Wall clock time and date at job start Tue Mar 31 2020 12:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47102 * 2 1 4 4 C 1.50701 * 109.47081 * 120.00266 * 2 1 3 5 5 O 1.21277 * 119.99810 * 99.99953 * 4 2 1 6 6 N 1.34773 * 119.99638 * 279.99707 * 4 2 1 7 7 C 1.46926 * 120.62904 * 180.02562 * 6 4 2 8 8 C 1.53192 * 108.77820 * 233.58715 * 7 6 4 9 9 H 1.08995 * 109.49883 * 185.40976 * 8 7 6 10 10 C 1.53003 * 109.49364 * 65.31637 * 8 7 6 11 11 C 1.53033 * 109.31270 * 305.36633 * 8 7 6 12 12 C 1.53041 * 109.53898 * 61.36218 * 11 8 7 13 13 H 1.08994 * 109.52286 * 58.60459 * 12 11 8 14 14 C 1.53004 * 109.49660 * 178.68381 * 12 11 8 15 15 C 1.46927 * 120.63516 * 359.97438 * 6 4 2 16 16 S 1.81406 * 109.46974 * 240.00260 * 2 1 3 17 17 O 1.42103 * 108.57704 * 174.48595 * 16 2 1 18 18 O 1.42101 * 108.57800 * 305.51259 * 16 2 1 19 19 C 1.81396 * 101.92295 * 60.00027 * 16 2 1 20 20 C 1.50695 * 109.47100 * 180.02562 * 19 16 2 21 21 H 1.07997 * 119.99945 * 359.97438 * 20 19 16 22 22 C 1.37881 * 119.99993 * 180.02562 * 20 19 16 23 23 N 1.31513 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99916 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47176 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47035 * 120.00052 * 24 22 20 27 27 H 1.48492 * 109.47009 * 239.99583 * 24 22 20 28 28 H 1.09003 * 109.47174 * 59.99787 * 1 2 3 29 29 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46918 * 299.99900 * 1 2 3 31 31 H 1.09006 * 109.58406 * 353.37631 * 7 6 4 32 32 H 1.09002 * 109.59019 * 113.79619 * 7 6 4 33 33 H 1.08996 * 109.47372 * 60.00238 * 10 8 7 34 34 H 1.08996 * 109.46993 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47158 * 300.00027 * 10 8 7 36 36 H 1.09002 * 109.45686 * 301.34174 * 11 8 7 37 37 H 1.09001 * 109.46425 * 181.38151 * 11 8 7 38 38 H 1.09004 * 109.46885 * 179.83832 * 14 12 11 39 39 H 1.08992 * 109.47045 * 299.83708 * 14 12 11 40 40 H 1.09000 * 109.47338 * 59.84089 * 14 12 11 41 41 H 1.08997 * 109.58859 * 246.20187 * 15 6 4 42 42 H 1.09000 * 109.58547 * 6.62605 * 15 6 4 43 43 H 1.09008 * 109.47199 * 299.99979 * 19 16 2 44 44 H 1.09002 * 109.47068 * 59.99653 * 19 16 2 45 45 H 0.96997 * 120.00098 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4063 -1.8617 1.1556 6 7 2.0658 -0.0664 2.4139 7 6 2.5534 -0.7455 3.6221 8 6 1.4893 -0.6272 4.7177 9 1 1.8770 -1.0426 5.6478 10 6 0.2357 -1.3972 4.2972 11 6 1.1374 0.8477 4.9244 12 6 0.5623 1.4232 3.6282 13 1 -0.3222 0.8559 3.3387 14 6 0.1805 2.8888 3.8454 15 6 1.6166 1.3284 2.5201 16 16 2.1346 -0.8551 -1.4812 17 8 3.5496 -0.7330 -1.5286 18 8 1.5478 -2.1484 -1.5286 19 6 1.4228 0.1515 -2.8118 20 6 1.8269 -0.4210 -4.1459 21 1 2.4500 -1.3021 -4.1890 22 6 1.4021 0.1806 -5.3116 23 7 0.6438 1.2538 -5.2591 24 14 1.9036 -0.5288 -6.9653 25 1 2.7511 -1.7295 -6.7524 26 1 0.6886 -0.9103 -7.7292 27 1 2.6691 0.4891 -7.7288 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.7356 -1.7974 3.4017 32 1 3.4776 -0.2751 3.9580 33 1 0.4874 -2.4470 4.1473 34 1 -0.5213 -1.3124 5.0768 35 1 -0.1521 -0.9802 3.3677 36 1 2.0358 1.4001 5.1998 37 1 0.3983 0.9367 5.7205 38 1 -0.2264 3.2991 2.9211 39 1 -0.5692 2.9560 4.6337 40 1 1.0651 3.4556 4.1360 41 1 2.4644 1.9676 2.7663 42 1 1.1806 1.6451 1.5726 43 1 0.3359 0.1471 -2.7292 44 1 1.7893 1.1748 -2.7291 45 1 0.3446 1.6768 -6.0791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905267452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:26 Heat of formation + Delta-G solvation = -148.895601 kcal Electronic energy + Delta-G solvation = -26289.157336 eV Core-core repulsion = 22625.391875 eV Total energy + Delta-G solvation = -3663.765461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73512 -39.21242 -37.87254 -36.85408 -35.56520 -35.29150 -34.46048 -33.62330 -31.01644 -28.11671 -27.56393 -27.03856 -25.59522 -25.35833 -22.58748 -21.53068 -19.73677 -19.43198 -19.00484 -18.75521 -17.66892 -17.29033 -16.94195 -16.64860 -16.30032 -15.99621 -15.90034 -15.35761 -15.04476 -14.98250 -14.58513 -14.47644 -14.13484 -13.94031 -13.77376 -13.45711 -13.37845 -13.10466 -13.03827 -12.95108 -12.90034 -12.83079 -12.70703 -12.62645 -12.54189 -12.47886 -11.99268 -11.83295 -11.78734 -11.63718 -11.41090 -11.35688 -11.00624 -10.84498 -10.75394 -9.76223 -8.41272 -6.56622 -0.88262 1.24304 1.37594 1.38885 1.52980 1.71370 2.09252 2.32407 2.84181 2.91809 3.13793 3.24972 3.65390 3.71360 3.81365 3.84419 3.89737 3.95439 4.18803 4.37661 4.48207 4.50297 4.55435 4.63305 4.68067 4.69702 4.73649 4.74620 4.78085 4.84556 4.92442 5.04894 5.06347 5.11271 5.14211 5.22536 5.30640 5.37363 5.42138 5.49256 5.55642 5.74222 6.09254 6.50375 6.79923 7.13445 8.71113 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.003632 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.295949 B = 7706.865344 C = 8285.527681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.603 4.603 3 H 0.191 0.809 4 C 0.537 3.463 5 O -0.580 6.580 6 N -0.589 5.589 7 C 0.103 3.897 8 C -0.099 4.099 9 H 0.100 0.900 10 C -0.149 4.149 11 C -0.105 4.105 12 C -0.107 4.107 13 H 0.075 0.925 14 C -0.142 4.142 15 C 0.089 3.911 16 S 2.416 3.584 17 O -0.993 6.993 18 O -0.978 6.978 19 C -0.408 4.408 20 C -0.567 4.567 21 H 0.053 0.947 22 C 0.033 3.967 23 N -0.901 5.901 24 Si 0.958 3.042 25 H -0.272 1.272 26 H -0.263 1.263 27 H -0.263 1.263 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 7.681 22.581 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.714 4.714 3 H 0.208 0.792 4 C 0.324 3.676 5 O -0.460 6.460 6 N -0.319 5.319 7 C -0.019 4.019 8 C -0.118 4.118 9 H 0.118 0.882 10 C -0.206 4.206 11 C -0.142 4.142 12 C -0.126 4.126 13 H 0.093 0.907 14 C -0.200 4.200 15 C -0.033 4.033 16 S 2.603 3.397 17 O -0.990 6.990 18 O -0.975 6.975 19 C -0.542 4.542 20 C -0.606 4.606 21 H 0.071 0.929 22 C -0.171 4.171 23 N -0.538 5.538 24 Si 0.780 3.220 25 H -0.197 1.197 26 H -0.188 1.188 27 H -0.188 1.188 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.320 6.455 22.475 23.619 hybrid contribution -0.018 0.028 -0.990 0.990 sum -3.338 6.484 21.486 22.690 Atomic orbital electron populations 1.21781 0.85537 1.04874 1.07373 1.30536 1.10738 1.16376 1.13761 0.79192 1.19590 0.77433 0.85597 0.84972 1.90815 1.50403 1.18956 1.85850 1.47972 1.62482 1.14603 1.06877 1.21941 0.97826 0.98293 0.83864 1.21494 0.94960 0.97539 0.97831 0.88160 1.21866 0.98039 0.99152 1.01562 1.21620 1.01975 0.93494 0.97138 1.21571 0.97773 0.98410 0.94868 0.90684 1.21751 1.02144 0.93542 1.02551 1.22419 0.99186 0.79869 1.01798 1.08154 0.75417 0.77680 0.78409 1.93397 1.30859 1.87918 1.86806 1.93404 1.79394 1.38353 1.86321 1.27563 1.08684 1.09300 1.08703 1.20728 1.35099 1.13996 0.90744 0.92878 1.25668 0.93863 0.94800 1.02729 1.69972 1.33880 1.19750 1.30158 0.85506 0.79023 0.78954 0.78476 1.19672 1.18811 1.18766 0.87877 0.91618 0.86825 0.91396 0.89382 0.94418 0.90895 0.93514 0.90489 0.90047 0.91969 0.91509 0.91688 0.88979 0.88134 0.88228 0.88636 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.65 71.98 0.62 -2.85 16 2 C -0.60 -18.89 2.24 29.85 0.07 -18.82 16 3 H 0.19 4.28 6.80 -2.39 -0.02 4.26 16 4 C 0.54 18.24 6.88 87.66 0.60 18.84 16 5 O -0.58 -25.69 15.06 5.50 0.08 -25.61 16 6 N -0.59 -13.95 2.41 -818.81 -1.97 -15.93 16 7 C 0.10 2.14 5.83 86.36 0.50 2.64 16 8 C -0.10 -1.42 3.21 -10.72 -0.03 -1.46 16 9 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 10 C -0.15 -2.61 8.71 71.98 0.63 -1.98 16 11 C -0.10 -1.05 4.71 30.62 0.14 -0.91 16 12 C -0.11 -1.21 2.53 -10.70 -0.03 -1.23 16 13 H 0.07 0.98 6.33 -2.39 -0.02 0.96 16 14 C -0.14 -1.12 9.20 71.98 0.66 -0.45 16 15 C 0.09 1.35 5.09 86.38 0.44 1.79 16 16 S 2.42 111.82 3.59 -56.49 -0.20 111.62 16 17 O -0.99 -52.61 18.10 -127.37 -2.31 -54.92 16 18 O -0.98 -52.46 17.40 -122.76 -2.14 -54.60 16 19 C -0.41 -19.60 5.11 71.23 0.36 -19.24 16 20 C -0.57 -32.46 9.13 25.60 0.23 -32.23 16 21 H 0.05 3.15 7.71 -2.91 -0.02 3.13 16 22 C 0.03 1.82 5.46 84.66 0.46 2.29 16 23 N -0.90 -49.44 13.29 21.45 0.28 -49.15 16 24 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 28 H 0.10 2.38 6.56 -2.39 -0.02 2.36 16 29 H 0.06 1.90 8.06 -2.39 -0.02 1.88 16 30 H 0.11 1.94 6.89 -2.39 -0.02 1.93 16 31 H 0.07 1.82 7.01 -2.38 -0.02 1.81 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.93 5.97 -2.39 -0.01 0.92 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 1.38 4.76 -2.39 -0.01 1.37 16 43 H 0.10 4.48 6.87 -2.39 -0.02 4.46 16 44 H 0.10 4.30 8.14 -2.39 -0.02 4.28 16 45 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -82.59 362.27 1.42 -81.18 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.97 Total: 15.77 kcal Atomic # 6 Polarization: -58.28 SS G_CDS: 4.67 Total: -53.61 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -1.69 Total: -65.08 kcal Atomic # 8 Polarization: -130.77 SS G_CDS: -4.36 Total: -135.13 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 111.82 SS G_CDS: -0.20 Total: 111.62 kcal Total: -82.59 1.42 -81.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.718 kcal (2) G-P(sol) polarization free energy of solvation -82.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds