Wall clock time and date at job start Tue Mar 31 2020 12:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47324 * 240.00306 * 2 1 3 5 5 O 1.21286 * 120.00081 * 265.00175 * 4 2 1 6 6 N 1.34777 * 120.00001 * 84.99372 * 4 2 1 7 7 C 1.46504 * 120.00066 * 180.02562 * 6 4 2 8 8 H 1.08994 * 109.46938 * 35.00035 * 7 6 4 9 9 C 1.53004 * 109.47042 * 275.00506 * 7 6 4 10 10 C 1.52997 * 109.46999 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47424 * 59.99806 * 10 9 7 12 12 C 1.53005 * 109.46881 * 300.00294 * 11 10 9 13 13 C 1.52997 * 109.47332 * 59.99649 * 12 11 10 14 14 H 1.09008 * 109.46782 * 60.00096 * 13 12 11 15 15 C 1.52994 * 109.47051 * 179.97438 * 13 12 11 16 16 S 1.81397 * 109.47448 * 120.00341 * 2 1 3 17 17 O 1.42098 * 108.58112 * 190.51153 * 16 2 1 18 18 O 1.42106 * 108.58018 * 59.48321 * 16 2 1 19 19 C 1.81404 * 101.92299 * 305.00073 * 16 2 1 20 20 C 1.50695 * 109.47181 * 179.97438 * 19 16 2 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 16 22 22 C 1.37880 * 119.99572 * 179.97438 * 20 19 16 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 H 1.09000 * 109.47677 * 59.99855 * 1 2 3 29 29 H 1.09008 * 109.47100 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47421 * 299.99271 * 1 2 3 31 31 H 0.96998 * 120.00301 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.46656 * 299.99531 * 9 7 6 33 33 H 1.08996 * 109.47216 * 59.99882 * 9 7 6 34 34 H 1.08999 * 109.47338 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47193 * 300.00157 * 10 9 7 36 36 H 1.08999 * 109.46649 * 60.00017 * 11 10 9 37 37 H 1.08993 * 109.47479 * 180.02562 * 11 10 9 38 38 H 1.08996 * 109.46906 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.46777 * 299.99416 * 12 11 10 40 40 H 1.09008 * 109.47383 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47677 * 300.00289 * 15 13 12 42 42 H 1.08999 * 109.47313 * 60.00434 * 15 13 12 43 43 H 1.09002 * 109.47042 * 59.99632 * 19 16 2 44 44 H 1.08998 * 109.46860 * 300.00483 * 19 16 2 45 45 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3208 -1.8871 -1.1761 6 7 2.1609 -0.0379 -2.3914 7 6 2.6488 -0.7286 -3.5878 8 1 2.2852 -1.7561 -3.5878 9 6 4.1788 -0.7291 -3.5881 10 6 4.6883 -1.4499 -4.8378 11 6 4.1783 -0.7278 -6.0866 12 6 2.6482 -0.7273 -6.0862 13 6 2.1388 -0.0066 -4.8365 14 1 2.5025 1.0211 -4.8361 15 6 0.6088 -0.0055 -4.8365 16 16 2.1347 -0.8552 1.4810 17 8 3.5342 -0.6351 1.5912 18 8 1.6408 -2.1876 1.4679 19 6 1.2998 0.0575 2.8080 20 6 1.6903 -0.5257 4.1415 21 1 2.3728 -1.3615 4.1864 22 6 1.1770 0.0085 5.3044 23 7 0.3463 1.0266 5.2497 24 14 1.6616 -0.7139 6.9575 25 1 3.1324 -0.6073 7.1323 26 1 1.2590 -2.1423 7.0107 27 1 0.9790 0.0340 8.0438 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.9305 0.9033 -2.4349 32 1 4.5424 0.2985 -3.5881 33 1 4.5422 -1.2431 -2.6983 34 1 5.7783 -1.4507 -4.8378 35 1 4.3246 -2.4774 -4.8383 36 1 4.5420 0.2997 -6.0861 37 1 4.5408 -1.2415 -6.9769 38 1 2.2849 -0.2125 -6.9756 39 1 2.2846 -1.7548 -6.0867 40 1 0.2458 0.5084 -3.9464 41 1 0.2457 0.5091 -5.7261 42 1 0.2448 -1.0329 -4.8371 43 1 0.2203 -0.0211 2.6795 44 1 1.5949 1.1060 2.7690 45 1 0.0950 1.4020 4.3913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:12 Heat of formation + Delta-G solvation = -144.986727 kcal Electronic energy + Delta-G solvation = -25659.567376 eV Core-core repulsion = 21995.971416 eV Total energy + Delta-G solvation = -3663.595960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41757 -38.54312 -36.10271 -35.10166 -34.45575 -33.81317 -33.22889 -32.75303 -29.74958 -28.58103 -26.62861 -24.90868 -23.47155 -22.81088 -21.59637 -20.73168 -20.14844 -18.21692 -17.57162 -17.03459 -16.88110 -15.82006 -15.52242 -15.14604 -14.99251 -14.66839 -14.60772 -14.36311 -14.03521 -13.79579 -13.65221 -13.18270 -12.87890 -12.80758 -12.74357 -12.62108 -12.23587 -12.14932 -11.94843 -11.84930 -11.59815 -11.50655 -11.22299 -11.15770 -11.10869 -10.88332 -10.80154 -10.77249 -10.48550 -10.25703 -10.18072 -9.89802 -9.41905 -9.18729 -9.05946 -8.63812 -6.69298 -4.45062 0.73059 2.50271 2.92115 3.38463 3.40064 3.58521 3.67335 4.21996 4.28292 4.36231 4.39837 4.46633 4.54026 4.75727 4.77800 4.87711 4.99506 5.03865 5.07990 5.10624 5.14453 5.18908 5.27301 5.36347 5.40506 5.48115 5.54671 5.62091 5.67948 5.70592 5.80427 5.82195 5.87276 5.94746 5.97261 6.06473 6.13351 6.32265 6.34611 6.37982 7.26384 7.44923 8.04372 8.04813 8.48722 9.29007 10.73391 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032053 B = 0.003065 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.332445 B = 9133.884755 C = 9593.943515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.634 4.634 3 H 0.146 0.854 4 C 0.545 3.455 5 O -0.519 6.519 6 N -0.719 5.719 7 C 0.148 3.852 8 H 0.091 0.909 9 C -0.135 4.135 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.111 4.111 13 C -0.098 4.098 14 H 0.075 0.925 15 C -0.149 4.149 16 S 2.430 3.570 17 O -0.948 6.948 18 O -0.925 6.925 19 C -0.427 4.427 20 C -0.605 4.605 21 H 0.067 0.933 22 C 0.036 3.964 23 N -0.894 5.894 24 Si 1.072 2.928 25 H -0.280 1.280 26 H -0.280 1.280 27 H -0.278 1.278 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.401 0.599 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 2.750 -22.715 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.738 4.738 3 H 0.164 0.836 4 C 0.330 3.670 5 O -0.394 6.394 6 N -0.370 5.370 7 C 0.043 3.957 8 H 0.109 0.891 9 C -0.173 4.173 10 C -0.155 4.155 11 C -0.159 4.159 12 C -0.149 4.149 13 C -0.117 4.117 14 H 0.094 0.906 15 C -0.206 4.206 16 S 2.610 3.390 17 O -0.945 6.945 18 O -0.922 6.922 19 C -0.562 4.562 20 C -0.643 4.643 21 H 0.085 0.915 22 C -0.172 4.172 23 N -0.527 5.527 24 Si 0.897 3.103 25 H -0.206 1.206 26 H -0.206 1.206 27 H -0.202 1.202 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.235 0.765 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.940 1.340 -21.119 21.250 hybrid contribution -0.396 1.291 -1.965 2.384 sum 1.544 2.631 -23.083 23.284 Atomic orbital electron populations 1.21557 0.87887 1.04861 1.04675 1.30966 1.08904 1.15512 1.18416 0.83562 1.19411 0.77105 0.86762 0.83768 1.90865 1.48972 1.14988 1.84573 1.45955 1.67673 1.13992 1.09397 1.21091 0.93825 0.97680 0.83070 0.89094 1.21976 0.94985 1.01366 0.99009 1.21496 1.00561 0.99645 0.93805 1.21578 0.95437 1.00882 0.97989 1.21556 0.95677 1.00932 0.96709 1.21405 0.96115 0.99951 0.94205 0.90628 1.21847 0.94618 1.02369 1.01808 1.08308 0.76664 0.77453 0.76598 1.93470 1.29256 1.86801 1.85014 1.93487 1.81677 1.32156 1.84919 1.27750 1.08195 1.08585 1.11632 1.21260 1.33501 1.20410 0.89165 0.91500 1.25993 0.93240 0.94650 1.03303 1.70818 1.30659 1.21845 1.29406 0.83510 0.76620 0.76050 0.74101 1.20626 1.20572 1.20249 0.90884 0.90094 0.89393 0.76482 0.91651 0.90895 0.91592 0.91625 0.91918 0.91818 0.91504 0.91557 0.92425 0.92437 0.92392 0.90200 0.90655 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.88 37.15 0.33 -1.41 16 2 C -0.63 -9.88 3.15 -27.89 -0.09 -9.96 16 3 H 0.15 1.72 8.14 -51.92 -0.42 1.30 16 4 C 0.55 8.88 6.92 -10.99 -0.08 8.80 16 5 O -0.52 -10.70 15.14 -9.38 -0.14 -10.84 16 6 N -0.72 -8.35 4.38 -53.80 -0.24 -8.58 16 7 C 0.15 1.57 1.90 -67.93 -0.13 1.44 16 8 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 9 C -0.13 -1.44 5.49 -26.73 -0.15 -1.59 16 10 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 11 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 12 C -0.11 -0.75 5.20 -26.73 -0.14 -0.89 16 13 C -0.10 -0.74 2.29 -90.63 -0.21 -0.95 16 14 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 15 C -0.15 -1.09 9.04 37.15 0.34 -0.76 16 16 S 2.43 53.89 3.80 -107.50 -0.41 53.48 16 17 O -0.95 -23.73 18.10 -57.83 -1.05 -24.77 16 18 O -0.93 -23.56 17.21 -64.28 -1.11 -24.66 16 19 C -0.43 -10.06 4.27 36.00 0.15 -9.90 16 20 C -0.60 -17.04 9.13 -34.44 -0.31 -17.35 16 21 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 22 C 0.04 1.00 5.46 -17.82 -0.10 0.90 16 23 N -0.89 -25.63 13.65 55.43 0.76 -24.87 16 24 Si 1.07 24.67 29.90 -169.99 -5.08 19.59 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.09 1.09 6.39 -51.93 -0.33 0.76 16 31 H 0.40 3.40 8.39 -40.82 -0.34 3.06 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.43 7.45 -51.92 -0.39 0.04 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 1.75 6.64 -51.92 -0.34 1.41 16 44 H 0.08 1.66 8.01 -51.93 -0.42 1.24 16 45 H 0.27 7.45 7.22 -40.82 -0.29 7.16 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -36.91 370.45 -10.01 -46.92 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.63 Total: 1.98 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: -0.70 Total: -33.82 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.52 Total: -33.45 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -2.29 Total: -60.27 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Atomic # 16 Polarization: 53.89 SS G_CDS: -0.41 Total: 53.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.91 -10.01 -46.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.067 kcal (2) G-P(sol) polarization free energy of solvation -36.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds