Wall clock time and date at job start Tue Mar 31 2020 12:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.47195 * 2 1 4 4 C 1.53000 * 109.46901 * 120.00385 * 2 1 3 5 5 C 1.53002 * 109.46901 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.46898 * 299.99620 * 5 4 2 7 7 C 1.53001 * 109.47229 * 59.99807 * 6 5 4 8 8 C 1.52998 * 109.47228 * 300.00458 * 7 6 5 9 9 H 1.09002 * 109.46906 * 299.99828 * 8 7 6 10 10 N 1.46498 * 109.47304 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99990 * 300.00317 * 10 8 7 12 12 C 1.34777 * 120.00124 * 119.99330 * 10 8 7 13 13 O 1.21279 * 119.99953 * 0.02562 * 12 10 8 14 14 C 1.50702 * 120.00107 * 180.02562 * 12 10 8 15 15 S 1.81398 * 109.47325 * 180.02562 * 14 12 10 16 16 O 1.42105 * 108.57879 * 65.51020 * 15 14 12 17 17 O 1.42097 * 108.57629 * 294.48781 * 15 14 12 18 18 C 1.81391 * 101.92304 * 179.97438 * 15 14 12 19 19 C 1.50695 * 109.47313 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00083 * 359.97438 * 19 18 15 21 21 C 1.37879 * 120.00122 * 180.02562 * 19 18 15 22 22 N 1.31516 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47163 * 60.00084 * 23 21 19 25 25 H 1.48499 * 109.47051 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47293 * 299.99642 * 23 21 19 27 27 H 1.09002 * 109.47288 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46757 * 299.99743 * 1 2 3 29 29 H 1.09001 * 109.47582 * 59.99658 * 1 2 3 30 30 H 1.08997 * 109.47275 * 299.99088 * 4 2 1 31 31 H 1.09002 * 109.47668 * 59.99598 * 4 2 1 32 32 H 1.08994 * 109.47563 * 59.99320 * 5 4 2 33 33 H 1.08995 * 109.46936 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.46918 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.46943 * 299.99956 * 6 5 4 36 36 H 1.08998 * 109.47131 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.46523 * 60.00206 * 7 6 5 38 38 H 1.09000 * 109.46685 * 269.99736 * 11 10 8 39 39 H 1.09001 * 109.47148 * 29.99268 * 11 10 8 40 40 H 1.09001 * 109.47678 * 150.00056 * 11 10 8 41 41 H 1.08998 * 109.47154 * 60.00299 * 14 12 10 42 42 H 1.09006 * 109.47117 * 300.00589 * 14 12 10 43 43 H 1.09003 * 109.47583 * 300.00163 * 18 15 14 44 44 H 1.09003 * 109.47643 * 59.99714 * 18 15 14 45 45 H 0.97002 * 119.99619 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4436 -0.0004 7 6 3.5694 -0.7224 -1.2497 8 6 2.0394 -0.7217 -1.2493 9 1 1.6756 -1.7492 -1.2490 10 7 1.5510 -0.0306 -2.4451 11 6 1.9055 1.3719 -2.6767 12 6 0.7757 -0.6851 -3.3323 13 8 0.4820 -1.8460 -3.1404 14 6 0.2738 0.0257 -4.5627 15 16 -0.7354 -1.1135 -5.5498 16 8 -1.9002 -1.4463 -4.8070 17 8 0.1006 -2.1560 -6.0331 18 6 -1.2224 -0.0667 -6.9488 19 6 -2.0850 -0.8617 -7.8947 20 1 -2.3168 -1.8937 -7.6764 21 6 -2.5776 -0.2719 -9.0396 22 7 -2.2950 0.9846 -9.3058 23 14 -3.6463 -1.2576 -10.2124 24 1 -4.8615 -1.7268 -9.4992 25 1 -4.0451 -0.4006 -11.3577 26 1 -2.8826 -2.4288 -10.7124 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6768 -0.2075 2.1392 31 1 1.6766 -1.7490 1.2493 32 1 3.9337 0.3055 1.2486 33 1 3.9333 -1.2362 2.1386 34 1 5.1694 -1.4444 -0.0004 35 1 3.7157 -2.4711 -0.0002 36 1 3.9327 -1.2362 -2.1397 37 1 3.9332 0.3052 -1.2499 38 1 1.1545 2.0166 -2.2200 39 1 2.8797 1.5784 -2.2335 40 1 1.9459 1.5642 -3.7489 41 1 1.1217 0.3677 -5.1561 42 1 -0.3312 0.8826 -4.2660 43 1 -1.7831 0.7929 -6.5816 44 1 -0.3307 0.2781 -7.4724 45 1 -2.6418 1.3996 -10.1110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:59 Heat of formation + Delta-G solvation = -154.292466 kcal Electronic energy + Delta-G solvation = -25660.000287 eV Core-core repulsion = 21996.000801 eV Total energy + Delta-G solvation = -3663.999487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58810 -39.40781 -37.79367 -36.81858 -36.23654 -35.39072 -33.51643 -32.25830 -31.04085 -30.13673 -27.99338 -27.10555 -25.57476 -23.68663 -22.34718 -20.98726 -20.39435 -19.62634 -18.91948 -18.52746 -17.65065 -17.40328 -17.10899 -16.65962 -16.43604 -16.06093 -15.54993 -15.47300 -15.08097 -14.75549 -14.60226 -14.45133 -14.02536 -13.84097 -13.74744 -13.65143 -13.40072 -13.34819 -13.16374 -12.93892 -12.87528 -12.85534 -12.71751 -12.55171 -12.52857 -12.08557 -11.96048 -11.85554 -11.75847 -11.55515 -11.34907 -11.21414 -11.09796 -10.90018 -10.76348 -9.72985 -8.41328 -6.56609 -0.83427 1.28399 1.38182 1.40842 1.49143 1.75313 2.16316 2.32396 2.92004 2.92604 3.24739 3.36648 3.61615 3.74771 3.88794 3.95196 4.12377 4.15576 4.18462 4.29304 4.42621 4.46522 4.50102 4.54903 4.67927 4.71866 4.75554 4.78098 4.80773 4.90912 4.96367 5.03602 5.10657 5.15500 5.23302 5.27192 5.32743 5.37410 5.38297 5.48771 5.55576 5.74744 6.10830 6.51159 6.83668 7.13413 8.70817 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033664 B = 0.002939 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.551973 B = 9524.227037 C = 9552.207695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.097 0.903 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.123 4.123 8 C 0.133 3.867 9 H 0.065 0.935 10 N -0.591 5.591 11 C 0.054 3.946 12 C 0.530 3.470 13 O -0.585 6.585 14 C -0.643 4.643 15 S 2.427 3.573 16 O -0.988 6.988 17 O -0.988 6.988 18 C -0.414 4.414 19 C -0.568 4.568 20 H 0.055 0.945 21 C 0.030 3.970 22 N -0.904 5.904 23 Si 0.957 3.043 24 H -0.267 1.267 25 H -0.264 1.264 26 H -0.266 1.266 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.199 0.801 42 H 0.197 0.803 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.437 7.726 20.049 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.116 0.884 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.161 4.161 8 C 0.030 3.970 9 H 0.084 0.916 10 N -0.322 5.322 11 C -0.087 4.087 12 C 0.317 3.683 13 O -0.466 6.466 14 C -0.773 4.773 15 S 2.614 3.386 16 O -0.985 6.985 17 O -0.985 6.985 18 C -0.548 4.548 19 C -0.606 4.606 20 H 0.073 0.927 21 C -0.173 4.173 22 N -0.541 5.541 23 Si 0.780 3.220 24 H -0.191 1.191 25 H -0.188 1.188 26 H -0.191 1.191 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.216 0.784 42 H 0.214 0.786 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.094 6.407 20.252 25.492 hybrid contribution -0.638 0.067 -1.048 1.228 sum 13.457 6.474 19.205 24.327 Atomic orbital electron populations 1.21827 0.95993 1.00899 1.01926 1.21429 0.95032 1.00849 0.93512 0.88433 1.21590 0.96427 1.00160 0.96851 1.21541 0.94475 1.01633 0.97528 1.21520 1.01228 0.98881 0.93899 1.21870 0.92686 1.02734 0.98788 1.21379 0.95129 0.96763 0.83720 0.91641 1.47835 1.48694 1.14051 1.21593 1.22321 1.03239 0.78699 1.04422 1.19696 0.78657 0.85845 0.84056 1.90818 1.59636 1.18757 1.77383 1.30727 1.18526 1.19149 1.08881 1.07676 0.74992 0.78452 0.77460 1.93406 1.49106 1.83423 1.72579 1.93404 1.69634 1.54520 1.80975 1.27590 1.06894 1.09368 1.10923 1.20708 1.33923 0.97989 1.08000 0.92657 1.25699 0.96716 0.96188 0.98697 1.69970 1.44563 1.12412 1.27133 0.85615 0.79166 0.78982 0.78272 1.19144 1.18823 1.19122 0.94967 0.90725 0.93775 0.90071 0.93267 0.90299 0.90856 0.90094 0.93237 0.92977 0.88974 0.90382 0.87996 0.88992 0.78396 0.78609 0.88664 0.88640 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.03 71.98 0.65 -2.37 16 2 C -0.09 -1.42 2.11 -10.79 -0.02 -1.45 16 3 H 0.10 1.11 7.67 -2.39 -0.02 1.10 16 4 C -0.11 -1.50 5.20 30.59 0.16 -1.34 16 5 C -0.11 -1.18 5.92 30.60 0.18 -1.00 16 6 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16 7 C -0.12 -1.93 5.18 30.59 0.16 -1.77 16 8 C 0.13 2.83 1.97 44.99 0.09 2.92 16 9 H 0.07 1.93 6.90 -2.39 -0.02 1.91 16 10 N -0.59 -13.31 1.99 -822.58 -1.64 -14.95 16 11 C 0.05 0.66 9.30 127.77 1.19 1.85 16 12 C 0.53 17.36 7.69 87.66 0.67 18.04 16 13 O -0.58 -25.70 14.95 -0.16 0.00 -25.71 16 14 C -0.64 -18.22 4.84 71.24 0.34 -17.87 16 15 S 2.43 108.55 3.88 -56.49 -0.22 108.33 16 16 O -0.99 -51.74 17.95 -125.76 -2.26 -54.00 16 17 O -0.99 -51.72 17.95 -125.74 -2.26 -53.98 16 18 C -0.41 -19.66 5.56 71.23 0.40 -19.26 16 19 C -0.57 -32.44 9.13 25.60 0.23 -32.21 16 20 H 0.06 3.25 7.71 -2.91 -0.02 3.22 16 21 C 0.03 1.69 5.46 84.65 0.46 2.15 16 22 N -0.90 -50.19 13.29 21.45 0.28 -49.91 16 23 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 0.98 7.60 -2.39 -0.02 0.96 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 0.98 6.66 -2.38 -0.02 0.96 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 0.73 6.43 -2.39 -0.02 0.72 16 40 H 0.09 0.90 6.44 -2.39 -0.02 0.89 16 41 H 0.20 3.85 7.40 -2.39 -0.02 3.83 16 42 H 0.20 3.88 8.11 -2.39 -0.02 3.86 16 43 H 0.10 4.26 8.14 -2.39 -0.02 4.24 16 44 H 0.10 4.26 8.14 -2.39 -0.02 4.24 16 45 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -85.36 369.12 1.59 -83.77 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.96 Total: 14.71 kcal Atomic # 6 Polarization: -58.39 SS G_CDS: 4.70 Total: -53.69 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -1.35 Total: -64.86 kcal Atomic # 8 Polarization: -129.17 SS G_CDS: -4.52 Total: -133.68 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 108.55 SS G_CDS: -0.22 Total: 108.33 kcal Total: -85.36 1.59 -83.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.519 kcal (2) G-P(sol) polarization free energy of solvation -85.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds