Wall clock time and date at job start Tue Mar 31 2020 12:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46833 * 2 1 4 4 C 1.52998 * 109.47336 * 240.00547 * 2 1 3 5 5 C 1.52996 * 109.47336 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47386 * 59.99530 * 5 4 2 7 7 C 1.52999 * 109.47449 * 300.00168 * 6 5 4 8 8 H 1.09003 * 109.46903 * 300.00159 * 7 6 5 9 9 N 1.46493 * 109.47638 * 179.97438 * 7 6 5 10 10 C 1.34784 * 119.99864 * 84.99998 * 9 7 6 11 11 O 1.21283 * 119.99649 * 359.72839 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72721 * 10 9 7 13 13 S 1.81401 * 109.47154 * 180.02562 * 12 10 9 14 14 O 1.42107 * 108.57454 * 294.48640 * 13 12 10 15 15 O 1.42099 * 108.58013 * 65.51087 * 13 12 10 16 16 C 1.81400 * 101.92158 * 179.97438 * 13 12 10 17 17 C 1.50703 * 109.46999 * 179.97438 * 16 13 12 18 18 H 1.08007 * 119.99774 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00120 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00229 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 119.99877 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47383 * 89.99885 * 21 19 17 23 23 H 1.48500 * 109.47119 * 209.99957 * 21 19 17 24 24 H 1.48500 * 109.47427 * 330.00234 * 21 19 17 25 25 C 1.52994 * 109.47386 * 120.00077 * 2 1 3 26 26 H 1.09003 * 109.47197 * 60.00146 * 25 2 1 27 27 C 1.52999 * 109.47449 * 300.00168 * 25 2 1 28 28 H 1.08994 * 109.47374 * 299.99330 * 1 2 3 29 29 H 1.08994 * 109.47433 * 59.99891 * 1 2 3 30 30 H 1.09003 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46713 * 299.99526 * 4 2 1 32 32 H 1.08994 * 109.47217 * 59.99430 * 4 2 1 33 33 H 1.09003 * 109.47419 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.46833 * 299.99453 * 5 4 2 35 35 H 1.09003 * 109.47448 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47197 * 60.00146 * 6 5 4 37 37 H 0.97000 * 120.00740 * 264.72691 * 9 7 6 38 38 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 39 39 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 40 40 H 1.08993 * 109.46909 * 299.99652 * 16 13 12 41 41 H 1.08999 * 109.46874 * 60.00565 * 16 13 12 42 42 H 0.96997 * 120.00431 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46903 * 300.00159 * 27 25 2 44 44 H 1.09003 * 109.46886 * 59.99545 * 27 25 2 45 45 H 1.08994 * 109.47399 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 1 3.9332 0.3054 1.2498 9 7 4.0569 -1.4134 2.4456 10 6 5.2789 -1.1285 2.9377 11 8 5.9770 -0.3034 2.3873 12 6 5.7778 -1.8351 4.1717 13 16 7.4413 -1.2377 4.5797 14 8 8.3292 -1.6255 3.5401 15 8 7.3537 0.1336 4.9418 16 6 7.8324 -2.2031 6.0648 17 6 9.2079 -1.8330 6.5568 18 1 9.7886 -1.0909 6.0290 19 6 9.7247 -2.4410 7.6812 20 7 10.9253 -2.1184 8.1102 21 14 8.7201 -3.7240 8.5944 22 1 9.0109 -5.0694 8.0367 23 1 9.0766 -3.6979 10.0357 24 1 7.2741 -3.4249 8.4366 25 6 2.0400 -0.7212 1.2492 26 1 1.6767 -1.7489 1.2492 27 6 1.5301 -0.0001 2.4985 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.9334 -1.2358 -2.1388 34 1 3.9336 0.3059 -1.2487 35 1 5.1695 -1.4433 0.0007 36 1 3.7158 -2.4708 0.0000 37 1 3.4986 -2.0733 2.8859 38 1 5.1046 -1.6312 5.0043 39 1 5.8122 -2.9088 3.9867 40 1 7.0984 -1.9883 6.8415 41 1 7.8067 -3.2660 5.8244 42 1 11.2887 -2.5458 8.9014 43 1 1.8933 1.0276 2.4985 44 1 0.4400 -0.0001 2.4985 45 1 1.8938 -0.5136 3.3884 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905269416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:07 Heat of formation + Delta-G solvation = -136.544925 kcal Electronic energy + Delta-G solvation = -25224.408780 eV Core-core repulsion = 21561.178884 eV Total energy + Delta-G solvation = -3663.229896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.49609 -38.78704 -36.04926 -35.09240 -34.73450 -33.39888 -33.23748 -31.55882 -29.95364 -29.51054 -27.29250 -25.85052 -23.17711 -22.25212 -21.43313 -20.71562 -20.00549 -18.05621 -17.54010 -17.24181 -16.50313 -15.91185 -15.40750 -15.25607 -15.07853 -14.89660 -14.76897 -14.55726 -14.24781 -14.12594 -13.65525 -13.18289 -12.94803 -12.70500 -12.61852 -12.50875 -12.39595 -12.17743 -12.09679 -11.81060 -11.59661 -11.38671 -11.17583 -11.14037 -11.09116 -10.87251 -10.83134 -10.72841 -10.51950 -10.41384 -10.33967 -10.05614 -9.81698 -9.32864 -9.21898 -8.82829 -6.29456 -4.37899 0.71259 2.47359 2.91416 3.13076 3.17960 3.22088 3.69354 4.21020 4.21912 4.27240 4.33938 4.45363 4.55204 4.65758 4.80497 4.84097 4.95889 5.03442 5.05078 5.10487 5.11174 5.20148 5.25509 5.29622 5.35850 5.40126 5.46982 5.55399 5.59429 5.70396 5.71545 5.83866 5.86173 5.92392 6.01130 6.03023 6.14297 6.14924 6.27204 6.32343 7.19639 7.22703 8.01078 8.04701 8.65888 9.24270 10.81806 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.002849 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.099901 B = 9824.408616 C =10205.416978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.133 4.133 7 C 0.147 3.853 8 H 0.092 0.908 9 N -0.720 5.720 10 C 0.545 3.455 11 O -0.523 6.523 12 C -0.680 4.680 13 S 2.446 3.554 14 O -0.933 6.933 15 O -0.933 6.933 16 C -0.461 4.461 17 C -0.529 4.529 18 H 0.090 0.910 19 C 0.087 3.913 20 N -0.880 5.880 21 Si 0.882 3.118 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.264 1.264 25 C -0.092 4.092 26 H 0.075 0.925 27 C -0.152 4.152 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.401 0.599 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.271 0.729 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.352 -1.734 -14.127 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.172 4.172 7 C 0.043 3.957 8 H 0.110 0.890 9 N -0.372 5.372 10 C 0.330 3.670 11 O -0.399 6.399 12 C -0.803 4.803 13 S 2.624 3.376 14 O -0.930 6.930 15 O -0.930 6.930 16 C -0.595 4.595 17 C -0.567 4.567 18 H 0.108 0.892 19 C -0.119 4.119 20 N -0.515 5.515 21 Si 0.708 3.292 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.188 1.188 25 C -0.111 4.111 26 H 0.093 0.907 27 C -0.209 4.209 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.236 0.764 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.267 -0.529 -14.874 27.620 hybrid contribution -1.304 -1.819 1.282 2.579 sum -24.571 -2.348 -13.592 28.178 Atomic orbital electron populations 1.21876 0.94938 1.01839 1.01880 1.21122 0.95631 0.99827 0.93759 0.90776 1.21637 0.95611 1.00666 0.97397 1.21493 0.95327 1.01226 0.97506 1.21960 1.01874 0.99403 0.93926 1.21081 0.93099 0.97714 0.83854 0.89022 1.45927 1.17370 1.43995 1.29899 1.19355 0.81891 0.81918 0.83857 1.90860 1.55425 1.33310 1.60263 1.31196 1.30718 1.13219 1.05197 1.07784 0.74620 0.77086 0.78070 1.93490 1.59022 1.84340 1.56159 1.93489 1.84876 1.30489 1.84152 1.28116 1.07804 1.09266 1.14277 1.20108 0.96373 1.26583 1.13669 0.89246 1.24896 0.94729 0.96174 0.96149 1.69861 1.15752 1.41911 1.24018 0.86740 0.80938 0.82010 0.79488 1.19604 1.20600 1.18809 1.21416 0.93604 1.00442 0.95644 0.90657 1.21920 1.01076 1.00967 0.96972 0.92243 0.92633 0.92729 0.91932 0.91799 0.91585 0.91568 0.90880 0.91768 0.76441 0.82807 0.82782 0.89723 0.90155 0.91851 0.92317 0.92071 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.84 37.16 0.33 -0.48 16 2 C -0.08 -0.56 2.25 -90.63 -0.20 -0.76 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -0.75 5.20 -26.73 -0.14 -0.89 16 5 C -0.12 -0.94 5.92 -26.74 -0.16 -1.10 16 6 C -0.13 -1.30 5.49 -26.73 -0.15 -1.45 16 7 C 0.15 1.47 1.90 -67.96 -0.13 1.35 16 8 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 9 N -0.72 -7.67 4.39 -53.83 -0.24 -7.90 16 10 C 0.54 8.31 7.81 -10.98 -0.09 8.22 16 11 O -0.52 -10.43 15.29 2.56 0.04 -10.39 16 12 C -0.68 -9.22 6.29 36.00 0.23 -9.00 16 13 S 2.45 50.98 3.88 -107.50 -0.42 50.57 16 14 O -0.93 -22.72 17.95 -59.53 -1.07 -23.79 16 15 O -0.93 -22.74 17.95 -59.52 -1.07 -23.81 16 16 C -0.46 -10.01 4.63 36.01 0.17 -9.84 16 17 C -0.53 -14.87 9.68 -34.44 -0.33 -15.20 16 18 H 0.09 2.77 7.96 -52.48 -0.42 2.35 16 19 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 20 N -0.88 -26.25 13.96 55.43 0.77 -25.48 16 21 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16 25 C -0.09 -0.66 1.82 -90.65 -0.16 -0.83 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 C -0.15 -1.09 8.68 37.16 0.32 -0.77 16 28 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.40 2.93 8.37 -40.82 -0.34 2.59 16 38 H 0.15 1.51 8.14 -51.92 -0.42 1.08 16 39 H 0.15 1.50 8.14 -51.92 -0.42 1.08 16 40 H 0.08 1.63 7.20 -51.93 -0.37 1.25 16 41 H 0.08 1.52 7.57 -51.92 -0.39 1.13 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 45 H 0.06 0.41 7.43 -51.93 -0.39 0.03 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -37.63 368.75 -9.14 -46.77 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.64 Total: 1.56 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -0.41 Total: -28.40 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.54 Total: -33.38 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -2.10 Total: -57.99 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 16 Polarization: 50.98 SS G_CDS: -0.42 Total: 50.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.63 -9.14 -46.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.774 kcal (2) G-P(sol) polarization free energy of solvation -37.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds