Wall clock time and date at job start Tue Mar 31 2020 12:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50700 * 109.47452 * 239.99776 * 2 1 3 5 5 O 1.21283 * 119.99803 * 264.99929 * 4 2 1 6 6 N 1.34777 * 119.99675 * 85.27804 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09001 * 109.47884 * 324.99780 * 7 6 4 9 9 C 1.53008 * 109.47335 * 84.99977 * 7 6 4 10 10 C 1.53004 * 109.47096 * 59.99447 * 9 7 6 11 11 C 1.52998 * 109.46898 * 60.00278 * 10 9 7 12 12 C 1.52996 * 109.47309 * 299.99819 * 11 10 9 13 13 C 1.53001 * 109.47201 * 204.99403 * 7 6 4 14 14 H 1.09003 * 109.47384 * 180.02562 * 13 7 6 15 15 C 1.53005 * 109.46828 * 60.00251 * 13 7 6 16 16 S 1.81405 * 109.47061 * 119.99847 * 2 1 3 17 17 O 1.42098 * 108.57735 * 59.48838 * 16 2 1 18 18 O 1.42099 * 108.57902 * 190.51551 * 16 2 1 19 19 C 1.81408 * 101.92035 * 305.00177 * 16 2 1 20 20 C 1.50698 * 109.47030 * 180.02562 * 19 16 2 21 21 H 1.07995 * 120.00192 * 359.97438 * 20 19 16 22 22 C 1.37879 * 119.99885 * 180.02562 * 20 19 16 23 23 N 1.31510 * 119.99943 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99912 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47365 * 90.00704 * 24 22 20 26 26 H 1.48501 * 109.47406 * 210.00529 * 24 22 20 27 27 H 1.48498 * 109.47335 * 330.00272 * 24 22 20 28 28 H 1.08996 * 109.47622 * 300.00328 * 1 2 3 29 29 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 30 30 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 32 32 H 1.08995 * 109.47273 * 180.02562 * 9 7 6 33 33 H 1.08998 * 109.46811 * 299.99762 * 9 7 6 34 34 H 1.08997 * 109.46649 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47017 * 300.00021 * 10 9 7 36 36 H 1.09003 * 109.47086 * 59.99837 * 11 10 9 37 37 H 1.08994 * 109.47018 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47550 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.47542 * 300.00563 * 12 11 10 40 40 H 1.08994 * 109.47191 * 60.00002 * 15 13 7 41 41 H 1.08998 * 109.47131 * 180.02562 * 15 13 7 42 42 H 1.09003 * 109.46937 * 300.00028 * 15 13 7 43 43 H 1.09001 * 109.46696 * 300.00060 * 19 16 2 44 44 H 1.09003 * 109.46811 * 59.99587 * 19 16 2 45 45 H 0.96997 * 119.99878 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3209 -1.8872 -1.1758 6 7 2.1665 -0.0367 -2.3900 7 6 2.6606 -0.7259 -3.5845 8 1 3.4033 -1.4691 -3.2943 9 6 1.4947 -1.4195 -4.2922 10 6 0.4521 -0.3764 -4.6996 11 6 1.0915 0.6405 -5.6472 12 6 2.2573 1.3341 -4.9397 13 6 3.2999 0.2910 -4.5323 14 1 3.6671 -0.2218 -5.4213 15 6 4.4658 0.9846 -3.8247 16 16 2.1347 -0.8551 1.4812 17 8 1.6408 -2.1875 1.4681 18 8 3.5341 -0.6349 1.5915 19 6 1.2996 0.0577 2.8080 20 6 1.6910 -0.5245 4.1417 21 1 2.3734 -1.3604 4.1867 22 6 1.1770 0.0092 5.3045 23 7 1.5190 -0.4986 6.4684 24 14 -0.0038 1.4545 5.2266 25 1 -1.3977 0.9505 5.1354 26 1 0.1444 2.2814 6.4511 27 1 0.3030 2.2806 4.0313 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9357 0.9044 -2.4335 32 1 1.8624 -1.9327 -5.1807 33 1 1.0392 -2.1440 -3.6171 34 1 -0.3786 -0.8707 -5.2033 35 1 0.0845 0.1363 -3.8108 36 1 1.4592 0.1277 -6.5361 37 1 0.3487 1.3833 -5.9379 38 1 2.7132 2.0582 -5.6150 39 1 1.8898 1.8468 -4.0509 40 1 5.2085 0.2415 -3.5344 41 1 4.9210 1.7093 -4.4997 42 1 4.0982 1.4974 -2.9359 43 1 1.5948 1.1063 2.7690 44 1 0.2201 -0.0209 2.6794 45 1 1.1577 -0.1229 7.2864 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:15 Heat of formation + Delta-G solvation = -132.640898 kcal Electronic energy + Delta-G solvation = -26009.978890 eV Core-core repulsion = 22346.918286 eV Total energy + Delta-G solvation = -3663.060604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62392 -38.50909 -36.10606 -35.09091 -34.06270 -33.44005 -33.09834 -32.76265 -30.17012 -29.70395 -26.63283 -24.89714 -23.18787 -22.87352 -21.78780 -21.11835 -19.34024 -18.06142 -17.72223 -17.28757 -16.34953 -15.81182 -15.53504 -15.38530 -15.26351 -14.92399 -14.43795 -14.33488 -14.17138 -13.85926 -13.69958 -13.19489 -12.89169 -12.80998 -12.71062 -12.50152 -12.26909 -12.21261 -12.04001 -11.87774 -11.83451 -11.57778 -11.24199 -11.15959 -11.10987 -10.90143 -10.86502 -10.65606 -10.39247 -10.31688 -10.23405 -9.97084 -9.79482 -9.30056 -9.18709 -8.82833 -6.29829 -4.38269 0.69824 2.51215 2.95133 3.12982 3.17669 3.21928 3.65757 4.20781 4.23992 4.32466 4.36683 4.39068 4.46526 4.73641 4.76427 4.84426 4.91561 4.98065 5.06175 5.11481 5.12289 5.24722 5.26439 5.28925 5.44191 5.46557 5.51669 5.58471 5.61585 5.69457 5.76767 5.84497 5.90726 5.92708 5.97534 6.01215 6.07940 6.15331 6.28784 6.35991 7.19291 7.27299 8.04164 8.05491 8.65097 9.23848 10.81471 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.003506 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.010394 B = 7985.036990 C = 8209.449594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.636 4.636 3 H 0.147 0.853 4 C 0.544 3.456 5 O -0.518 6.518 6 N -0.714 5.714 7 C 0.147 3.853 8 H 0.092 0.908 9 C -0.133 4.133 10 C -0.119 4.119 11 C -0.120 4.120 12 C -0.117 4.117 13 C -0.098 4.098 14 H 0.085 0.915 15 C -0.151 4.151 16 S 2.439 3.561 17 O -0.920 6.920 18 O -0.942 6.942 19 C -0.458 4.458 20 C -0.529 4.529 21 H 0.089 0.911 22 C 0.088 3.912 23 N -0.880 5.880 24 Si 0.881 3.119 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 7.792 -24.839 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.740 4.740 3 H 0.165 0.835 4 C 0.329 3.671 5 O -0.393 6.393 6 N -0.367 5.367 7 C 0.043 3.957 8 H 0.110 0.890 9 C -0.171 4.171 10 C -0.157 4.157 11 C -0.157 4.157 12 C -0.154 4.154 13 C -0.117 4.117 14 H 0.104 0.896 15 C -0.208 4.208 16 S 2.617 3.383 17 O -0.917 6.917 18 O -0.940 6.940 19 C -0.592 4.592 20 C -0.567 4.567 21 H 0.107 0.893 22 C -0.119 4.119 23 N -0.515 5.515 24 Si 0.707 3.293 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.187 1.187 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.736 6.239 -24.648 25.484 hybrid contribution -1.266 2.072 -0.076 2.429 sum -3.002 8.311 -24.724 26.255 Atomic orbital electron populations 1.21570 0.87974 1.04997 1.04580 1.30989 1.08868 1.15589 1.18590 0.83508 1.19381 0.77286 0.86813 0.83644 1.90871 1.48768 1.14922 1.84760 1.45977 1.67492 1.13949 1.09327 1.21042 0.95993 0.94512 0.84189 0.88990 1.21946 0.96429 0.98213 1.00560 1.21511 0.97906 0.96912 0.99364 1.21553 0.97430 0.98284 0.98469 1.21620 0.95846 0.97598 1.00350 1.21433 0.95615 0.96284 0.98393 0.89631 1.21859 0.97712 1.00748 1.00530 1.08085 0.76605 0.77276 0.76345 1.93501 1.81641 1.31741 1.84804 1.93487 1.28866 1.86679 1.84920 1.28109 1.08471 1.09383 1.13202 1.20099 1.31243 1.19069 0.86323 0.89330 1.24886 0.95625 0.96610 0.94739 1.69862 1.43020 1.40926 0.97725 0.86757 0.81637 0.82571 0.78358 1.19503 1.20581 1.18750 0.89522 0.90881 0.89896 0.76449 0.90979 0.90970 0.91976 0.91903 0.91873 0.92005 0.91519 0.92112 0.92158 0.92408 0.92374 0.89755 0.89876 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.88 37.16 0.33 -1.28 16 2 C -0.64 -9.34 3.15 -27.88 -0.09 -9.42 16 3 H 0.15 1.56 8.14 -51.92 -0.42 1.14 16 4 C 0.54 8.47 6.92 -10.98 -0.08 8.39 16 5 O -0.52 -10.33 15.14 -9.38 -0.14 -10.48 16 6 N -0.71 -7.87 3.54 -53.80 -0.19 -8.06 16 7 C 0.15 1.48 2.23 -67.93 -0.15 1.33 16 8 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 9 C -0.13 -1.24 5.60 -26.73 -0.15 -1.39 16 10 C -0.12 -0.91 5.77 -26.73 -0.15 -1.06 16 11 C -0.12 -0.74 5.92 -26.73 -0.16 -0.89 16 12 C -0.12 -0.71 5.03 -26.73 -0.13 -0.85 16 13 C -0.10 -0.72 2.51 -90.61 -0.23 -0.95 16 14 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 15 C -0.15 -1.18 9.04 37.16 0.34 -0.84 16 16 S 2.44 52.22 3.80 -107.50 -0.41 51.81 16 17 O -0.92 -22.88 17.21 -64.29 -1.11 -23.99 16 18 O -0.94 -23.03 18.10 -57.83 -1.05 -24.07 16 19 C -0.46 -10.07 4.02 36.00 0.14 -9.92 16 20 C -0.53 -14.90 9.68 -34.44 -0.33 -15.24 16 21 H 0.09 2.75 7.96 -52.49 -0.42 2.33 16 22 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 23 N -0.88 -26.22 13.96 55.43 0.77 -25.44 16 24 Si 0.88 19.90 27.47 -169.99 -4.67 15.23 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.26 -5.38 6.54 56.52 0.37 -5.01 16 28 H 0.09 0.94 6.39 -51.93 -0.33 0.61 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.40 3.30 6.65 -40.82 -0.27 3.03 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.51 7.60 -51.93 -0.39 0.11 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.36 6.50 -51.93 -0.34 0.02 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 43 H 0.08 1.64 7.20 -51.92 -0.37 1.27 16 44 H 0.08 1.60 6.20 -51.92 -0.32 1.28 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -36.91 363.73 -9.54 -46.45 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.47 Total: 2.83 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -0.76 Total: -29.76 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.58 Total: -33.50 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -2.29 Total: -58.54 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.67 Total: 15.23 kcal Atomic # 16 Polarization: 52.22 SS G_CDS: -0.41 Total: 51.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.91 -9.54 -46.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.195 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds