Wall clock time and date at job start Tue Mar 31 2020 12:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47102 * 2 1 4 4 C 1.50701 * 109.47081 * 120.00266 * 2 1 3 5 5 O 1.21277 * 119.99810 * 99.99953 * 4 2 1 6 6 N 1.34773 * 119.99638 * 279.99707 * 4 2 1 7 7 C 1.46926 * 120.62904 * 180.02562 * 6 4 2 8 8 C 1.53192 * 108.77820 * 233.58715 * 7 6 4 9 9 H 1.08995 * 109.49883 * 185.40976 * 8 7 6 10 10 C 1.53003 * 109.49364 * 65.31637 * 8 7 6 11 11 C 1.53033 * 109.31270 * 305.36633 * 8 7 6 12 12 C 1.53041 * 109.53898 * 61.36218 * 11 8 7 13 13 H 1.08994 * 109.52286 * 58.60459 * 12 11 8 14 14 C 1.53004 * 109.49660 * 178.68381 * 12 11 8 15 15 C 1.46927 * 120.63516 * 359.97438 * 6 4 2 16 16 S 1.81406 * 109.46974 * 240.00260 * 2 1 3 17 17 O 1.42103 * 108.57704 * 174.48595 * 16 2 1 18 18 O 1.42101 * 108.57800 * 305.51259 * 16 2 1 19 19 C 1.81396 * 101.92295 * 60.00027 * 16 2 1 20 20 C 1.50695 * 109.47100 * 180.02562 * 19 16 2 21 21 H 1.07997 * 119.99945 * 359.97438 * 20 19 16 22 22 C 1.37881 * 119.99993 * 180.02562 * 20 19 16 23 23 N 1.31513 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99916 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47176 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47035 * 120.00052 * 24 22 20 27 27 H 1.48492 * 109.47009 * 239.99583 * 24 22 20 28 28 H 1.09003 * 109.47174 * 59.99787 * 1 2 3 29 29 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46918 * 299.99900 * 1 2 3 31 31 H 1.09006 * 109.58406 * 353.37631 * 7 6 4 32 32 H 1.09002 * 109.59019 * 113.79619 * 7 6 4 33 33 H 1.08996 * 109.47372 * 60.00238 * 10 8 7 34 34 H 1.08996 * 109.46993 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47158 * 300.00027 * 10 8 7 36 36 H 1.09002 * 109.45686 * 301.34174 * 11 8 7 37 37 H 1.09001 * 109.46425 * 181.38151 * 11 8 7 38 38 H 1.09004 * 109.46885 * 179.83832 * 14 12 11 39 39 H 1.08992 * 109.47045 * 299.83708 * 14 12 11 40 40 H 1.09000 * 109.47338 * 59.84089 * 14 12 11 41 41 H 1.08997 * 109.58859 * 246.20187 * 15 6 4 42 42 H 1.09000 * 109.58547 * 6.62605 * 15 6 4 43 43 H 1.09008 * 109.47199 * 299.99979 * 19 16 2 44 44 H 1.09002 * 109.47068 * 59.99653 * 19 16 2 45 45 H 0.96997 * 120.00098 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4063 -1.8617 1.1556 6 7 2.0658 -0.0664 2.4139 7 6 2.5534 -0.7455 3.6221 8 6 1.4893 -0.6272 4.7177 9 1 1.8770 -1.0426 5.6478 10 6 0.2357 -1.3972 4.2972 11 6 1.1374 0.8477 4.9244 12 6 0.5623 1.4232 3.6282 13 1 -0.3222 0.8559 3.3387 14 6 0.1805 2.8888 3.8454 15 6 1.6166 1.3284 2.5201 16 16 2.1346 -0.8551 -1.4812 17 8 3.5496 -0.7330 -1.5286 18 8 1.5478 -2.1484 -1.5286 19 6 1.4228 0.1515 -2.8118 20 6 1.8269 -0.4210 -4.1459 21 1 2.4500 -1.3021 -4.1890 22 6 1.4021 0.1806 -5.3116 23 7 0.6438 1.2538 -5.2591 24 14 1.9036 -0.5288 -6.9653 25 1 2.7511 -1.7295 -6.7524 26 1 0.6886 -0.9103 -7.7292 27 1 2.6691 0.4891 -7.7288 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.7356 -1.7974 3.4017 32 1 3.4776 -0.2751 3.9580 33 1 0.4874 -2.4470 4.1473 34 1 -0.5213 -1.3124 5.0768 35 1 -0.1521 -0.9802 3.3677 36 1 2.0358 1.4001 5.1998 37 1 0.3983 0.9367 5.7205 38 1 -0.2264 3.2991 2.9211 39 1 -0.5692 2.9560 4.6337 40 1 1.0651 3.4556 4.1360 41 1 2.4644 1.9676 2.7663 42 1 1.1806 1.6451 1.5726 43 1 0.3359 0.1471 -2.7292 44 1 1.7893 1.1748 -2.7291 45 1 0.3446 1.6768 -6.0791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905267452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:27 Heat of formation + Delta-G solvation = -123.558741 kcal Electronic energy + Delta-G solvation = -26288.058647 eV Core-core repulsion = 22625.391875 eV Total energy + Delta-G solvation = -3662.666772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66886 -38.18206 -35.97936 -34.96745 -34.32059 -33.68586 -33.36651 -32.57370 -29.04423 -27.29525 -26.99553 -26.06277 -24.26230 -23.55859 -21.87421 -20.44101 -18.79319 -17.83298 -17.54381 -17.08763 -16.16237 -15.77538 -15.48251 -15.23250 -15.14804 -14.70561 -14.40801 -14.35628 -14.22752 -13.92625 -13.56248 -13.11666 -12.82363 -12.63325 -12.42180 -12.31220 -12.26549 -11.99224 -11.85555 -11.82154 -11.74404 -11.36812 -11.30754 -11.13483 -11.04418 -10.99363 -10.89853 -10.75695 -10.59052 -10.56892 -10.10464 -9.83094 -9.74515 -9.06660 -8.76158 -8.71264 -6.33946 -4.42621 0.87383 2.53734 2.83339 3.21785 3.28891 3.37558 3.76506 4.13805 4.26920 4.32975 4.46384 4.50892 4.57468 4.66997 4.86135 4.88865 5.00897 5.01812 5.10652 5.13082 5.23445 5.33882 5.36488 5.38193 5.44790 5.46714 5.54303 5.58641 5.66769 5.70271 5.74134 5.77860 5.85039 5.92026 5.96599 6.10149 6.16760 6.36344 6.62844 6.66917 7.19067 7.49413 7.74126 8.03478 8.59372 9.24433 10.78024 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.003632 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.295949 B = 7706.865344 C = 8285.527681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.634 4.634 3 H 0.148 0.852 4 C 0.550 3.450 5 O -0.524 6.524 6 N -0.603 5.603 7 C 0.112 3.888 8 C -0.107 4.107 9 H 0.082 0.918 10 C -0.148 4.148 11 C -0.109 4.109 12 C -0.111 4.111 13 H 0.081 0.919 14 C -0.146 4.146 15 C 0.104 3.896 16 S 2.418 3.582 17 O -0.950 6.950 18 O -0.933 6.933 19 C -0.404 4.404 20 C -0.528 4.528 21 H 0.073 0.927 22 C 0.076 3.924 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.278 1.278 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 5.067 20.673 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.737 4.737 3 H 0.166 0.834 4 C 0.337 3.663 5 O -0.400 6.400 6 N -0.337 5.337 7 C -0.010 4.010 8 C -0.126 4.126 9 H 0.100 0.900 10 C -0.205 4.205 11 C -0.146 4.146 12 C -0.130 4.130 13 H 0.099 0.901 14 C -0.204 4.204 15 C -0.019 4.019 16 S 2.598 3.402 17 O -0.947 6.947 18 O -0.930 6.930 19 C -0.539 4.539 20 C -0.567 4.567 21 H 0.091 0.909 22 C -0.130 4.130 23 N -0.518 5.518 24 Si 0.731 3.269 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.203 1.203 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.309 3.820 20.602 21.080 hybrid contribution -0.303 0.772 -0.568 1.005 sum -2.611 4.593 20.034 20.719 Atomic orbital electron populations 1.21606 0.87956 1.04907 1.04713 1.30980 1.08859 1.15650 1.18255 0.83411 1.19445 0.77272 0.86020 0.83604 1.90828 1.47595 1.16611 1.84997 1.47870 1.64400 1.13453 1.07943 1.21712 0.95835 0.99691 0.83794 1.21505 0.96521 0.96143 0.98416 0.89993 1.21857 0.96928 1.00240 1.01515 1.21616 1.00994 0.95028 0.96997 1.21594 0.98799 0.97200 0.95435 0.90059 1.21781 1.01572 0.94945 1.02108 1.21987 0.97603 0.81970 1.00372 1.08749 0.76426 0.78088 0.76956 1.93460 1.28439 1.87410 1.85367 1.93464 1.79097 1.35598 1.84833 1.27615 1.08011 1.08913 1.09364 1.20408 1.34375 1.13810 0.88084 0.90884 1.24917 0.93991 0.94453 0.99658 1.69946 1.33711 1.19312 1.28872 0.86294 0.78823 0.79591 0.82157 1.18874 1.20312 1.20339 0.89097 0.90089 0.90998 0.88596 0.91332 0.92463 0.92763 0.92186 0.91698 0.91586 0.92140 0.92290 0.92437 0.90991 0.88838 0.89330 0.89706 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.65 37.16 0.32 -1.49 16 2 C -0.63 -10.25 2.24 -27.88 -0.06 -10.32 16 3 H 0.15 1.88 6.80 -51.92 -0.35 1.52 16 4 C 0.55 9.40 6.88 -10.99 -0.08 9.32 16 5 O -0.52 -11.14 15.06 -3.35 -0.05 -11.19 16 6 N -0.60 -7.69 2.41 -172.74 -0.42 -8.11 16 7 C 0.11 1.24 5.83 -3.71 -0.02 1.22 16 8 C -0.11 -0.90 3.21 -90.50 -0.29 -1.19 16 9 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 10 C -0.15 -1.41 8.71 37.16 0.32 -1.08 16 11 C -0.11 -0.77 4.71 -26.69 -0.13 -0.90 16 12 C -0.11 -0.85 2.53 -90.47 -0.23 -1.08 16 13 H 0.08 0.68 6.33 -51.93 -0.33 0.35 16 14 C -0.15 -0.90 9.20 37.16 0.34 -0.56 16 15 C 0.10 0.98 5.09 -3.68 -0.02 0.96 16 16 S 2.42 54.13 3.59 -107.50 -0.39 53.74 16 17 O -0.95 -24.11 18.10 -57.83 -1.05 -25.16 16 18 O -0.93 -23.71 17.40 -62.66 -1.09 -24.80 16 19 C -0.40 -9.55 5.11 36.00 0.18 -9.37 16 20 C -0.53 -14.69 9.13 -34.44 -0.31 -15.01 16 21 H 0.07 2.05 7.71 -52.49 -0.40 1.65 16 22 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 23 N -0.88 -24.40 13.29 55.43 0.74 -23.66 16 24 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 25 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.09 1.15 6.56 -51.93 -0.34 0.81 16 29 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.07 0.74 6.89 -51.93 -0.36 0.39 16 31 H 0.10 1.25 7.01 -51.93 -0.36 0.88 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.64 5.97 -51.93 -0.31 0.33 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.85 4.76 -51.93 -0.25 0.60 16 43 H 0.09 1.98 6.87 -51.92 -0.36 1.62 16 44 H 0.08 1.91 8.14 -51.92 -0.42 1.49 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -36.02 362.27 -9.15 -45.17 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.27 Total: -0.01 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.50 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.32 Total: -31.77 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -2.19 Total: -61.15 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 54.13 SS G_CDS: -0.39 Total: 53.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.02 -9.15 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.388 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds