Wall clock time and date at job start Tue Mar 31 2020 12:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47324 * 240.00306 * 2 1 3 5 5 O 1.21286 * 120.00081 * 265.00175 * 4 2 1 6 6 N 1.34777 * 120.00001 * 84.99372 * 4 2 1 7 7 C 1.46504 * 120.00066 * 180.02562 * 6 4 2 8 8 H 1.08994 * 109.46938 * 35.00035 * 7 6 4 9 9 C 1.53004 * 109.47042 * 275.00506 * 7 6 4 10 10 C 1.52997 * 109.46999 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47424 * 59.99806 * 10 9 7 12 12 C 1.53005 * 109.46881 * 300.00294 * 11 10 9 13 13 C 1.52997 * 109.47332 * 59.99649 * 12 11 10 14 14 H 1.09008 * 109.46782 * 60.00096 * 13 12 11 15 15 C 1.52994 * 109.47051 * 179.97438 * 13 12 11 16 16 S 1.81397 * 109.47448 * 120.00341 * 2 1 3 17 17 O 1.42098 * 108.58112 * 190.51153 * 16 2 1 18 18 O 1.42106 * 108.58018 * 59.48321 * 16 2 1 19 19 C 1.81404 * 101.92299 * 305.00073 * 16 2 1 20 20 C 1.50695 * 109.47181 * 179.97438 * 19 16 2 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 16 22 22 C 1.37880 * 119.99572 * 179.97438 * 20 19 16 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 H 1.09000 * 109.47677 * 59.99855 * 1 2 3 29 29 H 1.09008 * 109.47100 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47421 * 299.99271 * 1 2 3 31 31 H 0.96998 * 120.00301 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.46656 * 299.99531 * 9 7 6 33 33 H 1.08996 * 109.47216 * 59.99882 * 9 7 6 34 34 H 1.08999 * 109.47338 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47193 * 300.00157 * 10 9 7 36 36 H 1.08999 * 109.46649 * 60.00017 * 11 10 9 37 37 H 1.08993 * 109.47479 * 180.02562 * 11 10 9 38 38 H 1.08996 * 109.46906 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.46777 * 299.99416 * 12 11 10 40 40 H 1.09008 * 109.47383 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47677 * 300.00289 * 15 13 12 42 42 H 1.08999 * 109.47313 * 60.00434 * 15 13 12 43 43 H 1.09002 * 109.47042 * 59.99632 * 19 16 2 44 44 H 1.08998 * 109.46860 * 300.00483 * 19 16 2 45 45 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3208 -1.8871 -1.1761 6 7 2.1609 -0.0379 -2.3914 7 6 2.6488 -0.7286 -3.5878 8 1 2.2852 -1.7561 -3.5878 9 6 4.1788 -0.7291 -3.5881 10 6 4.6883 -1.4499 -4.8378 11 6 4.1783 -0.7278 -6.0866 12 6 2.6482 -0.7273 -6.0862 13 6 2.1388 -0.0066 -4.8365 14 1 2.5025 1.0211 -4.8361 15 6 0.6088 -0.0055 -4.8365 16 16 2.1347 -0.8552 1.4810 17 8 3.5342 -0.6351 1.5912 18 8 1.6408 -2.1876 1.4679 19 6 1.2998 0.0575 2.8080 20 6 1.6903 -0.5257 4.1415 21 1 2.3728 -1.3615 4.1864 22 6 1.1770 0.0085 5.3044 23 7 0.3463 1.0266 5.2497 24 14 1.6616 -0.7139 6.9575 25 1 3.1324 -0.6073 7.1323 26 1 1.2590 -2.1423 7.0107 27 1 0.9790 0.0340 8.0438 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.9305 0.9033 -2.4349 32 1 4.5424 0.2985 -3.5881 33 1 4.5422 -1.2431 -2.6983 34 1 5.7783 -1.4507 -4.8378 35 1 4.3246 -2.4774 -4.8383 36 1 4.5420 0.2997 -6.0861 37 1 4.5408 -1.2415 -6.9769 38 1 2.2849 -0.2125 -6.9756 39 1 2.2846 -1.7548 -6.0867 40 1 0.2458 0.5084 -3.9464 41 1 0.2457 0.5091 -5.7261 42 1 0.2448 -1.0329 -4.8371 43 1 0.2203 -0.0211 2.6795 44 1 1.5949 1.1060 2.7690 45 1 0.0950 1.4020 4.3913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:11 Heat of formation + Delta-G solvation = -171.953226 kcal Electronic energy + Delta-G solvation = -25660.736731 eV Core-core repulsion = 21995.971416 eV Total energy + Delta-G solvation = -3664.765315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52038 -39.48240 -37.97580 -36.96701 -35.87438 -35.51531 -34.46971 -33.44229 -30.75018 -30.37082 -27.32000 -26.04081 -25.52186 -23.70120 -22.27805 -21.88656 -20.97122 -19.88447 -19.36437 -18.48348 -18.28324 -17.23812 -17.04030 -16.58166 -16.30843 -15.68925 -15.64983 -15.49180 -15.28120 -14.95486 -14.84205 -14.47719 -14.31842 -14.08953 -13.85441 -13.79651 -13.43251 -13.35040 -13.16230 -13.06208 -12.97387 -12.89026 -12.58642 -12.54570 -12.22696 -11.96063 -11.86059 -11.78352 -11.61179 -11.48648 -11.38317 -11.27230 -11.12615 -10.88067 -10.71817 -10.22258 -8.88883 -6.64964 -1.00713 1.22237 1.51276 1.57593 1.73795 1.79452 2.01759 2.45188 2.85439 2.92630 3.09512 3.32675 3.55682 3.64405 3.71742 3.83905 3.89860 4.11614 4.17658 4.36467 4.39832 4.43078 4.47602 4.47852 4.50422 4.51070 4.56244 4.75166 4.79579 4.96088 4.98973 5.01252 5.03692 5.12439 5.19859 5.24251 5.32358 5.36816 5.37757 5.39050 5.53807 5.88300 6.21710 6.33440 6.92092 7.14345 8.57121 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032053 B = 0.003065 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.332445 B = 9133.884755 C = 9593.943515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.600 4.600 3 H 0.196 0.804 4 C 0.537 3.463 5 O -0.572 6.572 6 N -0.692 5.692 7 C 0.144 3.856 8 H 0.064 0.936 9 C -0.135 4.135 10 C -0.117 4.117 11 C -0.116 4.116 12 C -0.110 4.110 13 C -0.088 4.088 14 H 0.096 0.904 15 C -0.150 4.150 16 S 2.426 3.574 17 O -0.990 6.990 18 O -0.973 6.973 19 C -0.438 4.438 20 C -0.638 4.638 21 H 0.047 0.953 22 C -0.007 4.007 23 N -0.910 5.910 24 Si 1.104 2.896 25 H -0.268 1.268 26 H -0.269 1.269 27 H -0.267 1.267 28 H 0.121 0.879 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.421 0.579 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 5.237 -25.110 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.712 4.712 3 H 0.214 0.786 4 C 0.321 3.679 5 O -0.451 6.451 6 N -0.344 5.344 7 C 0.040 3.960 8 H 0.083 0.917 9 C -0.174 4.174 10 C -0.155 4.155 11 C -0.153 4.153 12 C -0.148 4.148 13 C -0.107 4.107 14 H 0.114 0.886 15 C -0.207 4.207 16 S 2.613 3.387 17 O -0.988 6.988 18 O -0.970 6.970 19 C -0.571 4.571 20 C -0.676 4.676 21 H 0.065 0.935 22 C -0.210 4.210 23 N -0.544 5.544 24 Si 0.924 3.076 25 H -0.193 1.193 26 H -0.194 1.194 27 H -0.191 1.191 28 H 0.139 0.861 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.259 0.741 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.216 3.845 -23.483 23.826 hybrid contribution -0.181 0.558 -1.395 1.513 sum 1.035 4.402 -24.878 25.285 Atomic orbital electron populations 1.21766 0.85449 1.04809 1.07598 1.30509 1.10777 1.16512 1.13401 0.78641 1.19551 0.77046 0.86275 0.85004 1.90863 1.51505 1.17373 1.85369 1.45802 1.65641 1.14776 1.08184 1.21244 0.93828 0.96995 0.83972 0.91735 1.21966 0.95033 1.01965 0.98387 1.21503 1.00861 0.99102 0.94017 1.21557 0.95481 1.01291 0.97017 1.21582 0.95552 1.00673 0.97013 1.21388 0.96389 1.00490 0.92436 0.88592 1.21868 0.94164 1.01833 1.02852 1.07779 0.75717 0.77032 0.78169 1.93411 1.31594 1.87231 1.86529 1.93427 1.81984 1.35244 1.86382 1.27745 1.09254 1.09284 1.10786 1.21635 1.33635 1.20448 0.91922 0.93519 1.27252 0.92728 0.94493 1.06483 1.70901 1.31505 1.22547 1.29482 0.83128 0.77250 0.76168 0.71095 1.19333 1.19442 1.19092 0.86069 0.91779 0.88318 0.74055 0.90082 0.94828 0.91159 0.92837 0.90761 0.90667 0.89403 0.92463 0.92208 0.90579 0.93778 0.88669 0.88986 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.88 71.98 0.64 -2.61 16 2 C -0.60 -17.52 3.15 29.85 0.09 -17.43 16 3 H 0.20 3.77 8.14 -2.39 -0.02 3.75 16 4 C 0.54 17.00 6.92 87.66 0.61 17.60 16 5 O -0.57 -24.39 15.14 11.23 0.17 -24.22 16 6 N -0.69 -14.48 4.38 -442.53 -1.94 -16.42 16 7 C 0.14 2.88 1.90 44.99 0.09 2.97 16 8 H 0.06 1.67 7.58 -2.39 -0.02 1.66 16 9 C -0.13 -2.82 5.49 30.59 0.17 -2.65 16 10 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 11 C -0.12 -1.27 5.92 30.60 0.18 -1.09 16 12 C -0.11 -1.16 5.20 30.59 0.16 -1.01 16 13 C -0.09 -1.05 2.29 -10.80 -0.02 -1.08 16 14 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 15 C -0.15 -1.70 9.04 71.98 0.65 -1.05 16 16 S 2.43 109.96 3.80 -56.49 -0.21 109.75 16 17 O -0.99 -51.30 18.10 -127.37 -2.30 -53.60 16 18 O -0.97 -51.99 17.21 -121.20 -2.09 -54.08 16 19 C -0.44 -20.71 4.27 71.23 0.30 -20.41 16 20 C -0.64 -36.82 9.13 25.60 0.23 -36.59 16 21 H 0.05 2.80 7.71 -2.91 -0.02 2.78 16 22 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 23 N -0.91 -52.01 13.65 21.45 0.29 -51.71 16 24 Si 1.10 49.66 29.90 68.60 2.05 51.71 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.10 2.15 6.39 -2.38 -0.02 2.14 16 31 H 0.42 5.32 8.39 -92.71 -0.78 4.54 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.65 7.45 -2.38 -0.02 0.63 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.10 4.17 6.64 -2.39 -0.02 4.15 16 44 H 0.09 4.00 8.01 -2.39 -0.02 3.98 16 45 H 0.27 14.74 7.22 -92.70 -0.67 14.07 16 Total: -1.00 -85.63 370.45 0.00 -85.62 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.29 Total: 17.93 kcal Atomic # 6 Polarization: -68.72 SS G_CDS: 3.74 Total: -64.98 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.65 Total: -68.13 kcal Atomic # 8 Polarization: -127.68 SS G_CDS: -4.22 Total: -131.90 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Atomic # 16 Polarization: 109.96 SS G_CDS: -0.21 Total: 109.75 kcal Total: -85.63 0.00 -85.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.330 kcal (2) G-P(sol) polarization free energy of solvation -85.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds