Wall clock time and date at job start Tue Mar 31 2020 12:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.47195 * 2 1 4 4 C 1.53000 * 109.46901 * 120.00385 * 2 1 3 5 5 C 1.53002 * 109.46901 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.46898 * 299.99620 * 5 4 2 7 7 C 1.53001 * 109.47229 * 59.99807 * 6 5 4 8 8 C 1.52998 * 109.47228 * 300.00458 * 7 6 5 9 9 H 1.09002 * 109.46906 * 299.99828 * 8 7 6 10 10 N 1.46498 * 109.47304 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99990 * 300.00317 * 10 8 7 12 12 C 1.34777 * 120.00124 * 119.99330 * 10 8 7 13 13 O 1.21279 * 119.99953 * 0.02562 * 12 10 8 14 14 C 1.50702 * 120.00107 * 180.02562 * 12 10 8 15 15 S 1.81398 * 109.47325 * 180.02562 * 14 12 10 16 16 O 1.42105 * 108.57879 * 65.51020 * 15 14 12 17 17 O 1.42097 * 108.57629 * 294.48781 * 15 14 12 18 18 C 1.81391 * 101.92304 * 179.97438 * 15 14 12 19 19 C 1.50695 * 109.47313 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00083 * 359.97438 * 19 18 15 21 21 C 1.37879 * 120.00122 * 180.02562 * 19 18 15 22 22 N 1.31516 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47163 * 60.00084 * 23 21 19 25 25 H 1.48499 * 109.47051 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47293 * 299.99642 * 23 21 19 27 27 H 1.09002 * 109.47288 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46757 * 299.99743 * 1 2 3 29 29 H 1.09001 * 109.47582 * 59.99658 * 1 2 3 30 30 H 1.08997 * 109.47275 * 299.99088 * 4 2 1 31 31 H 1.09002 * 109.47668 * 59.99598 * 4 2 1 32 32 H 1.08994 * 109.47563 * 59.99320 * 5 4 2 33 33 H 1.08995 * 109.46936 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.46918 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.46943 * 299.99956 * 6 5 4 36 36 H 1.08998 * 109.47131 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.46523 * 60.00206 * 7 6 5 38 38 H 1.09000 * 109.46685 * 269.99736 * 11 10 8 39 39 H 1.09001 * 109.47148 * 29.99268 * 11 10 8 40 40 H 1.09001 * 109.47678 * 150.00056 * 11 10 8 41 41 H 1.08998 * 109.47154 * 60.00299 * 14 12 10 42 42 H 1.09006 * 109.47117 * 300.00589 * 14 12 10 43 43 H 1.09003 * 109.47583 * 300.00163 * 18 15 14 44 44 H 1.09003 * 109.47643 * 59.99714 * 18 15 14 45 45 H 0.97002 * 119.99619 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4436 -0.0004 7 6 3.5694 -0.7224 -1.2497 8 6 2.0394 -0.7217 -1.2493 9 1 1.6756 -1.7492 -1.2490 10 7 1.5510 -0.0306 -2.4451 11 6 1.9055 1.3719 -2.6767 12 6 0.7757 -0.6851 -3.3323 13 8 0.4820 -1.8460 -3.1404 14 6 0.2738 0.0257 -4.5627 15 16 -0.7354 -1.1135 -5.5498 16 8 -1.9002 -1.4463 -4.8070 17 8 0.1006 -2.1560 -6.0331 18 6 -1.2224 -0.0667 -6.9488 19 6 -2.0850 -0.8617 -7.8947 20 1 -2.3168 -1.8937 -7.6764 21 6 -2.5776 -0.2719 -9.0396 22 7 -2.2950 0.9846 -9.3058 23 14 -3.6463 -1.2576 -10.2124 24 1 -4.8615 -1.7268 -9.4992 25 1 -4.0451 -0.4006 -11.3577 26 1 -2.8826 -2.4288 -10.7124 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6768 -0.2075 2.1392 31 1 1.6766 -1.7490 1.2493 32 1 3.9337 0.3055 1.2486 33 1 3.9333 -1.2362 2.1386 34 1 5.1694 -1.4444 -0.0004 35 1 3.7157 -2.4711 -0.0002 36 1 3.9327 -1.2362 -2.1397 37 1 3.9332 0.3052 -1.2499 38 1 1.1545 2.0166 -2.2200 39 1 2.8797 1.5784 -2.2335 40 1 1.9459 1.5642 -3.7489 41 1 1.1217 0.3677 -5.1561 42 1 -0.3312 0.8826 -4.2660 43 1 -1.7831 0.7929 -6.5816 44 1 -0.3307 0.2781 -7.4724 45 1 -2.6418 1.3996 -10.1110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:00 Heat of formation + Delta-G solvation = -128.481773 kcal Electronic energy + Delta-G solvation = -25658.881052 eV Core-core repulsion = 21996.000801 eV Total energy + Delta-G solvation = -3662.880251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.55518 -38.43004 -35.92308 -35.29628 -34.91141 -33.34192 -32.79251 -31.20116 -29.33362 -28.90452 -27.22147 -26.28583 -23.60609 -22.84058 -21.62157 -20.10385 -19.46090 -17.93919 -17.26241 -16.99864 -16.41520 -16.10592 -15.38256 -15.19306 -14.97522 -14.78365 -14.68127 -14.40618 -14.12866 -13.74402 -13.50613 -13.09436 -13.04864 -12.59646 -12.48795 -12.44943 -12.35196 -12.14220 -12.12964 -11.80784 -11.40918 -11.38865 -11.16744 -11.03111 -10.97968 -10.85652 -10.79822 -10.62614 -10.59779 -10.50588 -10.29549 -9.99408 -9.78547 -9.08371 -8.77487 -8.69791 -6.33264 -4.42262 0.88454 2.52820 2.80927 3.26633 3.27862 3.34034 3.80161 4.17837 4.27596 4.38705 4.44229 4.56195 4.65629 4.78210 4.85265 4.87216 4.96592 5.03603 5.11416 5.13716 5.15732 5.23237 5.29184 5.35528 5.42656 5.47180 5.52234 5.54732 5.68288 5.72515 5.75207 5.82735 5.86176 5.92340 6.02767 6.09145 6.22534 6.39441 6.62294 6.66254 7.15032 7.49284 7.74791 8.01412 8.59670 9.24812 10.78719 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033664 B = 0.002939 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.551973 B = 9524.227037 C = 9552.207695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.129 4.129 8 C 0.141 3.859 9 H 0.105 0.895 10 N -0.606 5.606 11 C 0.072 3.928 12 C 0.546 3.454 13 O -0.526 6.526 14 C -0.675 4.675 15 S 2.422 3.578 16 O -0.942 6.942 17 O -0.943 6.943 18 C -0.406 4.406 19 C -0.529 4.529 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.883 5.883 23 Si 0.906 3.094 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.269 1.269 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.646 4.823 18.818 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.167 4.167 8 C 0.038 3.962 9 H 0.123 0.877 10 N -0.339 5.339 11 C -0.071 4.071 12 C 0.333 3.667 13 O -0.402 6.402 14 C -0.797 4.797 15 S 2.602 3.398 16 O -0.939 6.939 17 O -0.940 6.940 18 C -0.541 4.541 19 C -0.568 4.568 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.520 5.520 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.208 1.208 26 H -0.194 1.194 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.321 3.496 19.055 22.959 hybrid contribution -0.173 0.885 -0.790 1.199 sum 12.147 4.381 18.264 22.368 Atomic orbital electron populations 1.21809 0.94557 1.02545 1.01606 1.21451 0.96356 0.99725 0.94174 0.90977 1.21581 0.95371 1.01095 0.97029 1.21564 0.95674 1.00708 0.97835 1.21501 1.00351 0.99744 0.93905 1.21901 0.94781 1.01260 0.98785 1.21228 0.93494 0.98335 0.83178 0.87734 1.47723 1.50896 1.12603 1.22662 1.21857 1.01119 0.81360 1.02772 1.19439 0.77916 0.86247 0.83082 1.90826 1.57108 1.16216 1.76041 1.31164 1.17897 1.20681 1.09995 1.08527 0.75272 0.78207 0.77784 1.93466 1.46255 1.82017 1.72200 1.93464 1.69108 1.51688 1.79717 1.27607 1.06935 1.09315 1.10233 1.20331 1.32337 0.97930 1.06190 0.90908 1.24926 0.95677 0.95100 0.97357 1.69936 1.43975 1.11602 1.26457 0.86402 0.80750 0.79948 0.79725 1.19356 1.20752 1.19355 0.92255 0.92681 0.92550 0.91612 0.91553 0.92008 0.91859 0.91640 0.91563 0.91304 0.91571 0.92266 0.90757 0.90429 0.82866 0.82918 0.89658 0.89676 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.03 37.16 0.34 -1.23 16 2 C -0.10 -0.89 2.11 -90.62 -0.19 -1.08 16 3 H 0.07 0.58 7.67 -51.94 -0.40 0.18 16 4 C -0.11 -0.87 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 6 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 7 C -0.13 -1.15 5.18 -26.73 -0.14 -1.29 16 8 C 0.14 1.57 1.97 -67.93 -0.13 1.43 16 9 H 0.10 1.44 6.90 -51.93 -0.36 1.09 16 10 N -0.61 -7.45 1.99 -173.93 -0.35 -7.79 16 11 C 0.07 0.61 9.30 59.85 0.56 1.16 16 12 C 0.55 9.11 7.69 -10.98 -0.08 9.02 16 13 O -0.53 -11.03 14.95 2.56 0.04 -10.99 16 14 C -0.67 -10.28 4.84 36.01 0.17 -10.10 16 15 S 2.42 52.96 3.88 -107.50 -0.42 52.54 16 16 O -0.94 -23.62 17.95 -59.52 -1.07 -24.69 16 17 O -0.94 -23.66 17.95 -59.53 -1.07 -24.73 16 18 C -0.41 -9.57 5.56 36.00 0.20 -9.37 16 19 C -0.53 -14.74 9.13 -34.44 -0.31 -15.05 16 20 H 0.07 2.03 7.71 -52.49 -0.40 1.63 16 21 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 22 N -0.88 -24.67 13.29 55.43 0.74 -23.93 16 23 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.66 7.60 -51.93 -0.39 0.27 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.50 6.66 -51.93 -0.35 0.15 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 40 H 0.08 0.59 6.44 -51.93 -0.33 0.26 16 41 H 0.15 1.80 7.40 -51.93 -0.38 1.41 16 42 H 0.15 1.81 8.11 -51.92 -0.42 1.39 16 43 H 0.09 1.92 8.14 -51.92 -0.42 1.49 16 44 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -36.60 369.12 -9.32 -45.92 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.58 Total: -0.47 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -0.15 Total: -27.53 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.39 Total: -31.72 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: -2.10 Total: -60.41 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 52.96 SS G_CDS: -0.42 Total: 52.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.60 -9.32 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.565 kcal (2) G-P(sol) polarization free energy of solvation -36.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds