Wall clock time and date at job start Tue Mar 31 2020 12:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47382 * 2 1 4 4 C 1.50700 * 109.47262 * 239.99600 * 2 1 3 5 5 O 1.21285 * 119.99986 * 265.76000 * 4 2 1 6 6 N 1.34774 * 120.00256 * 85.76219 * 4 2 1 7 7 C 1.46921 * 120.63340 * 174.92011 * 6 4 2 8 8 C 1.53185 * 108.77799 * 126.36989 * 7 6 4 9 9 H 1.09004 * 109.49514 * 294.68285 * 8 7 6 10 10 C 1.53004 * 109.52670 * 174.60374 * 8 7 6 11 11 C 1.53038 * 109.31382 * 54.63347 * 8 7 6 12 12 C 1.53039 * 109.53851 * 298.63475 * 11 8 7 13 13 H 1.08996 * 109.50243 * 301.41591 * 12 11 8 14 14 C 1.53001 * 109.49952 * 181.31364 * 12 11 8 15 15 C 1.46928 * 120.62885 * 354.89709 * 6 4 2 16 16 S 1.81400 * 109.46648 * 119.99657 * 2 1 3 17 17 O 1.42094 * 108.58127 * 59.48907 * 16 2 1 18 18 O 1.42107 * 108.57804 * 190.51133 * 16 2 1 19 19 C 1.81395 * 101.92502 * 304.99756 * 16 2 1 20 20 C 1.50702 * 109.47585 * 179.97438 * 19 16 2 21 21 H 1.08001 * 119.99227 * 0.02562 * 20 19 16 22 22 C 1.37870 * 120.00215 * 179.97438 * 20 19 16 23 23 N 1.31518 * 120.00142 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00222 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46802 * 60.00112 * 24 22 20 26 26 H 1.48496 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46885 * 300.00407 * 24 22 20 28 28 H 1.08998 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46960 * 300.00554 * 1 2 3 30 30 H 1.09004 * 109.46778 * 60.00499 * 1 2 3 31 31 H 1.09004 * 109.58588 * 6.57884 * 7 6 4 32 32 H 1.09004 * 109.58440 * 246.15617 * 7 6 4 33 33 H 1.08998 * 109.46931 * 300.14403 * 10 8 7 34 34 H 1.09000 * 109.46950 * 60.14652 * 10 8 7 35 35 H 1.08994 * 109.46772 * 180.14206 * 10 8 7 36 36 H 1.09002 * 109.46264 * 178.62079 * 11 8 7 37 37 H 1.08999 * 109.44991 * 58.65316 * 11 8 7 38 38 H 1.09001 * 109.47091 * 300.16507 * 14 12 11 39 39 H 1.09000 * 109.47055 * 60.16493 * 14 12 11 40 40 H 1.08998 * 109.47400 * 180.16151 * 14 12 11 41 41 H 1.08992 * 109.58792 * 113.84408 * 15 6 4 42 42 H 1.09003 * 109.58299 * 353.41552 * 15 6 4 43 43 H 1.09000 * 109.47180 * 300.00407 * 19 16 2 44 44 H 1.09004 * 109.46791 * 59.99977 * 19 16 2 45 45 H 0.97003 * 120.00176 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3078 -1.8906 -1.1793 6 7 2.1757 -0.0346 -2.3876 7 6 2.7680 -0.6836 -3.5652 8 6 1.8075 -0.5292 -4.7485 9 1 0.8892 -1.0803 -4.5459 10 6 2.4646 -1.0801 -6.0157 11 6 1.4810 0.9529 -4.9453 12 6 0.7931 1.4964 -3.6909 13 1 -0.1156 0.9263 -3.4983 14 6 0.4376 2.9697 -3.9011 15 6 1.7422 1.3651 -2.4956 16 16 2.1346 -0.8551 1.4812 17 8 1.6407 -2.1874 1.4682 18 8 3.5341 -0.6350 1.5915 19 6 1.2997 0.0578 2.8079 20 6 1.6900 -0.5252 4.1417 21 1 2.3724 -1.3611 4.1866 22 6 1.1768 0.0091 5.3044 23 7 0.3461 1.0273 5.2496 24 14 1.6611 -0.7132 6.9576 25 1 3.1319 -0.6066 7.1325 26 1 0.9776 0.0341 8.0437 27 1 1.2585 -2.1416 7.0108 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.9259 -1.7421 -3.3583 32 1 3.7203 -0.2096 -3.8033 33 1 3.3835 -0.5295 -6.2172 34 1 2.6970 -2.1357 -5.8750 35 1 1.7815 -0.9675 -6.8575 36 1 0.8170 1.0678 -5.8021 37 1 2.4025 1.5071 -5.1233 38 1 1.3468 3.5387 -4.0951 39 1 -0.2376 3.0627 -4.7517 40 1 -0.0496 3.3571 -3.0064 41 1 2.6108 2.0060 -2.6465 42 1 1.2232 1.6583 -1.5830 43 1 1.5949 1.1064 2.7690 44 1 0.2201 -0.0208 2.6794 45 1 -0.0152 1.4030 6.0677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905267449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:14 Heat of formation + Delta-G solvation = -152.013943 kcal Electronic energy + Delta-G solvation = -25966.972666 eV Core-core repulsion = 22303.071984 eV Total energy + Delta-G solvation = -3663.900683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64809 -39.13030 -37.87173 -36.86423 -35.62232 -35.33289 -34.52531 -33.90063 -31.01747 -27.97189 -27.59913 -27.04549 -25.56347 -25.26303 -21.84134 -21.73425 -20.45362 -19.50676 -18.97584 -18.76002 -17.70386 -17.31705 -16.89398 -16.58116 -16.33264 -16.03080 -15.86140 -15.80119 -15.17709 -14.60420 -14.46098 -14.14590 -13.98487 -13.95593 -13.77552 -13.44091 -13.38150 -13.24493 -13.08833 -12.99004 -12.91088 -12.87643 -12.84451 -12.70130 -12.51548 -12.48692 -11.87567 -11.81318 -11.80832 -11.65842 -11.53450 -11.32868 -11.10499 -10.85431 -10.74951 -9.80538 -8.40691 -6.56265 -0.89313 1.21627 1.38899 1.41462 1.49720 1.68169 2.07674 2.32403 2.82738 2.92365 3.12010 3.24112 3.63570 3.70246 3.80109 3.82196 3.84393 3.93424 4.25346 4.31045 4.48628 4.50750 4.55932 4.59272 4.64045 4.69125 4.74072 4.75232 4.81604 4.83120 4.86831 5.04121 5.05503 5.09048 5.18676 5.24546 5.28938 5.37125 5.38956 5.45858 5.53286 5.74481 6.06729 6.50338 6.77303 7.13612 8.71276 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.003452 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.720976 B = 8109.975190 C = 8797.899923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.602 4.602 3 H 0.190 0.810 4 C 0.535 3.465 5 O -0.575 6.575 6 N -0.594 5.594 7 C 0.104 3.896 8 C -0.101 4.101 9 H 0.060 0.940 10 C -0.141 4.141 11 C -0.105 4.105 12 C -0.104 4.104 13 H 0.069 0.931 14 C -0.141 4.141 15 C 0.088 3.912 16 S 2.413 3.587 17 O -0.975 6.975 18 O -0.992 6.992 19 C -0.407 4.407 20 C -0.569 4.569 21 H 0.054 0.946 22 C 0.033 3.967 23 N -0.901 5.901 24 Si 0.956 3.044 25 H -0.266 1.266 26 H -0.263 1.263 27 H -0.267 1.267 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 8.283 -22.836 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.713 4.713 3 H 0.207 0.793 4 C 0.321 3.679 5 O -0.455 6.455 6 N -0.325 5.325 7 C -0.018 4.018 8 C -0.121 4.121 9 H 0.078 0.922 10 C -0.199 4.199 11 C -0.143 4.143 12 C -0.123 4.123 13 H 0.088 0.912 14 C -0.199 4.199 15 C -0.033 4.033 16 S 2.601 3.399 17 O -0.972 6.972 18 O -0.989 6.989 19 C -0.541 4.541 20 C -0.607 4.607 21 H 0.072 0.928 22 C -0.171 4.171 23 N -0.538 5.538 24 Si 0.779 3.221 25 H -0.191 1.191 26 H -0.188 1.188 27 H -0.192 1.192 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.374 7.077 -22.733 23.849 hybrid contribution -0.133 -0.028 0.961 0.971 sum -1.507 7.049 -21.772 22.935 Atomic orbital electron populations 1.21784 0.85486 1.04877 1.07412 1.30528 1.10788 1.16279 1.13734 0.79265 1.19662 0.77224 0.86080 0.84898 1.90833 1.52568 1.16860 1.85262 1.48061 1.60240 1.14268 1.09964 1.21950 0.97053 0.98684 0.84097 1.21466 0.98131 0.98118 0.94352 0.92171 1.21735 1.01346 1.00761 0.96028 1.21670 1.01533 0.93512 0.97547 1.21504 0.97974 0.98574 0.94274 0.91224 1.21745 1.02290 0.93226 1.02658 1.22411 0.99934 0.79674 1.01257 1.08234 0.75966 0.77290 0.78447 1.93418 1.81961 1.35477 1.86346 1.93405 1.31798 1.87284 1.86461 1.27550 1.09135 1.08875 1.08545 1.20676 1.30885 1.18260 0.90891 0.92790 1.25666 0.93904 0.94773 1.02716 1.69962 1.30071 1.23341 1.30397 0.85626 0.79300 0.79153 0.78029 1.19085 1.18750 1.19223 0.91647 0.87759 0.86869 0.91413 0.89467 0.91385 0.93143 0.90963 0.90067 0.90497 0.91586 0.91459 0.91831 0.88967 0.87988 0.88557 0.88226 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.65 71.98 0.62 -2.89 16 2 C -0.60 -18.95 2.29 29.85 0.07 -18.88 16 3 H 0.19 4.27 6.71 -2.39 -0.02 4.26 16 4 C 0.53 18.38 6.80 87.66 0.60 18.97 16 5 O -0.58 -25.64 14.91 11.24 0.17 -25.48 16 6 N -0.59 -14.59 2.97 -818.91 -2.43 -17.02 16 7 C 0.10 2.27 5.73 86.36 0.49 2.76 16 8 C -0.10 -1.58 2.87 -10.72 -0.03 -1.61 16 9 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 10 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 11 C -0.11 -1.15 4.45 30.62 0.14 -1.02 16 12 C -0.10 -1.24 2.87 -10.72 -0.03 -1.27 16 13 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 14 C -0.14 -1.14 9.20 71.98 0.66 -0.48 16 15 C 0.09 1.39 5.26 86.36 0.45 1.85 16 16 S 2.41 111.27 3.81 -56.49 -0.22 111.06 16 17 O -0.97 -52.53 17.20 -121.20 -2.08 -54.62 16 18 O -0.99 -51.86 18.10 -127.37 -2.31 -54.17 16 19 C -0.41 -19.49 4.95 71.24 0.35 -19.13 16 20 C -0.57 -32.45 9.13 25.60 0.23 -32.22 16 21 H 0.05 3.17 7.71 -2.91 -0.02 3.15 16 22 C 0.03 1.83 5.46 84.65 0.46 2.29 16 23 N -0.90 -49.50 13.29 21.45 0.28 -49.21 16 24 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.10 2.45 6.39 -2.39 -0.02 2.43 16 30 H 0.11 1.98 7.15 -2.39 -0.02 1.96 16 31 H 0.07 1.87 7.00 -2.39 -0.02 1.86 16 32 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.10 1.43 4.84 -2.39 -0.01 1.41 16 43 H 0.10 4.32 8.14 -2.39 -0.02 4.30 16 44 H 0.10 4.49 6.77 -2.39 -0.02 4.47 16 45 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -82.05 366.86 1.09 -80.97 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.96 Total: 15.99 kcal Atomic # 6 Polarization: -57.34 SS G_CDS: 4.68 Total: -52.66 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -2.15 Total: -66.23 kcal Atomic # 8 Polarization: -130.04 SS G_CDS: -4.22 Total: -134.26 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 111.27 SS G_CDS: -0.22 Total: 111.06 kcal Total: -82.05 1.09 -80.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.046 kcal (2) G-P(sol) polarization free energy of solvation -82.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds