 * 239.99128 * 2 1 3 5 5 C 1.52996 * 109.47067 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47149 * 60.00320 * 5 4 2 7 7 C 1.52998 * 109.47219 * 299.99662 * 6 5 4 8 8 C 1.53005 * 109.46589 * 119.99306 * 2 1 3 9 9 H 1.08991 * 109.47288 * 299.99958 * 8 2 1 10 10 N 1.46498 * 109.46965 * 60.00478 * 8 2 1 11 11 C 1.46497 * 120.00183 * 6.04118 * 10 8 2 12 12 C 1.34776 * 119.99655 * 186.04854 * 10 8 2 13 13 O 1.21277 * 120.00630 * 359.97438 * 12 10 8 14 14 C 1.50706 * 119.99741 * 179.97438 * 12 10 8 15 15 S 1.81403 * 109.46864 * 179.97438 * 14 12 10 16 16 O 1.42103 * 108.58091 * 294.48617 * 15 14 12 17 17 O 1.42102 * 108.57712 * 65.51568 * 15 14 12 18 18 C 1.81406 * 101.92153 * 179.97438 * 15 14 12 19 19 C 1.50693 * 109.47337 * 180.02562 * 18 15 14 20 20 H 1.08006 * 120.00116 * 359.97438 * 19 18 15 21 21 C 1.37877 * 119.99972 * 180.02562 * 19 18 15 22 22 N 1.31516 * 119.99955 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00114 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46742 * 90.00787 * 23 21 19 25 25 H 1.48494 * 109.47267 * 210.00273 * 23 21 19 26 26 H 1.48494 * 109.46920 * 330.00673 * 23 21 19 27 27 H 1.09003 * 109.47025 * 324.83108 * 1 2 3 28 28 H 1.09000 * 109.46837 * 84.82582 * 1 2 3 29 29 H 1.08998 * 109.47552 * 204.83180 * 1 2 3 30 30 H 1.08999 * 109.46838 * 60.00715 * 4 2 1 31 31 H 1.09000 * 109.47059 * 300.00320 * 4 2 1 32 32 H 1.09000 * 109.47283 * 299.99988 * 5 4 2 33 33 H 1.09000 * 109.47098 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.47008 * 60.00126 * 6 5 4 35 35 H 1.09005 * 109.47169 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47182 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47510 * 300.00157 * 7 6 5 38 38 H 1.09004 * 109.47014 * 95.65069 * 11 10 8 39 39 H 1.09002 * 109.47327 * 215.64450 * 11 10 8 40 40 H 1.08997 * 109.47352 * 335.64863 * 11 10 8 41 41 H 1.09000 * 109.47180 * 299.99787 * 14 12 10 42 42 H 1.09002 * 109.47183 * 60.00242 * 14 12 10 43 43 H 1.09003 * 109.46961 * 300.00295 * 18 15 14 44 44 H 1.08999 * 109.46926 * 59.99681 * 18 15 14 45 45 H 0.96995 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0006 7 6 3.5695 -0.7221 1.2497 8 6 2.0399 -0.7211 1.2494 9 1 1.6766 -0.2072 2.1392 10 7 1.5516 -2.1023 1.2494 11 6 0.8218 -2.6213 0.0900 12 6 1.7736 -2.8955 2.3163 13 8 2.3780 -2.4660 3.2760 14 6 1.2708 -4.3162 2.3165 15 16 1.7244 -5.1178 3.8793 16 8 3.1404 -5.2207 3.9411 17 8 1.0288 -4.4731 4.9375 18 6 1.0324 -6.7806 3.6623 19 6 1.3178 -7.6076 4.8893 20 1 1.8616 -7.1762 5.7168 21 6 0.8857 -8.9152 4.9551 22 7 1.1344 -9.6368 6.0261 23 14 -0.0540 -9.6616 3.5236 24 1 0.9028 -10.2865 2.5754 25 1 -0.9926 -10.6939 4.0320 26 1 -0.8193 -8.5976 2.8254 27 1 -0.3633 0.8401 0.5919 28 1 -0.3633 0.0927 -1.0235 29 1 -0.3634 -0.9326 0.4316 30 1 1.6768 -0.2076 -2.1391 31 1 1.6767 -1.7491 -1.2490 32 1 3.9337 0.3056 -1.2486 33 1 3.9334 -1.2355 -2.1388 34 1 3.7158 -2.4710 0.0004 35 1 5.1695 -1.4442 0.0006 36 1 3.9320 -1.2363 2.1398 37 1 3.9331 0.3055 1.2499 38 1 1.5122 -3.1511 -0.5665 39 1 0.0436 -3.3060 0.4272 40 1 0.3668 -1.7933 -0.4534 41 1 0.1861 -4.3178 2.2085 42 1 1.7195 -4.8606 1.4857 43 1 -0.0453 -6.7092 3.5152 44 1 1.4874 -7.2526 2.7916 45 1 0.8301 -10.5566 6.0726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:51 Heat of formation + Delta-G solvation = -106.600531 kcal Electronic energy + Delta-G solvation = -26204.411735 eV Core-core repulsion = 22542.480326 eV Total energy + Delta-G solvation = -3661.931409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09497 -39.56464 -37.82784 -36.82187 -35.70127 -35.28302 -33.77666 -32.44108 -31.77049 -30.57727 -28.02583 -26.72216 -25.13253 -23.78855 -22.26980 -21.57291 -20.10006 -19.65421 -19.27135 -18.38020 -17.52577 -17.35407 -17.07584 -16.69721 -16.40484 -16.05438 -15.86447 -15.53888 -15.05835 -14.81408 -14.67376 -14.63573 -14.22222 -14.09909 -13.70709 -13.47599 -13.38438 -13.17399 -13.06218 -12.95409 -12.89505 -12.81750 -12.55840 -12.39594 -12.29008 -12.25663 -11.84144 -11.79014 -11.62161 -11.45737 -11.16859 -11.08947 -10.95177 -10.88689 -10.55046 -9.72732 -8.39880 -6.57859 -0.90185 1.33315 1.37849 1.43897 1.54654 1.78018 2.15617 2.33588 2.90786 2.92313 3.23939 3.36284 3.66190 3.75521 3.81108 3.95530 4.12505 4.14139 4.21732 4.33353 4.41274 4.44752 4.48881 4.52493 4.54912 4.61546 4.63560 4.74646 4.79039 4.96738 5.02252 5.06720 5.13257 5.15687 5.26910 5.27507 5.32735 5.34301 5.40058 5.50918 5.67539 5.86844 6.15501 6.48180 6.88180 7.09226 8.76565 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.003515 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.462011 B = 7963.053068 C = 8267.650022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 H 0.092 0.908 4 C -0.152 4.152 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.140 4.140 8 C 0.148 3.852 9 H 0.058 0.942 10 N -0.584 5.584 11 C 0.014 3.986 12 C 0.527 3.473 13 O -0.582 6.582 14 C -0.640 4.640 15 S 2.431 3.569 16 O -0.989 6.989 17 O -0.989 6.989 18 C -0.465 4.465 19 C -0.559 4.559 20 H 0.026 0.974 21 C 0.015 3.985 22 N -0.941 5.941 23 Si 0.960 3.040 24 H -0.254 1.254 25 H -0.282 1.282 26 H -0.213 1.213 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.207 0.793 42 H 0.204 0.796 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 18.122 -26.465 32.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.107 4.107 3 H 0.111 0.889 4 C -0.188 4.188 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.178 4.178 8 C 0.045 3.955 9 H 0.076 0.924 10 N -0.315 5.315 11 C -0.126 4.126 12 C 0.314 3.686 13 O -0.463 6.463 14 C -0.771 4.771 15 S 2.618 3.382 16 O -0.987 6.987 17 O -0.986 6.986 18 C -0.598 4.598 19 C -0.597 4.597 20 H 0.044 0.956 21 C -0.186 4.186 22 N -0.579 5.579 23 Si 0.779 3.221 24 H -0.179 1.179 25 H -0.208 1.208 26 H -0.135 1.135 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.156 0.844 41 H 0.224 0.776 42 H 0.221 0.779 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.276 18.617 -25.184 31.609 hybrid contribution -0.021 -0.879 0.333 0.940 sum -4.298 17.738 -24.852 30.834 Atomic orbital electron populations 1.22320 0.93820 1.02858 1.03709 1.21361 0.96659 0.99891 0.92779 0.88950 1.22575 0.95359 1.03995 0.96863 1.21490 0.96380 1.00556 0.96545 1.21481 0.99993 0.99309 0.94722 1.21919 0.95519 1.01755 0.98599 1.21177 0.93769 0.80996 0.99560 0.92357 1.47730 1.55093 1.12123 1.16584 1.23466 0.97668 1.03210 0.88239 1.19686 0.79302 0.86607 0.83002 1.90836 1.43359 1.76041 1.36070 1.30730 1.16644 1.04056 1.25625 1.07444 0.75006 0.78342 0.77413 1.93419 1.31267 1.87239 1.86735 1.93418 1.76023 1.75748 1.53450 1.28069 1.10465 1.16061 1.05195 1.20399 1.39811 0.98729 1.00777 0.95588 1.26252 0.95789 0.96518 0.99996 1.70059 1.46677 1.10031 1.31129 0.85541 0.79036 0.79465 0.78080 1.17860 1.20771 1.13509 0.92760 0.89575 0.90839 0.89605 0.87819 0.91824 0.90950 0.92902 0.92603 0.94248 0.89989 0.90019 0.88987 0.84394 0.77612 0.77905 0.85773 0.86020 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 8.18 71.98 0.59 -0.82 16 2 C -0.09 -0.96 2.47 -10.79 -0.03 -0.99 16 3 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.15 -1.21 4.58 30.59 0.14 -1.07 16 5 C -0.11 -1.26 5.92 30.59 0.18 -1.08 16 6 C -0.12 -2.13 5.76 30.59 0.18 -1.95 16 7 C -0.14 -3.13 5.32 30.58 0.16 -2.97 16 8 C 0.15 2.93 2.24 44.98 0.10 3.03 16 9 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 10 N -0.58 -11.74 2.00 -822.82 -1.65 -13.39 16 11 C 0.01 0.13 6.79 127.77 0.87 1.00 16 12 C 0.53 15.91 7.43 87.66 0.65 16.56 16 13 O -0.58 -24.54 14.15 -0.14 0.00 -24.54 16 14 C -0.64 -15.56 4.92 71.24 0.35 -15.21 16 15 S 2.43 103.87 3.88 -56.49 -0.22 103.65 16 16 O -0.99 -51.39 17.95 -125.76 -2.26 -53.65 16 17 O -0.99 -51.29 17.94 -125.74 -2.26 -53.55 16 18 C -0.46 -19.36 4.63 71.23 0.33 -19.03 16 19 C -0.56 -32.69 9.68 25.60 0.25 -32.44 16 20 H 0.03 1.77 7.96 -2.91 -0.02 1.75 16 21 C 0.01 0.83 5.47 84.65 0.46 1.29 16 22 N -0.94 -58.90 13.96 21.45 0.30 -58.60 16 23 Si 0.96 39.05 27.47 68.60 1.88 40.93 16 24 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 26 H -0.21 -6.94 6.54 99.48 0.65 -6.29 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.09 0.35 7.89 -2.39 -0.02 0.33 16 29 H 0.07 0.67 5.07 -2.39 -0.01 0.66 16 30 H 0.09 0.39 8.12 -2.39 -0.02 0.37 16 31 H 0.10 0.67 3.32 -2.44 -0.01 0.67 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 1.04 7.50 -2.39 -0.02 1.02 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.04 1.23 6.62 -2.39 -0.02 1.22 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 0.55 6.95 -2.38 -0.02 0.53 16 39 H 0.09 0.53 6.68 -2.39 -0.02 0.52 16 40 H 0.14 0.77 2.65 -2.39 -0.01 0.76 16 41 H 0.21 2.87 7.41 -2.39 -0.02 2.86 16 42 H 0.20 2.94 8.11 -2.39 -0.02 2.92 16 43 H 0.12 4.20 7.20 -2.39 -0.02 4.19 16 44 H 0.12 4.09 7.57 -2.39 -0.02 4.07 16 45 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -96.28 349.83 0.97 -95.32 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.93 Total: 17.49 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 4.23 Total: -53.67 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.35 Total: -71.99 kcal Atomic # 8 Polarization: -127.22 SS G_CDS: -4.52 Total: -131.73 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.88 Total: 40.93 kcal Atomic # 16 Polarization: 103.87 SS G_CDS: -0.22 Total: 103.65 kcal Total: -96.28 0.97 -95.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.285 kcal (2) G-P(sol) polarization free energy of solvation -96.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds