Wall clock time and date at job start Tue Mar 31 2020 12:52:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08999 * 109.47313 * 2 1
4 4 C 1.50699 * 109.47324 * 240.00306 * 2 1 3
5 5 O 1.21286 * 120.00081 * 265.00175 * 4 2 1
6 6 N 1.34777 * 120.00001 * 84.99372 * 4 2 1
7 7 C 1.46504 * 120.00066 * 180.02562 * 6 4 2
8 8 H 1.08994 * 109.46938 * 35.00035 * 7 6 4
9 9 C 1.53004 * 109.47042 * 275.00506 * 7 6 4
10 10 C 1.52997 * 109.46999 * 180.02562 * 9 7 6
11 11 C 1.53005 * 109.47424 * 59.99806 * 10 9 7
12 12 C 1.53005 * 109.46881 * 300.00294 * 11 10 9
13 13 C 1.52997 * 109.47332 * 59.99649 * 12 11 10
14 14 H 1.09008 * 109.46782 * 60.00096 * 13 12 11
15 15 C 1.52994 * 109.47051 * 179.97438 * 13 12 11
16 16 S 1.81397 * 109.47448 * 120.00341 * 2 1 3
17 17 O 1.42098 * 108.58112 * 190.51153 * 16 2 1
18 18 O 1.42106 * 108.58018 * 59.48321 * 16 2 1
19 19 C 1.81404 * 101.92299 * 305.00073 * 16 2 1
20 20 C 1.50695 * 109.47181 * 179.97438 * 19 16 2
21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 16
22 22 C 1.37880 * 119.99572 * 179.97438 * 20 19 16
23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19
25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20
26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20
27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20
28 28 H 1.09000 * 109.47677 * 59.99855 * 1 2 3
29 29 H 1.09008 * 109.47100 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.47421 * 299.99271 * 1 2 3
31 31 H 0.96998 * 120.00301 * 0.02562 * 6 4 2
32 32 H 1.09004 * 109.46656 * 299.99531 * 9 7 6
33 33 H 1.08996 * 109.47216 * 59.99882 * 9 7 6
34 34 H 1.08999 * 109.47338 * 180.02562 * 10 9 7
35 35 H 1.08999 * 109.47193 * 300.00157 * 10 9 7
36 36 H 1.08999 * 109.46649 * 60.00017 * 11 10 9
37 37 H 1.08993 * 109.47479 * 180.02562 * 11 10 9
38 38 H 1.08996 * 109.46906 * 179.97438 * 12 11 10
39 39 H 1.08995 * 109.46777 * 299.99416 * 12 11 10
40 40 H 1.09008 * 109.47383 * 180.02562 * 15 13 12
41 41 H 1.09000 * 109.47677 * 300.00289 * 15 13 12
42 42 H 1.08999 * 109.47313 * 60.00434 * 15 13 12
43 43 H 1.09002 * 109.47042 * 59.99632 * 19 16 2
44 44 H 1.08998 * 109.46860 * 300.00483 * 19 16 2
45 45 H 0.97006 * 119.99995 * 359.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2305
5 8 2.3208 -1.8871 -1.1761
6 7 2.1609 -0.0379 -2.3914
7 6 2.6488 -0.7286 -3.5878
8 1 2.2852 -1.7561 -3.5878
9 6 4.1788 -0.7291 -3.5881
10 6 4.6883 -1.4499 -4.8378
11 6 4.1783 -0.7278 -6.0866
12 6 2.6482 -0.7273 -6.0862
13 6 2.1388 -0.0066 -4.8365
14 1 2.5025 1.0211 -4.8361
15 6 0.6088 -0.0055 -4.8365
16 16 2.1347 -0.8552 1.4810
17 8 3.5342 -0.6351 1.5912
18 8 1.6408 -2.1876 1.4679
19 6 1.2998 0.0575 2.8080
20 6 1.6903 -0.5257 4.1415
21 1 2.3728 -1.3615 4.1864
22 6 1.1770 0.0085 5.3044
23 7 0.3463 1.0266 5.2497
24 14 1.6616 -0.7139 6.9575
25 1 3.1324 -0.6073 7.1323
26 1 1.2590 -2.1423 7.0107
27 1 0.9790 0.0340 8.0438
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5137 0.8901
31 1 1.9305 0.9033 -2.4349
32 1 4.5424 0.2985 -3.5881
33 1 4.5422 -1.2431 -2.6983
34 1 5.7783 -1.4507 -4.8378
35 1 4.3246 -2.4774 -4.8383
36 1 4.5420 0.2997 -6.0861
37 1 4.5408 -1.2415 -6.9769
38 1 2.2849 -0.2125 -6.9756
39 1 2.2846 -1.7548 -6.0867
40 1 0.2458 0.5084 -3.9464
41 1 0.2457 0.5091 -5.7261
42 1 0.2448 -1.0329 -4.8371
43 1 0.2203 -0.0211 2.6795
44 1 1.5949 1.1060 2.7690
45 1 0.0950 1.4020 4.3913
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000905266884.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:52:12
Heat of formation + Delta-G solvation = -144.986727 kcal
Electronic energy + Delta-G solvation = -25659.567376 eV
Core-core repulsion = 21995.971416 eV
Total energy + Delta-G solvation = -3663.595960 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.149 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.41757 -38.54312 -36.10271 -35.10166 -34.45575 -33.81317 -33.22889 -32.75303
-29.74958 -28.58103 -26.62861 -24.90868 -23.47155 -22.81088 -21.59637 -20.73168
-20.14844 -18.21692 -17.57162 -17.03459 -16.88110 -15.82006 -15.52242 -15.14604
-14.99251 -14.66839 -14.60772 -14.36311 -14.03521 -13.79579 -13.65221 -13.18270
-12.87890 -12.80758 -12.74357 -12.62108 -12.23587 -12.14932 -11.94843 -11.84930
-11.59815 -11.50655 -11.22299 -11.15770 -11.10869 -10.88332 -10.80154 -10.77249
-10.48550 -10.25703 -10.18072 -9.89802 -9.41905 -9.18729 -9.05946 -8.63812
-6.69298 -4.45062 0.73059 2.50271 2.92115 3.38463 3.40064 3.58521
3.67335 4.21996 4.28292 4.36231 4.39837 4.46633 4.54026 4.75727
4.77800 4.87711 4.99506 5.03865 5.07990 5.10624 5.14453 5.18908
5.27301 5.36347 5.40506 5.48115 5.54671 5.62091 5.67948 5.70592
5.80427 5.82195 5.87276 5.94746 5.97261 6.06473 6.13351 6.32265
6.34611 6.37982 7.26384 7.44923 8.04372 8.04813 8.48722 9.29007
10.73391
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.032053 B = 0.003065 C = 0.002918
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 873.332445 B = 9133.884755 C = 9593.943515
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.634 4.634
3 H 0.146 0.854
4 C 0.545 3.455
5 O -0.519 6.519
6 N -0.719 5.719
7 C 0.148 3.852
8 H 0.091 0.909
9 C -0.135 4.135
10 C -0.117 4.117
11 C -0.121 4.121
12 C -0.111 4.111
13 C -0.098 4.098
14 H 0.075 0.925
15 C -0.149 4.149
16 S 2.430 3.570
17 O -0.948 6.948
18 O -0.925 6.925
19 C -0.427 4.427
20 C -0.605 4.605
21 H 0.067 0.933
22 C 0.036 3.964
23 N -0.894 5.894
24 Si 1.072 2.928
25 H -0.280 1.280
26 H -0.280 1.280
27 H -0.278 1.278
28 H 0.072 0.928
29 H 0.080 0.920
30 H 0.087 0.913
31 H 0.401 0.599
32 H 0.065 0.935
33 H 0.072 0.928
34 H 0.065 0.935
35 H 0.065 0.935
36 H 0.062 0.938
37 H 0.063 0.937
38 H 0.066 0.934
39 H 0.066 0.934
40 H 0.057 0.943
41 H 0.057 0.943
42 H 0.057 0.943
43 H 0.080 0.920
44 H 0.075 0.925
45 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.391 2.750 -22.715 22.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.738 4.738
3 H 0.164 0.836
4 C 0.330 3.670
5 O -0.394 6.394
6 N -0.370 5.370
7 C 0.043 3.957
8 H 0.109 0.891
9 C -0.173 4.173
10 C -0.155 4.155
11 C -0.159 4.159
12 C -0.149 4.149
13 C -0.117 4.117
14 H 0.094 0.906
15 C -0.206 4.206
16 S 2.610 3.390
17 O -0.945 6.945
18 O -0.922 6.922
19 C -0.562 4.562
20 C -0.643 4.643
21 H 0.085 0.915
22 C -0.172 4.172
23 N -0.527 5.527
24 Si 0.897 3.103
25 H -0.206 1.206
26 H -0.206 1.206
27 H -0.202 1.202
28 H 0.091 0.909
29 H 0.099 0.901
30 H 0.106 0.894
31 H 0.235 0.765
32 H 0.083 0.917
33 H 0.091 0.909
34 H 0.084 0.916
35 H 0.084 0.916
36 H 0.081 0.919
37 H 0.082 0.918
38 H 0.085 0.915
39 H 0.084 0.916
40 H 0.076 0.924
41 H 0.076 0.924
42 H 0.076 0.924
43 H 0.098 0.902
44 H 0.093 0.907
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 1.940 1.340 -21.119 21.250
hybrid contribution -0.396 1.291 -1.965 2.384
sum 1.544 2.631 -23.083 23.284
Atomic orbital electron populations
1.21557 0.87887 1.04861 1.04675 1.30966 1.08904 1.15512 1.18416
0.83562 1.19411 0.77105 0.86762 0.83768 1.90865 1.48972 1.14988
1.84573 1.45955 1.67673 1.13992 1.09397 1.21091 0.93825 0.97680
0.83070 0.89094 1.21976 0.94985 1.01366 0.99009 1.21496 1.00561
0.99645 0.93805 1.21578 0.95437 1.00882 0.97989 1.21556 0.95677
1.00932 0.96709 1.21405 0.96115 0.99951 0.94205 0.90628 1.21847
0.94618 1.02369 1.01808 1.08308 0.76664 0.77453 0.76598 1.93470
1.29256 1.86801 1.85014 1.93487 1.81677 1.32156 1.84919 1.27750
1.08195 1.08585 1.11632 1.21260 1.33501 1.20410 0.89165 0.91500
1.25993 0.93240 0.94650 1.03303 1.70818 1.30659 1.21845 1.29406
0.83510 0.76620 0.76050 0.74101 1.20626 1.20572 1.20249 0.90884
0.90094 0.89393 0.76482 0.91651 0.90895 0.91592 0.91625 0.91918
0.91818 0.91504 0.91557 0.92425 0.92437 0.92392 0.90200 0.90655
0.91924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.74 8.88 37.15 0.33 -1.41 16
2 C -0.63 -9.88 3.15 -27.89 -0.09 -9.96 16
3 H 0.15 1.72 8.14 -51.92 -0.42 1.30 16
4 C 0.55 8.88 6.92 -10.99 -0.08 8.80 16
5 O -0.52 -10.70 15.14 -9.38 -0.14 -10.84 16
6 N -0.72 -8.35 4.38 -53.80 -0.24 -8.58 16
7 C 0.15 1.57 1.90 -67.93 -0.13 1.44 16
8 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16
9 C -0.13 -1.44 5.49 -26.73 -0.15 -1.59 16
10 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16
11 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16
12 C -0.11 -0.75 5.20 -26.73 -0.14 -0.89 16
13 C -0.10 -0.74 2.29 -90.63 -0.21 -0.95 16
14 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16
15 C -0.15 -1.09 9.04 37.15 0.34 -0.76 16
16 S 2.43 53.89 3.80 -107.50 -0.41 53.48 16
17 O -0.95 -23.73 18.10 -57.83 -1.05 -24.77 16
18 O -0.93 -23.56 17.21 -64.28 -1.11 -24.66 16
19 C -0.43 -10.06 4.27 36.00 0.15 -9.90 16
20 C -0.60 -17.04 9.13 -34.44 -0.31 -17.35 16
21 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16
22 C 0.04 1.00 5.46 -17.82 -0.10 0.90 16
23 N -0.89 -25.63 13.65 55.43 0.76 -24.87 16
24 Si 1.07 24.67 29.90 -169.99 -5.08 19.59 16
25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16
26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
29 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16
30 H 0.09 1.09 6.39 -51.93 -0.33 0.76 16
31 H 0.40 3.40 8.39 -40.82 -0.34 3.06 16
32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
40 H 0.06 0.43 7.45 -51.92 -0.39 0.04 16
41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
43 H 0.08 1.75 6.64 -51.92 -0.34 1.41 16
44 H 0.08 1.66 8.01 -51.93 -0.42 1.24 16
45 H 0.27 7.45 7.22 -40.82 -0.29 7.16 16
LS Contribution 370.45 15.07 5.58 5.58
Total: -1.00 -36.91 370.45 -10.01 -46.92
By element:
Atomic # 1 Polarization: 9.61 SS G_CDS: -7.63 Total: 1.98 kcal
Atomic # 6 Polarization: -33.13 SS G_CDS: -0.70 Total: -33.82 kcal
Atomic # 7 Polarization: -33.97 SS G_CDS: 0.52 Total: -33.45 kcal
Atomic # 8 Polarization: -57.98 SS G_CDS: -2.29 Total: -60.27 kcal
Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal
Atomic # 16 Polarization: 53.89 SS G_CDS: -0.41 Total: 53.48 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -36.91 -10.01 -46.92 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000905266884.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -98.067 kcal
(2) G-P(sol) polarization free energy of solvation -36.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.920 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds