Wall clock time and date at job start Tue Mar 31 2020 12:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46967 * 2 1 4 4 C 1.50700 * 109.47459 * 240.00088 * 2 1 3 5 5 O 1.21275 * 120.00196 * 265.00045 * 4 2 1 6 6 N 1.34783 * 120.00160 * 84.99412 * 4 2 1 7 7 C 1.46928 * 120.62561 * 359.72816 * 6 4 2 8 8 C 1.53628 * 108.54377 * 126.36764 * 7 6 4 9 9 H 1.08995 * 109.65727 * 294.84488 * 8 7 6 10 10 C 1.53004 * 109.43130 * 174.71768 * 8 7 6 11 11 C 1.53036 * 109.24133 * 54.85188 * 8 7 6 12 12 C 1.53047 * 109.54075 * 298.51125 * 11 8 7 13 13 H 1.08997 * 109.52383 * 181.33368 * 12 11 8 14 14 C 1.53003 * 109.49589 * 301.41792 * 12 11 8 15 15 C 1.46921 * 120.63253 * 180.02562 * 6 4 2 16 16 S 1.81398 * 109.47206 * 119.99766 * 2 1 3 17 17 O 1.42105 * 108.57879 * 190.51327 * 16 2 1 18 18 O 1.42097 * 108.57629 * 59.49088 * 16 2 1 19 19 C 1.81391 * 101.92304 * 305.00246 * 16 2 1 20 20 C 1.50695 * 109.47313 * 180.02562 * 19 16 2 21 21 H 1.08001 * 120.00083 * 359.97438 * 20 19 16 22 22 C 1.37879 * 120.00122 * 180.02562 * 20 19 16 23 23 N 1.31516 * 120.00112 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99881 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47163 * 60.00084 * 24 22 20 26 26 H 1.48499 * 109.47051 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47293 * 299.99642 * 24 22 20 28 28 H 1.09000 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47344 * 299.99905 * 1 2 3 30 30 H 1.09001 * 109.47037 * 59.99958 * 1 2 3 31 31 H 1.09005 * 109.58270 * 246.19321 * 7 6 4 32 32 H 1.08998 * 109.59145 * 6.61894 * 7 6 4 33 33 H 1.08996 * 109.47274 * 300.28808 * 10 8 7 34 34 H 1.09004 * 109.46395 * 60.29040 * 10 8 7 35 35 H 1.08998 * 109.46488 * 180.28534 * 10 8 7 36 36 H 1.08996 * 109.46034 * 178.49424 * 11 8 7 37 37 H 1.09002 * 109.46204 * 58.52985 * 11 8 7 38 38 H 1.09001 * 109.46949 * 179.83763 * 14 12 11 39 39 H 1.09001 * 109.47120 * 299.83702 * 14 12 11 40 40 H 1.09003 * 109.47201 * 59.83655 * 14 12 11 41 41 H 1.09000 * 109.58377 * 353.37117 * 15 6 4 42 42 H 1.08992 * 109.58811 * 113.80108 * 15 6 4 43 43 H 1.09003 * 109.47583 * 300.00163 * 19 16 2 44 44 H 1.09003 * 109.47643 * 59.99714 * 19 16 2 45 45 H 0.97002 * 119.99619 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3209 -1.8871 -1.1760 6 7 2.1611 -0.0380 -2.3915 7 6 1.8099 1.3862 -2.4745 8 6 3.0108 2.1529 -3.0492 9 1 3.8477 2.0984 -2.3531 10 6 2.6228 3.6167 -3.2679 11 6 3.4162 1.5268 -4.3855 12 6 3.8358 0.0720 -4.1629 13 1 4.1470 -0.3666 -5.1110 14 6 4.9995 0.0223 -3.1707 15 6 2.6490 -0.7170 -3.5996 16 16 2.1347 -0.8551 1.4811 17 8 3.5343 -0.6349 1.5914 18 8 1.6409 -2.1874 1.4680 19 6 1.2998 0.0577 2.8079 20 6 1.6912 -0.5246 4.1415 21 1 2.3737 -1.3604 4.1865 22 6 1.1773 0.0091 5.3043 23 7 0.3459 1.0267 5.2496 24 14 1.6619 -0.7131 6.9575 25 1 3.1327 -0.6054 7.1327 26 1 0.9785 0.0342 8.0437 27 1 1.2604 -2.1417 7.0104 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.9462 1.5121 -3.1276 32 1 1.5760 1.7636 -1.4791 33 1 1.7851 3.6706 -3.9631 34 1 2.3342 4.0621 -2.3158 35 1 3.4729 4.1600 -3.6803 36 1 4.2511 2.0847 -4.8094 37 1 2.5711 1.5598 -5.0732 38 1 5.2961 -1.0143 -3.0103 39 1 5.8432 0.5837 -3.5720 40 1 4.6881 0.4620 -2.2232 41 1 2.9692 -1.7277 -3.3466 42 1 1.8523 -0.7588 -4.3422 43 1 1.5948 1.1063 2.7690 44 1 0.2202 -0.0209 2.6794 45 1 -0.0154 1.4023 6.0677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905267450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:18 Heat of formation + Delta-G solvation = -147.045606 kcal Electronic energy + Delta-G solvation = -26316.533931 eV Core-core repulsion = 22652.848691 eV Total energy + Delta-G solvation = -3663.685239 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70307 -39.21090 -37.86734 -36.86073 -35.56385 -35.27458 -34.43093 -33.64614 -31.01652 -28.19856 -27.57459 -26.97766 -25.56430 -25.36110 -22.64452 -21.42869 -19.75409 -19.50853 -18.98258 -18.77464 -17.62819 -17.29785 -16.99593 -16.47403 -16.44020 -16.01310 -15.93277 -15.24072 -15.03575 -14.96222 -14.55888 -14.44323 -14.13265 -14.10311 -13.70657 -13.44790 -13.38052 -13.14860 -13.06907 -12.96555 -12.91323 -12.83237 -12.70177 -12.62313 -12.50454 -12.49223 -12.00409 -11.83654 -11.81019 -11.62500 -11.42299 -11.35533 -10.99859 -10.82953 -10.74990 -9.75030 -8.40902 -6.56522 -0.88748 1.26330 1.38602 1.41157 1.49436 1.71364 2.08282 2.32213 2.83870 2.92099 3.12151 3.24998 3.62907 3.69719 3.81969 3.85909 3.87057 3.94027 4.18207 4.38062 4.46943 4.55921 4.57273 4.62375 4.66509 4.68555 4.73461 4.75209 4.77156 4.84588 4.90736 5.04233 5.06572 5.09267 5.12330 5.20392 5.30396 5.36722 5.40814 5.48755 5.53801 5.74182 6.09947 6.49977 6.81566 7.13334 8.71054 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.003740 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.806481 B = 7484.928872 C = 7863.239530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.603 4.603 3 H 0.187 0.813 4 C 0.535 3.465 5 O -0.575 6.575 6 N -0.590 5.590 7 C 0.093 3.907 8 C -0.115 4.115 9 H 0.063 0.937 10 C -0.141 4.141 11 C -0.103 4.103 12 C -0.100 4.100 13 H 0.104 0.896 14 C -0.153 4.153 15 C 0.105 3.895 16 S 2.413 3.587 17 O -0.993 6.993 18 O -0.975 6.975 19 C -0.407 4.407 20 C -0.569 4.569 21 H 0.053 0.947 22 C 0.034 3.966 23 N -0.901 5.901 24 Si 0.956 3.044 25 H -0.267 1.267 26 H -0.263 1.263 27 H -0.267 1.267 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 9.070 -21.895 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.714 4.714 3 H 0.204 0.796 4 C 0.321 3.679 5 O -0.456 6.456 6 N -0.321 5.321 7 C -0.028 4.028 8 C -0.134 4.134 9 H 0.082 0.918 10 C -0.199 4.199 11 C -0.140 4.140 12 C -0.119 4.119 13 H 0.122 0.878 14 C -0.210 4.210 15 C -0.017 4.017 16 S 2.600 3.400 17 O -0.990 6.990 18 O -0.972 6.972 19 C -0.541 4.541 20 C -0.607 4.607 21 H 0.072 0.928 22 C -0.170 4.170 23 N -0.537 5.537 24 Si 0.779 3.221 25 H -0.191 1.191 26 H -0.187 1.187 27 H -0.192 1.192 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.914 7.859 -21.797 23.188 hybrid contribution -0.015 0.000 1.082 1.082 sum 0.899 7.859 -20.715 22.174 Atomic orbital electron populations 1.21758 0.85316 1.04877 1.07473 1.30532 1.10931 1.16105 1.13858 0.79578 1.19597 0.77343 0.86139 0.84777 1.90831 1.52213 1.17330 1.85211 1.48013 1.63484 1.12044 1.08517 1.22473 0.98828 0.77503 1.04044 1.21691 0.97371 0.96220 0.98116 0.91843 1.21741 1.02384 0.93218 1.02519 1.21610 1.02442 0.93485 0.96490 1.21528 0.93728 0.97306 0.99377 0.87771 1.21902 0.98818 1.01015 0.99280 1.21944 0.97562 0.96639 0.85571 1.08240 0.75965 0.77302 0.78491 1.93403 1.31813 1.87284 1.86480 1.93417 1.81966 1.35471 1.86375 1.27551 1.09129 1.08829 1.08637 1.20669 1.30853 1.18304 0.90898 0.92847 1.25666 0.93883 0.94771 1.02705 1.69963 1.30020 1.23354 1.30384 0.85629 0.79281 0.79171 0.78038 1.19130 1.18704 1.19204 0.91621 0.87988 0.86589 0.87813 0.88562 0.91001 0.92241 0.91777 0.90332 0.89739 0.94415 0.90917 0.94346 0.91486 0.88539 0.88690 0.88254 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.79 71.98 0.63 -2.81 16 2 C -0.60 -19.01 2.31 29.85 0.07 -18.94 16 3 H 0.19 4.32 6.25 -2.39 -0.01 4.31 16 4 C 0.53 18.15 6.82 87.66 0.60 18.75 16 5 O -0.58 -25.44 14.89 11.26 0.17 -25.27 16 6 N -0.59 -13.95 2.40 -817.99 -1.97 -15.92 16 7 C 0.09 1.41 5.30 86.51 0.46 1.87 16 8 C -0.11 -1.53 2.54 -10.57 -0.03 -1.56 16 9 H 0.06 1.12 6.33 -2.39 -0.02 1.11 16 10 C -0.14 -1.30 9.20 71.98 0.66 -0.63 16 11 C -0.10 -1.14 4.71 30.62 0.14 -0.99 16 12 C -0.10 -1.57 3.21 -10.70 -0.03 -1.60 16 13 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 14 C -0.15 -3.25 8.71 71.98 0.63 -2.62 16 15 C 0.10 2.14 5.83 86.38 0.50 2.65 16 16 S 2.41 111.83 3.80 -56.49 -0.21 111.62 16 17 O -0.99 -52.19 18.10 -127.37 -2.31 -54.49 16 18 O -0.98 -52.70 17.21 -121.20 -2.09 -54.79 16 19 C -0.41 -19.63 4.95 71.23 0.35 -19.28 16 20 C -0.57 -32.59 9.13 25.60 0.23 -32.35 16 21 H 0.05 3.15 7.71 -2.91 -0.02 3.13 16 22 C 0.03 1.85 5.46 84.65 0.46 2.32 16 23 N -0.90 -49.57 13.29 21.45 0.28 -49.28 16 24 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.10 2.40 6.39 -2.39 -0.02 2.39 16 30 H 0.12 1.93 7.76 -2.39 -0.02 1.92 16 31 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.10 1.37 5.31 -2.39 -0.01 1.36 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.04 0.98 5.97 -2.39 -0.01 0.97 16 41 H 0.07 1.79 7.01 -2.39 -0.02 1.77 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.10 4.30 8.14 -2.39 -0.02 4.28 16 44 H 0.10 4.51 6.77 -2.39 -0.02 4.49 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -82.71 363.02 1.56 -81.15 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.97 Total: 16.96 kcal Atomic # 6 Polarization: -59.89 SS G_CDS: 4.68 Total: -55.20 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -1.68 Total: -65.20 kcal Atomic # 8 Polarization: -130.33 SS G_CDS: -4.22 Total: -134.55 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 111.83 SS G_CDS: -0.21 Total: 111.62 kcal Total: -82.71 1.56 -81.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.896 kcal (2) G-P(sol) polarization free energy of solvation -82.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds