Wall clock time and date at job start Tue Mar 31 2020 13:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47186 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00223 * 2 1 3 5 5 H 1.08003 * 119.99529 * 240.00056 * 4 2 1 6 6 C 1.37869 * 120.00284 * 59.99716 * 4 2 1 7 7 N 1.31517 * 119.99780 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00231 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47326 * 59.99723 * 8 6 4 10 10 H 1.48499 * 109.47349 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46761 * 299.99832 * 8 6 4 12 12 N 1.46499 * 109.47294 * 119.99692 * 2 1 3 13 13 C 1.34775 * 120.00241 * 275.00112 * 12 2 1 14 14 O 1.21587 * 120.00112 * 0.02562 * 13 12 2 15 15 C 1.47610 * 119.99823 * 179.97438 * 13 12 2 16 16 C 1.39720 * 120.03517 * 0.02562 * 15 13 12 17 17 C 1.37837 * 120.11502 * 180.48886 * 16 15 13 18 18 C 1.38776 * 120.04704 * 359.75333 * 17 16 15 19 19 C 1.39840 * 120.13076 * 359.37184 * 18 17 16 20 20 C 1.38114 * 120.03883 * 1.24596 * 19 18 17 21 21 N 1.40018 * 119.42498 * 182.68714 * 19 18 17 22 22 C 1.46418 * 118.86156 * 71.60364 * 21 19 18 23 23 H 1.08997 * 109.41846 * 197.38831 * 22 21 19 24 24 C 1.53002 * 109.35106 * 77.56541 * 22 21 19 25 25 C 1.52934 * 109.82431 * 317.49615 * 22 21 19 26 26 C 1.50592 * 110.08453 * 316.35654 * 25 22 21 27 27 O 1.21291 * 119.78368 * 255.69348 * 26 25 22 28 28 N 1.35029 * 120.43000 * 75.66634 * 26 25 22 29 29 H 1.09001 * 109.46842 * 299.99712 * 1 2 3 30 30 H 1.08995 * 109.47457 * 60.00335 * 1 2 3 31 31 H 1.09002 * 109.47186 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00111 * 179.97438 * 7 6 4 33 33 H 0.97004 * 119.99667 * 94.99637 * 12 2 1 34 34 H 1.07999 * 119.94112 * 0.46417 * 16 15 13 35 35 H 1.07997 * 119.97502 * 179.73346 * 17 16 15 36 36 H 1.07994 * 120.13868 * 179.30203 * 20 19 18 37 37 H 0.97000 * 120.56683 * 251.63443 * 21 19 18 38 38 H 1.09000 * 109.47027 * 299.67150 * 24 22 21 39 39 H 1.08991 * 109.47078 * 59.67607 * 24 22 21 40 40 H 1.09007 * 109.47111 * 179.68019 * 24 22 21 41 41 H 1.09001 * 109.36981 * 196.16814 * 25 22 21 42 42 H 1.09005 * 109.26995 * 76.47586 * 25 22 21 43 43 H 0.97001 * 119.73596 * 175.35873 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8575 1.1614 2.4119 15 6 2.6387 -0.7142 3.5625 16 6 2.9712 -2.0698 3.5005 17 6 3.4208 -2.7238 4.6275 18 6 3.5491 -2.0355 5.8257 19 6 3.2354 -0.6742 5.8902 20 6 2.7724 -0.0174 4.7670 21 7 3.4239 0.0188 7.0922 22 6 4.7894 0.3071 7.5351 23 1 4.7807 0.5599 8.5953 24 6 5.3433 1.4879 6.7352 25 6 5.6766 -0.9186 7.3122 26 6 4.9542 -2.1660 7.7479 27 8 5.2545 -2.7019 8.7937 28 7 3.9740 -2.6915 6.9821 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7095 1.1618 -3.4844 33 1 2.2490 -1.6317 1.1526 34 1 2.8754 -2.6063 2.5681 35 1 3.6731 -3.7727 4.5781 36 1 2.5190 1.0312 4.8179 37 1 2.6630 0.3028 7.6225 38 1 5.3549 1.2351 5.6750 39 1 4.7117 2.3620 6.8933 40 1 6.3579 1.7079 7.0674 41 1 6.5938 -0.8111 7.8912 42 1 5.9243 -0.9955 6.2534 43 1 3.5617 -3.5314 7.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906460762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:08 Heat of formation + Delta-G solvation = -62.424324 kcal Electronic energy + Delta-G solvation = -26280.855063 eV Core-core repulsion = 22517.688078 eV Total energy + Delta-G solvation = -3763.166985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.05547 -40.77978 -39.38706 -37.43464 -36.74527 -35.96110 -34.37088 -33.07453 -31.51629 -30.63364 -29.10293 -28.87810 -27.32554 -25.18464 -23.95522 -22.87570 -22.10397 -21.42517 -20.95486 -19.43457 -18.86466 -18.24938 -17.84454 -17.52609 -17.25981 -16.56099 -16.47810 -15.91788 -15.71624 -15.55463 -15.36788 -14.85272 -14.68670 -14.39931 -14.15648 -13.95178 -13.83535 -13.54242 -13.32527 -13.03236 -12.97796 -12.85046 -12.75231 -12.70932 -12.53800 -12.24691 -12.14278 -11.89694 -11.40660 -11.10552 -11.03112 -10.87685 -10.57286 -10.10828 -9.83948 -9.54858 -8.92139 -8.15756 -6.33564 -0.30083 0.30229 1.35850 1.47533 1.49476 1.57168 1.92894 2.08214 2.32982 2.50389 2.69141 2.84966 3.15076 3.39252 3.79518 3.84765 3.90892 4.01275 4.16101 4.33416 4.36605 4.48499 4.53172 4.66937 4.76723 4.81382 4.93540 4.95065 5.01693 5.09797 5.14029 5.16565 5.33292 5.38262 5.45632 5.50770 5.61289 5.70288 5.75754 5.92200 6.07966 6.10667 6.42647 6.73663 6.93928 6.96390 7.00220 7.33104 7.52211 8.90486 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.002818 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.837924 B = 9933.588936 C =10352.964474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.262 1.262 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.696 5.696 13 C 0.539 3.461 14 O -0.599 6.599 15 C -0.136 4.136 16 C -0.068 4.068 17 C -0.115 4.115 18 C 0.142 3.858 19 C 0.151 3.849 20 C -0.064 4.064 21 N -0.785 5.785 22 C 0.176 3.824 23 H 0.103 0.897 24 C -0.165 4.165 25 C -0.155 4.155 26 C 0.537 3.463 27 O -0.573 6.573 28 N -0.657 5.657 29 H 0.011 0.989 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.123 0.877 37 H 0.407 0.593 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.979 -7.648 19.009 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.187 1.187 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.345 5.345 13 C 0.327 3.673 14 O -0.482 6.482 15 C -0.140 4.140 16 C -0.088 4.088 17 C -0.135 4.135 18 C 0.045 3.955 19 C 0.054 3.946 20 C -0.086 4.086 21 N -0.432 5.432 22 C 0.070 3.930 23 H 0.121 0.879 24 C -0.223 4.223 25 C -0.196 4.196 26 C 0.327 3.673 27 O -0.452 6.452 28 N -0.305 5.305 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.141 0.859 37 H 0.245 0.755 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.112 0.888 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.126 -6.862 19.377 22.104 hybrid contribution -0.498 -0.404 -0.977 1.168 sum 7.628 -7.266 18.400 21.203 Atomic orbital electron populations 1.21912 0.98255 0.99610 0.99588 1.18365 0.91146 0.91974 0.81756 0.98311 1.21526 1.32707 1.13705 0.90666 0.90526 1.25803 0.94834 0.95558 1.02353 1.70052 1.36978 1.23937 1.24682 0.85391 0.78674 0.78755 0.77485 1.18693 1.21412 1.19514 1.46199 1.64570 1.14246 1.09477 1.18860 0.77759 0.86365 0.84311 1.90709 1.53607 1.17971 1.85955 1.19891 1.05543 0.95444 0.93119 1.21368 0.95584 0.91961 0.99863 1.21084 1.01042 1.01998 0.89384 1.18275 0.98994 0.91325 0.86901 1.17239 1.00235 0.89592 0.87547 1.21357 0.97243 0.99794 0.90173 1.44130 1.06591 1.69326 1.23167 1.20715 0.80919 0.91747 0.99578 0.87854 1.22287 1.02041 0.98054 0.99968 1.22292 1.00641 0.91817 1.04834 1.20984 0.78458 0.85654 0.82237 1.90748 1.66569 1.63517 1.24345 1.43365 1.37453 1.26177 1.23458 0.96972 0.91432 0.93875 0.92556 0.75802 0.83177 0.81559 0.85943 0.75486 0.93906 0.91969 0.90103 0.85901 0.88826 0.74415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.27 13.86 2.56 44.25 0.11 13.98 16 3 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 4 C -0.55 -28.30 8.73 25.60 0.22 -28.08 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -52.11 11.32 21.44 0.24 -51.87 16 8 Si 0.97 40.98 29.54 68.60 2.03 43.01 16 9 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 12 N -0.70 -28.22 5.02 -449.19 -2.25 -30.47 16 13 C 0.54 21.57 7.73 86.72 0.67 22.24 16 14 O -0.60 -29.58 16.00 -3.99 -0.06 -29.64 16 15 C -0.14 -3.90 5.88 -20.07 -0.12 -4.01 16 16 C -0.07 -1.40 9.53 22.53 0.21 -1.19 16 17 C -0.11 -1.78 9.96 22.30 0.22 -1.56 16 18 C 0.14 2.44 5.57 38.42 0.21 2.65 16 19 C 0.15 3.01 5.45 38.19 0.21 3.22 16 20 C -0.06 -1.66 9.52 22.62 0.22 -1.45 16 21 N -0.79 -12.82 4.83 -318.80 -1.54 -14.36 16 22 C 0.18 2.41 3.55 44.99 0.16 2.57 16 23 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 24 C -0.16 -2.33 9.30 71.98 0.67 -1.66 16 25 C -0.15 -2.27 4.82 29.79 0.14 -2.12 16 26 C 0.54 10.29 7.00 87.58 0.61 10.91 16 27 O -0.57 -15.03 17.92 -3.06 -0.05 -15.09 16 28 N -0.66 -10.44 5.23 -302.89 -1.58 -12.02 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 31 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.41 13.32 6.55 -92.71 -0.61 12.71 16 34 H 0.15 2.61 6.38 -2.91 -0.02 2.59 16 35 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.12 3.64 7.65 -2.91 -0.02 3.62 16 37 H 0.41 5.91 8.96 -92.71 -0.83 5.08 16 38 H 0.04 0.78 8.06 -2.39 -0.02 0.76 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.12 1.46 8.13 -2.39 -0.02 1.44 16 42 H 0.09 1.39 7.50 -2.38 -0.02 1.37 16 43 H 0.42 5.45 8.91 -92.71 -0.83 4.62 16 Total: -1.00 -71.83 355.95 0.25 -71.58 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -1.19 Total: 28.25 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.67 Total: 10.61 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -5.13 Total: -108.72 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.12 Total: -44.73 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -71.83 0.25 -71.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906460762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.152 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds