Wall clock time and date at job start Tue Mar 31 2020 12:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 6 6 C 1.53002 * 109.46969 * 299.99553 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00060 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99774 * 7 6 5 9 9 N 1.46500 * 109.47204 * 179.97438 * 7 6 5 10 10 C 1.34773 * 119.99955 * 274.99858 * 9 7 6 11 11 O 1.21282 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99832 * 180.02562 * 10 9 7 13 13 S 1.81401 * 109.47191 * 180.02562 * 12 10 9 14 14 O 1.42103 * 108.58072 * 294.49099 * 13 12 10 15 15 O 1.42098 * 108.57825 * 65.51176 * 13 12 10 16 16 C 1.81394 * 101.92210 * 179.97438 * 13 12 10 17 17 C 1.50707 * 109.47193 * 180.02562 * 16 13 12 18 18 H 1.07999 * 120.00014 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00000 * 180.02562 * 17 16 13 20 20 N 1.31504 * 120.00152 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99686 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47121 * 89.99854 * 21 19 17 23 23 H 1.48501 * 109.47102 * 209.99530 * 21 19 17 24 24 H 1.48497 * 109.47342 * 329.99786 * 21 19 17 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 H 1.09000 * 109.47486 * 180.02562 * 25 2 1 27 27 C 1.53005 * 109.47159 * 300.00546 * 25 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.47552 * 59.99646 * 5 4 2 34 34 H 1.09004 * 109.47298 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.47067 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47312 * 299.99939 * 6 5 4 37 37 H 0.97001 * 119.99882 * 94.99976 * 9 7 6 38 38 H 1.08999 * 109.47354 * 299.99726 * 12 10 9 39 39 H 1.08994 * 109.47297 * 60.00293 * 12 10 9 40 40 H 1.08997 * 109.47284 * 299.99908 * 16 13 12 41 41 H 1.09002 * 109.47496 * 60.00215 * 16 13 12 42 42 H 0.97001 * 120.00294 * 180.02562 * 20 19 17 43 43 H 1.08992 * 109.47061 * 59.99386 * 27 25 2 44 44 H 1.09001 * 109.46812 * 179.97438 * 27 25 2 45 45 H 1.09002 * 109.46935 * 299.99411 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 7 2.0179 -2.8547 2.4455 10 6 1.3406 -3.9113 2.9367 11 8 0.3275 -4.2904 2.3882 12 6 1.8421 -4.6216 4.1675 13 16 0.7227 -5.9899 4.5743 14 8 -0.5391 -5.4490 4.9409 15 8 0.7880 -6.9534 3.5319 16 6 1.5056 -6.6871 6.0546 17 6 0.6972 -7.8606 6.5450 18 1 -0.1982 -8.1571 6.0190 19 6 1.1002 -8.5552 7.6659 20 7 2.1902 -8.1939 8.3067 21 14 0.0978 -10.0093 8.2741 22 1 0.5900 -11.2537 7.6304 23 1 0.2381 -10.1255 9.7479 24 1 -1.3317 -9.8048 7.9275 25 6 2.0400 -0.7212 1.2493 26 1 3.1300 -0.7208 1.2495 27 6 1.5299 0.0001 2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6768 -0.2074 -2.1391 32 1 3.1300 -0.7209 -1.2494 33 1 0.4400 -2.1638 -1.2492 34 1 1.8931 -2.6775 -2.1394 35 1 1.6764 -3.9125 0.0003 36 1 3.1301 -2.8850 0.0001 37 1 2.8283 -2.5517 2.8840 38 1 2.8413 -5.0141 3.9788 39 1 1.8784 -3.9212 5.0018 40 1 2.5148 -7.0184 5.8101 41 1 1.5518 -5.9263 6.8338 42 1 2.4740 -8.6827 9.0950 43 1 0.4400 0.0001 2.4984 44 1 1.8929 -0.5140 3.3885 45 1 1.8933 1.0278 2.4985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905269414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:59 Heat of formation + Delta-G solvation = -137.594253 kcal Electronic energy + Delta-G solvation = -25374.629669 eV Core-core repulsion = 21711.354271 eV Total energy + Delta-G solvation = -3663.275398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.58692 -38.83635 -35.92711 -34.98154 -34.62108 -33.34335 -33.07460 -31.31189 -29.52416 -28.96876 -27.53137 -25.91606 -23.58965 -22.63304 -21.60239 -20.73461 -18.99114 -17.95043 -17.27546 -16.95460 -16.61865 -15.82270 -15.47740 -15.31446 -15.22095 -14.71038 -14.61078 -14.31854 -14.15384 -13.89712 -13.70565 -13.35960 -12.82961 -12.59342 -12.49268 -12.41985 -12.25886 -12.13363 -11.80688 -11.65332 -11.47491 -11.37914 -11.03815 -11.01371 -10.98505 -10.88135 -10.77386 -10.60936 -10.59121 -10.36187 -10.25639 -9.99956 -9.76724 -9.15098 -9.08707 -8.70628 -6.33429 -4.42328 0.88251 2.55485 3.00411 3.23708 3.28794 3.36183 3.82537 4.22671 4.25714 4.36731 4.41519 4.53119 4.68664 4.75925 4.87328 4.96613 5.03405 5.04009 5.06206 5.11614 5.14325 5.29516 5.34499 5.40298 5.46585 5.51224 5.52320 5.61601 5.69687 5.74134 5.77796 5.87492 5.90779 5.97050 6.05868 6.08550 6.26486 6.38756 6.62316 6.66388 7.30222 7.49539 7.74675 8.08826 8.59893 9.24817 10.78626 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.002762 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.870180 B =10133.563374 C =10324.540520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.081 4.081 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.133 4.133 7 C 0.145 3.855 8 H 0.095 0.905 9 N -0.721 5.721 10 C 0.545 3.455 11 O -0.525 6.525 12 C -0.677 4.677 13 S 2.423 3.577 14 O -0.942 6.942 15 O -0.943 6.943 16 C -0.407 4.407 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.075 3.925 20 N -0.883 5.883 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.266 1.266 25 C -0.093 4.093 26 H 0.075 0.925 27 C -0.152 4.152 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.401 0.599 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.268 0.732 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 18.452 -14.185 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.172 4.172 7 C 0.040 3.960 8 H 0.113 0.887 9 N -0.372 5.372 10 C 0.330 3.670 11 O -0.401 6.401 12 C -0.800 4.800 13 S 2.604 3.396 14 O -0.940 6.940 15 O -0.940 6.940 16 C -0.542 4.542 17 C -0.567 4.567 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.520 5.520 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.112 4.112 26 H 0.093 0.907 27 C -0.209 4.209 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.236 0.764 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.747 17.971 -14.936 23.666 hybrid contribution 1.051 -0.182 1.077 1.516 sum 4.798 17.789 -13.858 23.055 Atomic orbital electron populations 1.22053 0.95060 1.02647 1.01795 1.21074 0.96257 0.98960 0.93739 0.90857 1.21606 1.00539 0.95777 0.97438 1.21539 1.01467 0.95245 0.97449 1.21960 1.00899 1.00340 0.93972 1.21146 1.00594 0.90365 0.83866 0.88696 1.45947 1.29254 1.32079 1.29966 1.19416 0.83486 0.80226 0.83865 1.90842 1.24234 1.64714 1.60357 1.31164 1.21357 1.22492 1.04973 1.08483 0.77016 0.75236 0.78914 1.93466 1.37082 1.79215 1.84195 1.93464 1.86720 1.56968 1.56822 1.27621 1.08223 1.07307 1.11057 1.20373 1.10473 1.12607 1.13254 0.90841 1.24928 0.95061 0.97582 0.95539 1.69938 1.22754 1.40278 1.18994 0.86339 0.80819 0.81719 0.77923 1.19880 1.20657 1.18977 1.21404 1.00510 0.93606 0.95666 0.90684 1.21918 1.02029 0.99979 0.97019 0.91745 0.92680 0.92257 0.91822 0.91959 0.91289 0.91722 0.90940 0.91782 0.76444 0.82863 0.82870 0.89654 0.89652 0.92219 0.91966 0.92419 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.15 37.16 0.30 -0.90 16 2 C -0.08 -0.56 2.72 -90.63 -0.25 -0.81 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.79 5.45 -26.74 -0.15 -0.94 16 5 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 6 C -0.13 -1.37 5.49 -26.73 -0.15 -1.52 16 7 C 0.14 1.53 1.62 -67.93 -0.11 1.42 16 8 H 0.10 1.21 5.86 -51.93 -0.30 0.91 16 9 N -0.72 -8.23 4.38 -53.81 -0.24 -8.47 16 10 C 0.54 8.77 7.81 -10.99 -0.09 8.69 16 11 O -0.53 -10.82 15.29 2.55 0.04 -10.78 16 12 C -0.68 -10.01 6.29 36.01 0.23 -9.78 16 13 S 2.42 52.50 3.88 -107.50 -0.42 52.08 16 14 O -0.94 -23.48 17.95 -59.53 -1.07 -24.55 16 15 O -0.94 -23.47 17.95 -59.52 -1.07 -24.54 16 16 C -0.41 -9.57 5.56 36.01 0.20 -9.37 16 17 C -0.53 -14.69 9.13 -34.44 -0.31 -15.00 16 18 H 0.07 2.05 7.71 -52.49 -0.40 1.65 16 19 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 20 N -0.88 -24.68 13.29 55.43 0.74 -23.94 16 21 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.09 -0.71 2.07 -90.61 -0.19 -0.90 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 C -0.15 -1.17 8.68 37.16 0.32 -0.85 16 28 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.40 3.28 8.39 -40.82 -0.34 2.93 16 38 H 0.15 1.74 8.14 -51.92 -0.42 1.31 16 39 H 0.15 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 41 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 44 H 0.06 0.45 7.45 -51.93 -0.39 0.07 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -36.53 365.34 -9.28 -45.82 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.32 Total: 1.92 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: -0.43 Total: -29.16 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.50 Total: -32.41 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -2.10 Total: -59.87 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 52.50 SS G_CDS: -0.42 Total: 52.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.53 -9.28 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.778 kcal (2) G-P(sol) polarization free energy of solvation -36.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds