Wall clock time and date at job start Tue Mar 31 2020 13:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47186 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00223 * 2 1 3 5 5 H 1.08003 * 119.99529 * 240.00056 * 4 2 1 6 6 C 1.37869 * 120.00284 * 59.99716 * 4 2 1 7 7 N 1.31517 * 119.99780 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00231 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47326 * 59.99723 * 8 6 4 10 10 H 1.48499 * 109.47349 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46761 * 299.99832 * 8 6 4 12 12 N 1.46499 * 109.47294 * 119.99692 * 2 1 3 13 13 C 1.34775 * 120.00241 * 275.00112 * 12 2 1 14 14 O 1.21587 * 120.00112 * 0.02562 * 13 12 2 15 15 C 1.47610 * 119.99823 * 179.97438 * 13 12 2 16 16 C 1.39720 * 120.03517 * 0.02562 * 15 13 12 17 17 C 1.37837 * 120.11502 * 180.48886 * 16 15 13 18 18 C 1.38776 * 120.04704 * 359.75333 * 17 16 15 19 19 C 1.39840 * 120.13076 * 359.37184 * 18 17 16 20 20 C 1.38114 * 120.03883 * 1.24596 * 19 18 17 21 21 N 1.40018 * 119.42498 * 182.68714 * 19 18 17 22 22 C 1.46418 * 118.86156 * 71.60364 * 21 19 18 23 23 H 1.08997 * 109.41846 * 197.38831 * 22 21 19 24 24 C 1.53002 * 109.35106 * 77.56541 * 22 21 19 25 25 C 1.52934 * 109.82431 * 317.49615 * 22 21 19 26 26 C 1.50592 * 110.08453 * 316.35654 * 25 22 21 27 27 O 1.21291 * 119.78368 * 255.69348 * 26 25 22 28 28 N 1.35029 * 120.43000 * 75.66634 * 26 25 22 29 29 H 1.09001 * 109.46842 * 299.99712 * 1 2 3 30 30 H 1.08995 * 109.47457 * 60.00335 * 1 2 3 31 31 H 1.09002 * 109.47186 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00111 * 179.97438 * 7 6 4 33 33 H 0.97004 * 119.99667 * 94.99637 * 12 2 1 34 34 H 1.07999 * 119.94112 * 0.46417 * 16 15 13 35 35 H 1.07997 * 119.97502 * 179.73346 * 17 16 15 36 36 H 1.07994 * 120.13868 * 179.30203 * 20 19 18 37 37 H 0.97000 * 120.56683 * 251.63443 * 21 19 18 38 38 H 1.09000 * 109.47027 * 299.67150 * 24 22 21 39 39 H 1.08991 * 109.47078 * 59.67607 * 24 22 21 40 40 H 1.09007 * 109.47111 * 179.68019 * 24 22 21 41 41 H 1.09001 * 109.36981 * 196.16814 * 25 22 21 42 42 H 1.09005 * 109.26995 * 76.47586 * 25 22 21 43 43 H 0.97001 * 119.73596 * 175.35873 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8575 1.1614 2.4119 15 6 2.6387 -0.7142 3.5625 16 6 2.9712 -2.0698 3.5005 17 6 3.4208 -2.7238 4.6275 18 6 3.5491 -2.0355 5.8257 19 6 3.2354 -0.6742 5.8902 20 6 2.7724 -0.0174 4.7670 21 7 3.4239 0.0188 7.0922 22 6 4.7894 0.3071 7.5351 23 1 4.7807 0.5599 8.5953 24 6 5.3433 1.4879 6.7352 25 6 5.6766 -0.9186 7.3122 26 6 4.9542 -2.1660 7.7479 27 8 5.2545 -2.7019 8.7937 28 7 3.9740 -2.6915 6.9821 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7095 1.1618 -3.4844 33 1 2.2490 -1.6317 1.1526 34 1 2.8754 -2.6063 2.5681 35 1 3.6731 -3.7727 4.5781 36 1 2.5190 1.0312 4.8179 37 1 2.6630 0.3028 7.6225 38 1 5.3549 1.2351 5.6750 39 1 4.7117 2.3620 6.8933 40 1 6.3579 1.7079 7.0674 41 1 6.5938 -0.8111 7.8912 42 1 5.9243 -0.9955 6.2534 43 1 3.5617 -3.5314 7.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906460762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:08 Heat of formation + Delta-G solvation = -39.453045 kcal Electronic energy + Delta-G solvation = -26279.858954 eV Core-core repulsion = 22517.688078 eV Total energy + Delta-G solvation = -3762.170876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.17648 -39.44820 -38.22403 -36.62625 -35.11200 -34.79171 -32.65718 -32.07944 -30.31083 -29.21072 -28.33306 -27.85602 -25.29470 -24.03471 -23.01120 -21.65538 -20.75384 -20.62858 -19.48613 -18.28220 -17.76100 -17.35504 -16.75624 -16.25770 -15.78025 -15.36967 -15.11932 -14.67582 -14.48809 -14.30831 -14.18451 -13.81458 -13.42722 -13.33546 -13.07252 -12.73972 -12.51445 -12.47847 -12.24479 -12.04054 -11.72784 -11.62385 -11.19457 -11.13184 -10.99306 -10.79654 -10.46897 -10.35949 -10.26418 -10.14183 -9.32736 -9.18154 -9.09108 -8.70906 -8.58298 -8.14154 -7.92924 -6.15446 -4.25259 0.71802 1.19470 2.23923 2.88462 3.08759 3.23458 3.28902 3.29503 3.32985 4.00088 4.05319 4.18601 4.34526 4.46511 4.65391 4.71237 5.01225 5.08248 5.13182 5.14396 5.17090 5.28000 5.36311 5.43453 5.49858 5.65118 5.75029 5.99123 6.05020 6.10768 6.30636 6.44848 6.54608 6.79715 6.90153 6.93071 7.11048 7.20463 7.39143 7.51453 7.65290 7.67458 7.81405 7.87418 8.11148 8.58994 8.73060 9.03427 9.42275 10.90506 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.002818 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.837924 B = 9933.588936 C =10352.964474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.541 3.459 14 O -0.550 6.550 15 C -0.115 4.115 16 C -0.077 4.077 17 C -0.131 4.131 18 C 0.130 3.870 19 C 0.145 3.855 20 C -0.058 4.058 21 N -0.785 5.785 22 C 0.175 3.825 23 H 0.087 0.913 24 C -0.169 4.169 25 C -0.157 4.157 26 C 0.536 3.464 27 O -0.540 6.540 28 N -0.666 5.666 29 H 0.015 0.985 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.597 -5.003 18.081 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.348 5.348 13 C 0.326 3.674 14 O -0.430 6.430 15 C -0.120 4.120 16 C -0.096 4.096 17 C -0.151 4.151 18 C 0.034 3.966 19 C 0.048 3.952 20 C -0.079 4.079 21 N -0.432 5.432 22 C 0.069 3.931 23 H 0.105 0.895 24 C -0.228 4.228 25 C -0.198 4.198 26 C 0.325 3.675 27 O -0.416 6.416 28 N -0.314 5.314 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.239 0.761 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.111 0.889 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.739 -4.173 18.424 20.057 hybrid contribution -0.087 -1.253 -0.802 1.491 sum 6.653 -5.426 17.622 19.602 Atomic orbital electron populations 1.22085 0.98329 0.99205 1.01005 1.18781 0.91100 0.94044 0.79773 0.93190 1.21169 1.32649 1.13324 0.90314 0.92086 1.24880 0.94759 0.94939 0.99054 1.69892 1.35718 1.22357 1.24056 0.86502 0.79186 0.79589 0.81788 1.20134 1.21119 1.20145 1.46505 1.64337 1.13545 1.10404 1.18138 0.79071 0.86834 0.83350 1.90744 1.51549 1.15609 1.85079 1.20304 1.02526 0.94093 0.95037 1.21258 0.96434 0.93502 0.98441 1.20835 1.02901 1.00670 0.90734 1.18225 1.00190 0.91735 0.86476 1.17314 1.01022 0.89128 0.87706 1.21483 0.96313 1.00524 0.89628 1.44031 1.05757 1.69460 1.23915 1.20608 0.81758 0.92035 0.98698 0.89526 1.22332 1.00958 0.98254 1.01263 1.22246 1.00167 0.92767 1.04618 1.20648 0.78595 0.85454 0.82820 1.90753 1.65507 1.62460 1.22897 1.43426 1.37896 1.26044 1.24020 0.96558 0.89069 0.95407 0.92464 0.77835 0.84678 0.84958 0.84038 0.76084 0.91926 0.91664 0.91894 0.87402 0.88882 0.75420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.43 11.32 55.43 0.63 -23.80 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.70 -14.03 5.02 -55.95 -0.28 -14.31 16 13 C 0.54 10.50 7.73 -12.44 -0.10 10.40 16 14 O -0.55 -12.79 16.00 5.29 0.08 -12.71 16 15 C -0.12 -1.67 5.88 -104.94 -0.62 -2.29 16 16 C -0.08 -0.88 9.53 -39.17 -0.37 -1.26 16 17 C -0.13 -1.25 9.96 -39.53 -0.39 -1.65 16 18 C 0.13 1.31 5.57 -83.53 -0.47 0.84 16 19 C 0.14 1.55 5.45 -83.56 -0.46 1.10 16 20 C -0.06 -0.76 9.52 -39.04 -0.37 -1.13 16 21 N -0.79 -7.01 4.83 -52.12 -0.25 -7.27 16 22 C 0.17 1.38 3.55 -68.01 -0.24 1.14 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 C -0.17 -1.31 9.30 37.16 0.35 -0.96 16 25 C -0.16 -1.34 4.82 -27.97 -0.13 -1.48 16 26 C 0.54 5.82 7.00 -10.92 -0.08 5.75 16 27 O -0.54 -7.64 17.92 5.55 0.10 -7.54 16 28 N -0.67 -6.30 5.23 -9.71 -0.05 -6.35 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.39 6.58 6.55 -40.82 -0.27 6.31 16 34 H 0.14 1.38 6.38 -52.49 -0.33 1.05 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.14 1.99 7.65 -52.49 -0.40 1.58 16 37 H 0.40 3.20 8.96 -40.82 -0.37 2.84 16 38 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 0.79 8.13 -51.93 -0.42 0.37 16 42 H 0.09 0.81 7.50 -51.93 -0.39 0.42 16 43 H 0.41 3.34 8.91 -40.82 -0.36 2.97 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -31.90 355.95 -8.29 -40.18 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.75 Total: 10.14 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -3.11 Total: 1.14 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.04 Total: -51.73 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.18 Total: -20.25 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.90 -8.29 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906460762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.729 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds