Wall clock time and date at job start Tue Mar 31 2020 12:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46833 * 2 1 4 4 C 1.52998 * 109.47336 * 240.00547 * 2 1 3 5 5 C 1.52996 * 109.47336 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47386 * 59.99530 * 5 4 2 7 7 C 1.52999 * 109.47449 * 300.00168 * 6 5 4 8 8 H 1.09003 * 109.46903 * 300.00159 * 7 6 5 9 9 N 1.46493 * 109.47638 * 179.97438 * 7 6 5 10 10 C 1.34784 * 119.99864 * 84.99998 * 9 7 6 11 11 O 1.21283 * 119.99649 * 359.72839 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72721 * 10 9 7 13 13 S 1.81401 * 109.47154 * 180.02562 * 12 10 9 14 14 O 1.42107 * 108.57454 * 294.48640 * 13 12 10 15 15 O 1.42099 * 108.58013 * 65.51087 * 13 12 10 16 16 C 1.81400 * 101.92158 * 179.97438 * 13 12 10 17 17 C 1.50703 * 109.46999 * 179.97438 * 16 13 12 18 18 H 1.08007 * 119.99774 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00120 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00229 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 119.99877 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47383 * 89.99885 * 21 19 17 23 23 H 1.48500 * 109.47119 * 209.99957 * 21 19 17 24 24 H 1.48500 * 109.47427 * 330.00234 * 21 19 17 25 25 C 1.52994 * 109.47386 * 120.00077 * 2 1 3 26 26 H 1.09003 * 109.47197 * 60.00146 * 25 2 1 27 27 C 1.52999 * 109.47449 * 300.00168 * 25 2 1 28 28 H 1.08994 * 109.47374 * 299.99330 * 1 2 3 29 29 H 1.08994 * 109.47433 * 59.99891 * 1 2 3 30 30 H 1.09003 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46713 * 299.99526 * 4 2 1 32 32 H 1.08994 * 109.47217 * 59.99430 * 4 2 1 33 33 H 1.09003 * 109.47419 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.46833 * 299.99453 * 5 4 2 35 35 H 1.09003 * 109.47448 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47197 * 60.00146 * 6 5 4 37 37 H 0.97000 * 120.00740 * 264.72691 * 9 7 6 38 38 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 39 39 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 40 40 H 1.08993 * 109.46909 * 299.99652 * 16 13 12 41 41 H 1.08999 * 109.46874 * 60.00565 * 16 13 12 42 42 H 0.96997 * 120.00431 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46903 * 300.00159 * 27 25 2 44 44 H 1.09003 * 109.46886 * 59.99545 * 27 25 2 45 45 H 1.08994 * 109.47399 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 1 3.9332 0.3054 1.2498 9 7 4.0569 -1.4134 2.4456 10 6 5.2789 -1.1285 2.9377 11 8 5.9770 -0.3034 2.3873 12 6 5.7778 -1.8351 4.1717 13 16 7.4413 -1.2377 4.5797 14 8 8.3292 -1.6255 3.5401 15 8 7.3537 0.1336 4.9418 16 6 7.8324 -2.2031 6.0648 17 6 9.2079 -1.8330 6.5568 18 1 9.7886 -1.0909 6.0290 19 6 9.7247 -2.4410 7.6812 20 7 10.9253 -2.1184 8.1102 21 14 8.7201 -3.7240 8.5944 22 1 9.0109 -5.0694 8.0367 23 1 9.0766 -3.6979 10.0357 24 1 7.2741 -3.4249 8.4366 25 6 2.0400 -0.7212 1.2492 26 1 1.6767 -1.7489 1.2492 27 6 1.5301 -0.0001 2.4985 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.9334 -1.2358 -2.1388 34 1 3.9336 0.3059 -1.2487 35 1 5.1695 -1.4433 0.0007 36 1 3.7158 -2.4708 0.0000 37 1 3.4986 -2.0733 2.8859 38 1 5.1046 -1.6312 5.0043 39 1 5.8122 -2.9088 3.9867 40 1 7.0984 -1.9883 6.8415 41 1 7.8067 -3.2660 5.8244 42 1 11.2887 -2.5458 8.9014 43 1 1.8933 1.0276 2.4985 44 1 0.4400 -0.0001 2.4985 45 1 1.8938 -0.5136 3.3884 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905269416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:06 Heat of formation + Delta-G solvation = -166.798924 kcal Electronic energy + Delta-G solvation = -25225.720692 eV Core-core repulsion = 21561.178884 eV Total energy + Delta-G solvation = -3664.541807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43990 -39.69508 -37.81312 -36.81309 -35.71018 -35.27445 -34.02167 -32.53512 -31.74415 -30.55798 -27.92976 -26.44718 -25.11604 -23.12590 -22.13460 -21.62036 -20.70779 -19.68363 -19.36181 -18.51808 -17.73984 -17.24711 -17.06252 -16.57888 -16.21430 -15.95327 -15.60317 -15.55326 -15.32528 -15.01034 -14.77899 -14.63331 -14.21333 -13.79964 -13.70814 -13.48934 -13.45438 -13.01263 -12.93812 -12.87834 -12.75848 -12.61661 -12.55773 -12.45754 -12.27380 -12.03202 -11.87577 -11.79282 -11.78502 -11.61166 -11.35979 -11.15419 -11.08879 -10.94298 -10.88116 -10.16190 -8.39442 -6.57049 -0.88753 1.32606 1.37952 1.43732 1.54417 1.86659 2.19695 2.33622 2.91495 3.02762 3.26961 3.51030 3.59280 3.72419 3.86020 4.01528 4.06466 4.15522 4.26623 4.39625 4.41718 4.42984 4.48918 4.49457 4.63222 4.68572 4.72069 4.84414 4.95791 4.98883 5.08000 5.09164 5.14796 5.19127 5.24888 5.28241 5.31618 5.36261 5.45669 5.53198 5.61190 5.87442 6.29183 6.49128 7.02134 7.09898 8.76912 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.002849 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.099901 B = 9824.408616 C =10205.416978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.059 0.941 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.143 3.857 8 H 0.059 0.941 9 N -0.694 5.694 10 C 0.532 3.468 11 O -0.583 6.583 12 C -0.641 4.641 13 S 2.433 3.567 14 O -0.989 6.989 15 O -0.989 6.989 16 C -0.467 4.467 17 C -0.558 4.558 18 H 0.027 0.973 19 C 0.014 3.986 20 N -0.941 5.941 21 Si 0.960 3.040 22 H -0.255 1.255 23 H -0.283 1.283 24 H -0.214 1.214 25 C -0.082 4.082 26 H 0.098 0.902 27 C -0.153 4.153 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.423 0.577 38 H 0.209 0.791 39 H 0.209 0.791 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.275 0.725 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.806 -5.236 -13.627 33.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.169 4.169 7 C 0.039 3.961 8 H 0.077 0.923 9 N -0.346 5.346 10 C 0.317 3.683 11 O -0.464 6.464 12 C -0.771 4.771 13 S 2.619 3.381 14 O -0.986 6.986 15 O -0.986 6.986 16 C -0.600 4.600 17 C -0.596 4.596 18 H 0.045 0.955 19 C -0.186 4.186 20 N -0.579 5.579 21 Si 0.779 3.221 22 H -0.179 1.179 23 H -0.209 1.209 24 H -0.136 1.136 25 C -0.101 4.101 26 H 0.117 0.883 27 C -0.210 4.210 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.262 0.738 38 H 0.226 0.774 39 H 0.226 0.774 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -28.703 -4.017 -14.374 32.351 hybrid contribution 0.365 -0.660 1.008 1.259 sum -28.338 -4.677 -13.366 31.679 Atomic orbital electron populations 1.21839 0.93480 1.02591 1.02192 1.21127 0.96723 0.98999 0.93576 0.92274 1.21605 0.93811 1.01563 0.97713 1.21496 0.96943 1.00152 0.96971 1.21927 0.99691 1.00722 0.94589 1.21176 0.95266 0.96033 0.83670 0.92262 1.45743 1.15849 1.43478 1.29487 1.19715 0.82817 0.81535 0.84226 1.90867 1.57316 1.36122 1.62091 1.30707 1.24272 1.15695 1.06462 1.07386 0.77245 0.76235 0.77191 1.93423 1.63348 1.84654 1.57220 1.93422 1.86884 1.33734 1.84610 1.28085 1.04684 1.11589 1.15608 1.20406 0.99487 1.25703 1.13996 0.95515 1.26243 0.96130 0.99118 0.97129 1.70056 1.18586 1.44176 1.25080 0.85543 0.81348 0.78184 0.77044 1.17912 1.20862 1.13571 1.21383 0.90809 1.01843 0.96023 0.88337 1.21946 1.02198 0.99926 0.96979 0.92071 0.92314 0.91670 0.90557 0.90991 0.90969 0.93165 0.94445 0.89739 0.73774 0.77411 0.77364 0.85816 0.85999 0.91572 0.94137 0.90330 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.84 71.98 0.64 -0.46 16 2 C -0.09 -0.93 2.25 -10.80 -0.02 -0.95 16 3 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.11 -1.16 5.20 30.59 0.16 -1.00 16 5 C -0.12 -1.81 5.92 30.59 0.18 -1.63 16 6 C -0.13 -2.43 5.49 30.59 0.17 -2.27 16 7 C 0.14 2.68 1.90 44.98 0.09 2.76 16 8 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 9 N -0.69 -12.60 4.39 -442.61 -1.94 -14.54 16 10 C 0.53 15.18 7.81 87.65 0.68 15.86 16 11 O -0.58 -24.04 15.29 -0.17 0.00 -24.05 16 12 C -0.64 -14.49 6.29 71.23 0.45 -14.04 16 13 S 2.43 101.60 3.88 -56.49 -0.22 101.39 16 14 O -0.99 -50.47 17.95 -125.74 -2.26 -52.73 16 15 O -0.99 -50.48 17.95 -125.76 -2.26 -52.74 16 16 C -0.47 -19.21 4.63 71.24 0.33 -18.88 16 17 C -0.56 -32.42 9.68 25.60 0.25 -32.17 16 18 H 0.03 1.81 7.96 -2.91 -0.02 1.79 16 19 C 0.01 0.79 5.47 84.66 0.46 1.25 16 20 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 21 Si 0.96 39.11 27.47 68.60 1.88 40.99 16 22 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.21 -6.99 6.54 99.48 0.65 -6.33 16 25 C -0.08 -0.93 1.82 -10.81 -0.02 -0.95 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 C -0.15 -1.75 8.68 71.98 0.63 -1.13 16 28 H 0.06 0.46 6.43 -2.39 -0.02 0.44 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.42 3.86 8.37 -92.71 -0.78 3.08 16 38 H 0.21 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.21 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.12 4.15 7.20 -2.39 -0.02 4.13 16 41 H 0.12 4.04 7.57 -2.39 -0.02 4.02 16 42 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.65 6.43 -2.39 -0.02 0.63 16 45 H 0.06 0.64 7.43 -2.39 -0.02 0.63 16 Total: -1.00 -95.18 368.75 -0.37 -95.55 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.14 Total: 18.23 kcal Atomic # 6 Polarization: -57.58 SS G_CDS: 3.98 Total: -53.59 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.64 Total: -73.05 kcal Atomic # 8 Polarization: -125.00 SS G_CDS: -4.52 Total: -129.52 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.88 Total: 40.99 kcal Atomic # 16 Polarization: 101.60 SS G_CDS: -0.22 Total: 101.39 kcal Total: -95.18 -0.37 -95.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.245 kcal (2) G-P(sol) polarization free energy of solvation -95.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds