Wall clock time and date at job start Tue Mar 31 2020 12:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 6 6 C 1.53002 * 109.46969 * 299.99553 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00060 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99774 * 7 6 5 9 9 N 1.46500 * 109.47204 * 179.97438 * 7 6 5 10 10 C 1.34773 * 119.99955 * 274.99858 * 9 7 6 11 11 O 1.21282 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99832 * 180.02562 * 10 9 7 13 13 S 1.81401 * 109.47191 * 180.02562 * 12 10 9 14 14 O 1.42103 * 108.58072 * 294.49099 * 13 12 10 15 15 O 1.42098 * 108.57825 * 65.51176 * 13 12 10 16 16 C 1.81394 * 101.92210 * 179.97438 * 13 12 10 17 17 C 1.50707 * 109.47193 * 180.02562 * 16 13 12 18 18 H 1.07999 * 120.00014 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00000 * 180.02562 * 17 16 13 20 20 N 1.31504 * 120.00152 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99686 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47121 * 89.99854 * 21 19 17 23 23 H 1.48501 * 109.47102 * 209.99530 * 21 19 17 24 24 H 1.48497 * 109.47342 * 329.99786 * 21 19 17 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 H 1.09000 * 109.47486 * 180.02562 * 25 2 1 27 27 C 1.53005 * 109.47159 * 300.00546 * 25 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.47552 * 59.99646 * 5 4 2 34 34 H 1.09004 * 109.47298 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.47067 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47312 * 299.99939 * 6 5 4 37 37 H 0.97001 * 119.99882 * 94.99976 * 9 7 6 38 38 H 1.08999 * 109.47354 * 299.99726 * 12 10 9 39 39 H 1.08994 * 109.47297 * 60.00293 * 12 10 9 40 40 H 1.08997 * 109.47284 * 299.99908 * 16 13 12 41 41 H 1.09002 * 109.47496 * 60.00215 * 16 13 12 42 42 H 0.97001 * 120.00294 * 180.02562 * 20 19 17 43 43 H 1.08992 * 109.47061 * 59.99386 * 27 25 2 44 44 H 1.09001 * 109.46812 * 179.97438 * 27 25 2 45 45 H 1.09002 * 109.46935 * 299.99411 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 7 2.0179 -2.8547 2.4455 10 6 1.3406 -3.9113 2.9367 11 8 0.3275 -4.2904 2.3882 12 6 1.8421 -4.6216 4.1675 13 16 0.7227 -5.9899 4.5743 14 8 -0.5391 -5.4490 4.9409 15 8 0.7880 -6.9534 3.5319 16 6 1.5056 -6.6871 6.0546 17 6 0.6972 -7.8606 6.5450 18 1 -0.1982 -8.1571 6.0190 19 6 1.1002 -8.5552 7.6659 20 7 2.1902 -8.1939 8.3067 21 14 0.0978 -10.0093 8.2741 22 1 0.5900 -11.2537 7.6304 23 1 0.2381 -10.1255 9.7479 24 1 -1.3317 -9.8048 7.9275 25 6 2.0400 -0.7212 1.2493 26 1 3.1300 -0.7208 1.2495 27 6 1.5299 0.0001 2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6768 -0.2074 -2.1391 32 1 3.1300 -0.7209 -1.2494 33 1 0.4400 -2.1638 -1.2492 34 1 1.8931 -2.6775 -2.1394 35 1 1.6764 -3.9125 0.0003 36 1 3.1301 -2.8850 0.0001 37 1 2.8283 -2.5517 2.8840 38 1 2.8413 -5.0141 3.9788 39 1 1.8784 -3.9212 5.0018 40 1 2.5148 -7.0184 5.8101 41 1 1.5518 -5.9263 6.8338 42 1 2.4740 -8.6827 9.0950 43 1 0.4400 0.0001 2.4984 44 1 1.8929 -0.5140 3.3885 45 1 1.8933 1.0278 2.4985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905269414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:58 Heat of formation + Delta-G solvation = -164.998700 kcal Electronic energy + Delta-G solvation = -25375.818015 eV Core-core repulsion = 21711.354271 eV Total energy + Delta-G solvation = -3664.463744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54152 -39.84968 -37.78114 -36.80064 -35.68133 -35.38117 -33.73821 -32.39388 -31.05265 -30.38928 -28.21953 -26.58356 -25.56603 -23.51612 -22.27237 -21.86606 -19.91615 -19.53889 -18.92604 -18.30773 -17.86684 -17.24480 -17.12392 -16.72366 -16.24180 -16.09371 -15.91076 -15.49400 -15.02213 -14.87301 -14.57021 -14.46041 -14.29403 -14.01600 -13.64503 -13.44992 -13.38708 -13.25733 -12.92846 -12.86342 -12.85495 -12.71829 -12.54033 -12.50583 -12.30215 -12.19420 -11.97651 -11.76885 -11.68399 -11.58844 -11.23601 -11.13493 -10.96765 -10.83368 -10.76343 -10.16087 -8.41206 -6.56266 -0.82063 1.31218 1.38334 1.38868 1.51312 1.88054 2.19545 2.33185 2.92911 3.03200 3.27744 3.50264 3.60186 3.73639 3.87951 4.00872 4.11788 4.18116 4.26217 4.37586 4.39202 4.43444 4.49377 4.66835 4.71582 4.76585 4.79070 4.84707 4.92156 5.01894 5.05473 5.09439 5.16012 5.18866 5.25063 5.33150 5.38099 5.38780 5.45948 5.48489 5.63405 5.75372 6.28081 6.52011 7.00198 7.13846 8.71174 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.002762 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.870180 B =10133.563374 C =10324.540520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.079 4.079 3 H 0.094 0.906 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.131 4.131 7 C 0.140 3.860 8 H 0.067 0.933 9 N -0.695 5.695 10 C 0.534 3.466 11 O -0.581 6.581 12 C -0.645 4.645 13 S 2.429 3.571 14 O -0.988 6.988 15 O -0.988 6.988 16 C -0.417 4.417 17 C -0.566 4.566 18 H 0.056 0.944 19 C 0.029 3.971 20 N -0.905 5.905 21 Si 0.958 3.042 22 H -0.264 1.264 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.084 4.084 26 H 0.097 0.903 27 C -0.154 4.154 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.422 0.578 38 H 0.200 0.800 39 H 0.200 0.800 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.275 0.725 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 20.682 -14.360 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.098 4.098 3 H 0.112 0.888 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.170 4.170 7 C 0.036 3.964 8 H 0.085 0.915 9 N -0.347 5.347 10 C 0.319 3.681 11 O -0.462 6.462 12 C -0.775 4.775 13 S 2.616 3.384 14 O -0.985 6.985 15 O -0.985 6.985 16 C -0.551 4.551 17 C -0.604 4.604 18 H 0.074 0.926 19 C -0.174 4.174 20 N -0.542 5.542 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.189 1.189 24 H -0.194 1.194 25 C -0.103 4.103 26 H 0.116 0.884 27 C -0.211 4.211 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.260 0.740 38 H 0.217 0.783 39 H 0.217 0.783 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.204 20.171 -15.075 25.935 hybrid contribution 0.346 -0.750 1.059 1.343 sum 6.550 19.421 -14.016 24.830 Atomic orbital electron populations 1.22054 0.96080 1.01370 1.02165 1.21105 0.95375 0.99915 0.93364 0.88820 1.21585 1.01278 0.94123 0.97812 1.21537 1.00720 0.96695 0.96711 1.21930 1.01809 0.98483 0.94748 1.21285 0.99319 0.92383 0.83461 0.91505 1.45789 1.29080 1.30134 1.29681 1.19643 0.83223 0.81163 0.84035 1.90842 1.26813 1.66495 1.62002 1.30719 1.20631 1.19753 1.06423 1.07601 0.77163 0.76200 0.77436 1.93408 1.40467 1.80081 1.84551 1.93407 1.87627 1.60213 1.57269 1.27619 1.08131 1.06628 1.12691 1.20742 1.10869 1.14760 1.14069 0.92625 1.25705 0.96122 0.99966 0.95606 1.69972 1.23533 1.41273 1.19395 0.85547 0.79150 0.78944 0.78293 1.18939 1.18908 1.19388 1.21397 1.01638 0.91073 0.96181 0.88435 1.21942 1.01137 1.01122 0.96906 0.93877 0.91813 0.92420 0.90771 0.90572 0.92664 0.91146 0.94528 0.89979 0.73985 0.78283 0.78259 0.88689 0.88675 0.91605 0.93513 0.92410 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.15 71.98 0.59 -1.69 16 2 C -0.08 -0.87 2.72 -10.80 -0.03 -0.90 16 3 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.11 -1.19 5.45 30.59 0.17 -1.02 16 5 C -0.12 -1.89 5.65 30.59 0.17 -1.71 16 6 C -0.13 -2.59 5.49 30.59 0.17 -2.42 16 7 C 0.14 2.79 1.62 44.99 0.07 2.86 16 8 H 0.07 1.77 5.86 -2.39 -0.01 1.75 16 9 N -0.70 -14.27 4.38 -442.53 -1.94 -16.21 16 10 C 0.53 16.56 7.81 87.66 0.68 17.25 16 11 O -0.58 -24.66 15.29 -0.16 0.00 -24.66 16 12 C -0.65 -17.37 6.29 71.24 0.45 -16.92 16 13 S 2.43 106.75 3.88 -56.49 -0.22 106.53 16 14 O -0.99 -50.99 17.95 -125.74 -2.26 -53.25 16 15 O -0.99 -51.00 17.95 -125.76 -2.26 -53.25 16 16 C -0.42 -19.69 5.56 71.24 0.40 -19.30 16 17 C -0.57 -32.24 9.13 25.60 0.23 -32.00 16 18 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 19 C 0.03 1.62 5.46 84.66 0.46 2.08 16 20 N -0.90 -50.28 13.29 21.45 0.28 -49.99 16 21 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 25 C -0.08 -1.04 2.07 -10.79 -0.02 -1.06 16 26 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 27 C -0.15 -1.95 8.68 71.98 0.63 -1.32 16 28 H 0.04 0.80 4.81 -2.39 -0.01 0.79 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.82 6.43 -2.38 -0.02 0.81 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 1.02 6.43 -2.39 -0.02 1.01 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.42 5.12 8.39 -92.71 -0.78 4.34 16 38 H 0.20 3.61 8.14 -2.39 -0.02 3.59 16 39 H 0.20 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.10 4.23 8.14 -2.39 -0.02 4.21 16 41 H 0.10 4.23 8.14 -2.39 -0.02 4.21 16 42 H 0.27 14.16 8.31 -92.71 -0.77 13.38 16 43 H 0.05 0.74 6.43 -2.39 -0.02 0.73 16 44 H 0.06 0.72 7.45 -2.39 -0.02 0.71 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -84.34 365.34 -0.19 -84.54 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.21 Total: 17.04 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 3.97 Total: -56.16 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -1.66 Total: -66.21 kcal Atomic # 8 Polarization: -126.65 SS G_CDS: -4.52 Total: -131.16 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 106.75 SS G_CDS: -0.22 Total: 106.53 kcal Total: -84.34 -0.19 -84.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.463 kcal (2) G-P(sol) polarization free energy of solvation -84.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds