Wall clock time and date at job start Tue Mar 31 2020 13:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21590 * 119.99633 * 0.02562 * 13 12 2 15 15 C 1.47605 * 119.99936 * 180.02562 * 13 12 2 16 16 C 1.39721 * 120.02467 * 359.71938 * 15 13 12 17 17 C 1.37863 * 120.09467 * 179.28334 * 16 15 13 18 18 C 1.38758 * 120.02987 * 0.32122 * 17 16 15 19 19 C 1.39807 * 120.17740 * 0.71821 * 18 17 16 20 20 C 1.38138 * 120.00964 * 358.91486 * 19 18 17 21 21 N 1.40050 * 119.49177 * 177.75808 * 19 18 17 22 22 C 1.46380 * 118.74357 * 288.09947 * 21 19 18 23 23 H 1.09000 * 109.41336 * 162.56839 * 22 21 19 24 24 C 1.52997 * 109.41142 * 282.35692 * 22 21 19 25 25 C 1.52966 * 109.82182 * 42.46105 * 22 21 19 26 26 C 1.50579 * 110.08981 * 43.67968 * 25 22 21 27 27 O 1.21287 * 119.76725 * 104.44270 * 26 25 22 28 28 N 1.35081 * 120.46919 * 284.46996 * 26 25 22 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 33 33 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 34 34 H 1.07999 * 119.95195 * 359.54636 * 16 15 13 35 35 H 1.07999 * 119.97806 * 180.02562 * 17 16 15 36 36 H 1.07996 * 120.13927 * 180.38827 * 20 19 18 37 37 H 0.97001 * 120.62834 * 108.12001 * 21 19 18 38 38 H 1.08999 * 109.47282 * 59.99994 * 24 22 21 39 39 H 1.09001 * 109.46986 * 180.02562 * 24 22 21 40 40 H 1.09001 * 109.47200 * 299.99247 * 24 22 21 41 41 H 1.09004 * 109.36574 * 163.86554 * 25 22 21 42 42 H 1.08999 * 109.36892 * 283.61490 * 25 22 21 43 43 H 0.96996 * 119.73135 * 184.44328 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1616 -2.4116 15 6 2.6387 -0.7143 -3.5624 16 6 2.9763 -2.0686 -3.4989 17 6 3.4215 -2.7238 -4.6272 18 6 3.5415 -2.0371 -5.8270 19 6 3.2262 -0.6766 -5.8927 20 6 2.7724 -0.0174 -4.7667 21 7 3.3975 0.0133 -7.0993 22 6 4.7571 0.3059 -7.5561 23 1 4.7372 0.5542 -8.6173 24 6 5.3139 1.4930 -6.7678 25 6 5.6520 -0.9150 -7.3363 26 6 4.9318 -2.1674 -7.7608 27 8 5.2273 -2.7071 -8.8061 28 7 3.9586 -2.6939 -6.9861 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.7081 1.1610 3.4844 33 1 2.2490 -1.6317 -1.1525 34 1 2.8842 -2.6041 -2.5655 35 1 3.6815 -3.7707 -4.5761 36 1 2.5223 1.0320 -4.8167 37 1 2.6297 0.2923 -7.6224 38 1 5.3317 1.2478 -5.7059 39 1 6.3263 1.7120 -7.1076 40 1 4.6805 2.3653 -6.9289 41 1 6.5636 -0.8055 -7.9240 42 1 5.9097 -0.9889 -6.2798 43 1 3.5464 -3.5353 -7.2369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906460763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:12 Heat of formation + Delta-G solvation = -39.587171 kcal Electronic energy + Delta-G solvation = -26277.367352 eV Core-core repulsion = 22515.190660 eV Total energy + Delta-G solvation = -3762.176692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17476 -39.44822 -38.22458 -36.62745 -35.10997 -34.79143 -32.65592 -32.07680 -30.31035 -29.21201 -28.33613 -27.85729 -25.29805 -24.03284 -23.01088 -21.65624 -20.75509 -20.62742 -19.48682 -18.28502 -17.75913 -17.35088 -16.75808 -16.26019 -15.78334 -15.37169 -15.12180 -14.67467 -14.48595 -14.30649 -14.18359 -13.81290 -13.42670 -13.33392 -13.07222 -12.74060 -12.51479 -12.48646 -12.24715 -12.04138 -11.73789 -11.62760 -11.19461 -11.12574 -11.00444 -10.79721 -10.46770 -10.33381 -10.27489 -10.14154 -9.32606 -9.17856 -9.07600 -8.71005 -8.59139 -8.14459 -7.92992 -6.15927 -4.25485 0.71904 1.19417 2.23865 2.88315 3.09133 3.21418 3.29088 3.31087 3.33058 4.00143 4.05266 4.18626 4.34293 4.46505 4.65227 4.71211 5.01218 5.08278 5.13182 5.14423 5.16884 5.27925 5.36186 5.43448 5.49780 5.65078 5.75022 5.99032 6.04956 6.10703 6.30650 6.44879 6.54669 6.79568 6.90014 6.92988 7.11044 7.20272 7.39067 7.51568 7.65330 7.67630 7.81329 7.87342 8.10913 8.58991 8.73216 9.03458 9.42166 10.90090 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023957 B = 0.002816 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.461839 B = 9941.328760 C =10367.410796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.700 5.700 13 C 0.541 3.459 14 O -0.550 6.550 15 C -0.115 4.115 16 C -0.076 4.076 17 C -0.131 4.131 18 C 0.131 3.869 19 C 0.144 3.856 20 C -0.058 4.058 21 N -0.785 5.785 22 C 0.175 3.825 23 H 0.086 0.914 24 C -0.169 4.169 25 C -0.157 4.157 26 C 0.536 3.464 27 O -0.540 6.540 28 N -0.667 5.667 29 H 0.027 0.973 30 H 0.015 0.985 31 H 0.091 0.909 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.583 -5.012 -18.131 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.348 5.348 13 C 0.326 3.674 14 O -0.430 6.430 15 C -0.120 4.120 16 C -0.096 4.096 17 C -0.152 4.152 18 C 0.034 3.966 19 C 0.048 3.952 20 C -0.079 4.079 21 N -0.431 5.431 22 C 0.069 3.931 23 H 0.105 0.895 24 C -0.228 4.228 25 C -0.198 4.198 26 C 0.325 3.675 27 O -0.416 6.416 28 N -0.314 5.314 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.240 0.760 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.126 0.874 42 H 0.111 0.889 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.726 -4.190 -18.484 20.111 hybrid contribution -0.099 -1.234 0.817 1.483 sum 6.628 -5.424 -17.666 19.633 Atomic orbital electron populations 1.22085 0.98323 0.99207 1.01009 1.18793 0.91110 0.94059 0.79809 0.93183 1.21244 1.32498 1.13275 0.90280 0.91980 1.24885 0.94776 0.94941 0.99080 1.69909 1.35801 1.22457 1.23834 0.86393 0.78613 0.79534 0.82553 1.19710 1.20859 1.20864 1.46504 1.64340 1.13551 1.10395 1.18141 0.79072 0.86835 0.83349 1.90745 1.51571 1.15589 1.85081 1.20300 1.02515 0.94112 0.95053 1.21267 0.96405 0.93501 0.98432 1.20832 1.02935 1.00689 0.90702 1.18218 1.00211 0.91710 0.86436 1.17317 1.01119 0.89171 0.87611 1.21493 0.96277 1.00521 0.89651 1.44027 1.05801 1.69695 1.23621 1.20602 0.81885 0.92019 0.98613 0.89545 1.22332 1.00958 0.98200 1.01326 1.22246 1.00142 0.92711 1.04675 1.20663 0.78532 0.85560 0.82770 1.90752 1.65342 1.62493 1.23021 1.43444 1.38420 1.25893 1.23656 0.95405 0.96560 0.89064 0.92582 0.77832 0.84671 0.84948 0.84040 0.76039 0.91920 0.91894 0.91678 0.87402 0.88885 0.75424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.53 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.40 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.70 -14.02 5.02 -55.95 -0.28 -14.31 16 13 C 0.54 10.49 7.73 -12.44 -0.10 10.40 16 14 O -0.55 -12.79 16.00 5.29 0.08 -12.71 16 15 C -0.12 -1.68 5.88 -104.94 -0.62 -2.29 16 16 C -0.08 -0.88 9.53 -39.16 -0.37 -1.25 16 17 C -0.13 -1.26 9.97 -39.53 -0.39 -1.65 16 18 C 0.13 1.31 5.58 -83.54 -0.47 0.85 16 19 C 0.14 1.55 5.43 -83.55 -0.45 1.09 16 20 C -0.06 -0.75 9.52 -39.04 -0.37 -1.13 16 21 N -0.79 -7.01 4.84 -52.12 -0.25 -7.26 16 22 C 0.17 1.38 3.55 -68.01 -0.24 1.13 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 C -0.17 -1.30 9.31 37.16 0.35 -0.96 16 25 C -0.16 -1.34 4.82 -27.96 -0.13 -1.48 16 26 C 0.54 5.82 7.01 -10.91 -0.08 5.74 16 27 O -0.54 -7.64 17.92 5.55 0.10 -7.54 16 28 N -0.67 -6.30 5.23 -9.72 -0.05 -6.35 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.39 6.58 6.55 -40.82 -0.27 6.31 16 34 H 0.14 1.38 6.38 -52.49 -0.33 1.05 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 1.99 7.65 -52.49 -0.40 1.58 16 37 H 0.40 3.21 8.96 -40.82 -0.37 2.84 16 38 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.11 0.79 8.13 -51.93 -0.42 0.37 16 42 H 0.09 0.81 7.51 -51.93 -0.39 0.42 16 43 H 0.41 3.34 8.91 -40.82 -0.36 2.97 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -31.92 355.95 -8.28 -40.20 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.75 Total: 10.07 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -3.11 Total: 1.15 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.04 Total: -51.69 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.18 Total: -20.24 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.92 -8.28 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906460763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.614 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds