Wall clock time and date at job start Tue Mar 31 2020 12:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47382 * 2 1 4 4 C 1.50700 * 109.47262 * 239.99600 * 2 1 3 5 5 O 1.21285 * 119.99986 * 265.76000 * 4 2 1 6 6 N 1.34774 * 120.00256 * 85.76219 * 4 2 1 7 7 C 1.46921 * 120.63340 * 174.92011 * 6 4 2 8 8 C 1.53185 * 108.77799 * 126.36989 * 7 6 4 9 9 H 1.09004 * 109.49514 * 294.68285 * 8 7 6 10 10 C 1.53004 * 109.52670 * 174.60374 * 8 7 6 11 11 C 1.53038 * 109.31382 * 54.63347 * 8 7 6 12 12 C 1.53039 * 109.53851 * 298.63475 * 11 8 7 13 13 H 1.08996 * 109.50243 * 301.41591 * 12 11 8 14 14 C 1.53001 * 109.49952 * 181.31364 * 12 11 8 15 15 C 1.46928 * 120.62885 * 354.89709 * 6 4 2 16 16 S 1.81400 * 109.46648 * 119.99657 * 2 1 3 17 17 O 1.42094 * 108.58127 * 59.48907 * 16 2 1 18 18 O 1.42107 * 108.57804 * 190.51133 * 16 2 1 19 19 C 1.81395 * 101.92502 * 304.99756 * 16 2 1 20 20 C 1.50702 * 109.47585 * 179.97438 * 19 16 2 21 21 H 1.08001 * 119.99227 * 0.02562 * 20 19 16 22 22 C 1.37870 * 120.00215 * 179.97438 * 20 19 16 23 23 N 1.31518 * 120.00142 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00222 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46802 * 60.00112 * 24 22 20 26 26 H 1.48496 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46885 * 300.00407 * 24 22 20 28 28 H 1.08998 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46960 * 300.00554 * 1 2 3 30 30 H 1.09004 * 109.46778 * 60.00499 * 1 2 3 31 31 H 1.09004 * 109.58588 * 6.57884 * 7 6 4 32 32 H 1.09004 * 109.58440 * 246.15617 * 7 6 4 33 33 H 1.08998 * 109.46931 * 300.14403 * 10 8 7 34 34 H 1.09000 * 109.46950 * 60.14652 * 10 8 7 35 35 H 1.08994 * 109.46772 * 180.14206 * 10 8 7 36 36 H 1.09002 * 109.46264 * 178.62079 * 11 8 7 37 37 H 1.08999 * 109.44991 * 58.65316 * 11 8 7 38 38 H 1.09001 * 109.47091 * 300.16507 * 14 12 11 39 39 H 1.09000 * 109.47055 * 60.16493 * 14 12 11 40 40 H 1.08998 * 109.47400 * 180.16151 * 14 12 11 41 41 H 1.08992 * 109.58792 * 113.84408 * 15 6 4 42 42 H 1.09003 * 109.58299 * 353.41552 * 15 6 4 43 43 H 1.09000 * 109.47180 * 300.00407 * 19 16 2 44 44 H 1.09004 * 109.46791 * 59.99977 * 19 16 2 45 45 H 0.97003 * 120.00176 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3078 -1.8906 -1.1793 6 7 2.1757 -0.0346 -2.3876 7 6 2.7680 -0.6836 -3.5652 8 6 1.8075 -0.5292 -4.7485 9 1 0.8892 -1.0803 -4.5459 10 6 2.4646 -1.0801 -6.0157 11 6 1.4810 0.9529 -4.9453 12 6 0.7931 1.4964 -3.6909 13 1 -0.1156 0.9263 -3.4983 14 6 0.4376 2.9697 -3.9011 15 6 1.7422 1.3651 -2.4956 16 16 2.1346 -0.8551 1.4812 17 8 1.6407 -2.1874 1.4682 18 8 3.5341 -0.6350 1.5915 19 6 1.2997 0.0578 2.8079 20 6 1.6900 -0.5252 4.1417 21 1 2.3724 -1.3611 4.1866 22 6 1.1768 0.0091 5.3044 23 7 0.3461 1.0273 5.2496 24 14 1.6611 -0.7132 6.9576 25 1 3.1319 -0.6066 7.1325 26 1 0.9776 0.0341 8.0437 27 1 1.2585 -2.1416 7.0108 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.9259 -1.7421 -3.3583 32 1 3.7203 -0.2096 -3.8033 33 1 3.3835 -0.5295 -6.2172 34 1 2.6970 -2.1357 -5.8750 35 1 1.7815 -0.9675 -6.8575 36 1 0.8170 1.0678 -5.8021 37 1 2.4025 1.5071 -5.1233 38 1 1.3468 3.5387 -4.0951 39 1 -0.2376 3.0627 -4.7517 40 1 -0.0496 3.3571 -3.0064 41 1 2.6108 2.0060 -2.6465 42 1 1.2232 1.6583 -1.5830 43 1 1.5949 1.1064 2.7690 44 1 0.2201 -0.0208 2.6794 45 1 -0.0152 1.4030 6.0677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905267449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:15 Heat of formation + Delta-G solvation = -126.811493 kcal Electronic energy + Delta-G solvation = -25965.879806 eV Core-core repulsion = 22303.071984 eV Total energy + Delta-G solvation = -3662.807822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53444 -38.11154 -35.98115 -34.97822 -34.48652 -33.74018 -33.39436 -32.76264 -29.05047 -27.16679 -27.05857 -26.07116 -24.11332 -23.54293 -21.16961 -20.80178 -19.39416 -17.82722 -17.49805 -17.09547 -16.24204 -15.69965 -15.35055 -15.22329 -15.16352 -15.05916 -14.65506 -14.26968 -14.05115 -13.52121 -13.33532 -13.11141 -12.86420 -12.62700 -12.57035 -12.40776 -12.36593 -12.12335 -11.98649 -11.82112 -11.75782 -11.39129 -11.18500 -11.12767 -11.04666 -10.99886 -10.87017 -10.85321 -10.64204 -10.60157 -10.10960 -9.84494 -9.78158 -9.06206 -8.77556 -8.69626 -6.33455 -4.42441 0.86469 2.53022 2.82122 3.26413 3.27716 3.33855 3.75640 4.13347 4.26313 4.31009 4.45177 4.50877 4.56184 4.61427 4.84550 4.94328 5.00175 5.01932 5.09592 5.14346 5.22237 5.29266 5.33908 5.35066 5.35501 5.45084 5.54037 5.56605 5.60159 5.68183 5.75065 5.77045 5.84512 5.87450 5.92588 6.08172 6.13657 6.34408 6.62974 6.67034 7.18582 7.48775 7.74454 8.03249 8.58974 9.24511 10.78407 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.003452 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.720976 B = 8109.975190 C = 8797.899923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.633 4.633 3 H 0.147 0.853 4 C 0.547 3.453 5 O -0.521 6.521 6 N -0.608 5.608 7 C 0.113 3.887 8 C -0.108 4.108 9 H 0.075 0.925 10 C -0.144 4.144 11 C -0.109 4.109 12 C -0.108 4.108 13 H 0.076 0.924 14 C -0.146 4.146 15 C 0.104 3.896 16 S 2.414 3.586 17 O -0.929 6.929 18 O -0.952 6.952 19 C -0.402 4.402 20 C -0.529 4.529 21 H 0.072 0.928 22 C 0.076 3.924 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.268 1.268 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 5.690 -21.052 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.737 4.737 3 H 0.165 0.835 4 C 0.334 3.666 5 O -0.396 6.396 6 N -0.341 5.341 7 C -0.009 4.009 8 C -0.127 4.127 9 H 0.094 0.906 10 C -0.202 4.202 11 C -0.146 4.146 12 C -0.128 4.128 13 H 0.095 0.905 14 C -0.204 4.204 15 C -0.019 4.019 16 S 2.594 3.406 17 O -0.926 6.926 18 O -0.949 6.949 19 C -0.537 4.537 20 C -0.568 4.568 21 H 0.090 0.910 22 C -0.130 4.130 23 N -0.519 5.519 24 Si 0.731 3.269 25 H -0.194 1.194 26 H -0.207 1.207 27 H -0.193 1.193 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.586 4.465 -20.982 21.460 hybrid contribution -0.364 0.705 0.577 0.981 sum -0.950 5.170 -20.406 21.072 Atomic orbital electron populations 1.21611 0.87847 1.04935 1.04761 1.30964 1.08939 1.15535 1.18231 0.83518 1.19493 0.77051 0.86481 0.83574 1.90847 1.49831 1.14563 1.84373 1.47934 1.62040 1.13058 1.11032 1.21730 0.95375 1.00074 0.83771 1.21520 0.99510 0.96696 0.94997 0.90638 1.21752 1.00671 1.01236 0.96544 1.21665 1.00687 0.95066 0.97223 1.21529 0.98872 0.97293 0.95077 0.90510 1.21773 1.01694 0.94758 1.02129 1.21970 0.98401 0.81837 0.99711 1.08843 0.76911 0.77771 0.77048 1.93478 1.81654 1.32547 1.84918 1.93465 1.29576 1.86874 1.84992 1.27598 1.08441 1.08488 1.09196 1.20324 1.30315 1.17909 0.88273 0.91001 1.24908 0.94019 0.94415 0.99620 1.69931 1.29841 1.22900 1.29196 0.86412 0.79343 0.79643 0.81493 1.19379 1.20730 1.19335 0.90091 0.88941 0.91060 0.88640 0.91289 0.92452 0.92243 0.92333 0.91566 0.91625 0.92371 0.92257 0.92108 0.90978 0.88845 0.89689 0.89246 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.65 37.16 0.32 -1.52 16 2 C -0.63 -10.33 2.29 -27.88 -0.06 -10.39 16 3 H 0.15 1.88 6.71 -51.93 -0.35 1.53 16 4 C 0.55 9.49 6.80 -10.99 -0.07 9.42 16 5 O -0.52 -11.15 14.91 -9.39 -0.14 -11.29 16 6 N -0.61 -7.96 2.97 -172.77 -0.51 -8.48 16 7 C 0.11 1.28 5.73 -3.72 -0.02 1.26 16 8 C -0.11 -0.94 2.87 -90.50 -0.26 -1.20 16 9 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 10 C -0.14 -1.02 9.20 37.16 0.34 -0.67 16 11 C -0.11 -0.79 4.45 -26.69 -0.12 -0.91 16 12 C -0.11 -0.85 2.87 -90.50 -0.26 -1.11 16 13 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 14 C -0.15 -0.90 9.20 37.16 0.34 -0.56 16 15 C 0.10 1.00 5.26 -3.71 -0.02 0.98 16 16 S 2.41 54.06 3.81 -107.50 -0.41 53.65 16 17 O -0.93 -23.77 17.20 -64.29 -1.11 -24.87 16 18 O -0.95 -23.98 18.10 -57.83 -1.05 -25.02 16 19 C -0.40 -9.51 4.95 36.01 0.18 -9.33 16 20 C -0.53 -14.73 9.13 -34.44 -0.31 -15.04 16 21 H 0.07 2.01 7.71 -52.49 -0.40 1.61 16 22 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 23 N -0.88 -24.43 13.29 55.43 0.74 -23.69 16 24 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.19 6.39 -51.93 -0.33 0.86 16 30 H 0.07 0.76 7.15 -51.93 -0.37 0.38 16 31 H 0.10 1.27 7.00 -51.93 -0.36 0.90 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.86 4.84 -51.93 -0.25 0.61 16 43 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 44 H 0.09 2.00 6.77 -51.92 -0.35 1.65 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -35.99 366.86 -9.49 -45.49 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.48 Total: -0.28 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.22 Total: -32.17 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -2.29 Total: -61.19 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.41 Total: 53.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.99 -9.49 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.323 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds