Wall clock time and date at job start Tue Mar 31 2020 13:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21590 * 119.99633 * 0.02562 * 13 12 2 15 15 C 1.47605 * 119.99936 * 180.02562 * 13 12 2 16 16 C 1.39721 * 120.02467 * 359.71938 * 15 13 12 17 17 C 1.37863 * 120.09467 * 179.28334 * 16 15 13 18 18 C 1.38758 * 120.02987 * 0.32122 * 17 16 15 19 19 C 1.39807 * 120.17740 * 0.71821 * 18 17 16 20 20 C 1.38138 * 120.00964 * 358.91486 * 19 18 17 21 21 N 1.40050 * 119.49177 * 177.75808 * 19 18 17 22 22 C 1.46380 * 118.74357 * 288.09947 * 21 19 18 23 23 H 1.09000 * 109.41336 * 162.56839 * 22 21 19 24 24 C 1.52997 * 109.41142 * 282.35692 * 22 21 19 25 25 C 1.52966 * 109.82182 * 42.46105 * 22 21 19 26 26 C 1.50579 * 110.08981 * 43.67968 * 25 22 21 27 27 O 1.21287 * 119.76725 * 104.44270 * 26 25 22 28 28 N 1.35081 * 120.46919 * 284.46996 * 26 25 22 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 33 33 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 34 34 H 1.07999 * 119.95195 * 359.54636 * 16 15 13 35 35 H 1.07999 * 119.97806 * 180.02562 * 17 16 15 36 36 H 1.07996 * 120.13927 * 180.38827 * 20 19 18 37 37 H 0.97001 * 120.62834 * 108.12001 * 21 19 18 38 38 H 1.08999 * 109.47282 * 59.99994 * 24 22 21 39 39 H 1.09001 * 109.46986 * 180.02562 * 24 22 21 40 40 H 1.09001 * 109.47200 * 299.99247 * 24 22 21 41 41 H 1.09004 * 109.36574 * 163.86554 * 25 22 21 42 42 H 1.08999 * 109.36892 * 283.61490 * 25 22 21 43 43 H 0.96996 * 119.73135 * 184.44328 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1616 -2.4116 15 6 2.6387 -0.7143 -3.5624 16 6 2.9763 -2.0686 -3.4989 17 6 3.4215 -2.7238 -4.6272 18 6 3.5415 -2.0371 -5.8270 19 6 3.2262 -0.6766 -5.8927 20 6 2.7724 -0.0174 -4.7667 21 7 3.3975 0.0133 -7.0993 22 6 4.7571 0.3059 -7.5561 23 1 4.7372 0.5542 -8.6173 24 6 5.3139 1.4930 -6.7678 25 6 5.6520 -0.9150 -7.3363 26 6 4.9318 -2.1674 -7.7608 27 8 5.2273 -2.7071 -8.8061 28 7 3.9586 -2.6939 -6.9861 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.7081 1.1610 3.4844 33 1 2.2490 -1.6317 -1.1525 34 1 2.8842 -2.6041 -2.5655 35 1 3.6815 -3.7707 -4.5761 36 1 2.5223 1.0320 -4.8167 37 1 2.6297 0.2923 -7.6224 38 1 5.3317 1.2478 -5.7059 39 1 6.3263 1.7120 -7.1076 40 1 4.6805 2.3653 -6.9289 41 1 6.5636 -0.8055 -7.9240 42 1 5.9097 -0.9889 -6.2798 43 1 3.5464 -3.5353 -7.2369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906460763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:11 Heat of formation + Delta-G solvation = -62.574082 kcal Electronic energy + Delta-G solvation = -26278.364140 eV Core-core repulsion = 22515.190660 eV Total energy + Delta-G solvation = -3763.173479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05334 -40.77886 -39.38707 -37.43516 -36.74555 -35.95743 -34.37116 -33.06854 -31.51552 -30.63307 -29.10491 -28.87882 -27.32890 -25.18250 -23.95411 -22.87582 -22.10382 -21.42359 -20.95442 -19.43696 -18.86375 -18.24492 -17.84850 -17.52797 -17.26249 -16.55900 -16.47721 -15.91483 -15.71284 -15.55315 -15.36836 -14.85310 -14.68481 -14.40476 -14.15601 -13.95070 -13.83975 -13.54747 -13.32561 -13.03315 -12.97296 -12.86698 -12.74910 -12.72205 -12.54019 -12.26226 -12.09953 -11.89502 -11.40577 -11.08223 -11.03029 -10.87904 -10.59124 -10.10155 -9.83854 -9.54889 -8.92413 -8.16140 -6.33640 -0.29937 0.30230 1.35859 1.46495 1.47727 1.59525 1.93029 2.08098 2.32962 2.50304 2.69283 2.84782 3.14961 3.39359 3.79605 3.84815 3.90928 4.01215 4.16141 4.33521 4.36599 4.48720 4.53227 4.66923 4.76722 4.81450 4.93541 4.95099 5.01851 5.09838 5.14016 5.16588 5.33315 5.38331 5.45760 5.50847 5.61647 5.70280 5.75836 5.92123 6.07894 6.10668 6.42517 6.74079 6.93972 6.96576 7.00211 7.33113 7.52225 8.90502 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023957 B = 0.002816 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.461839 B = 9941.328760 C =10367.410796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.257 1.257 10 H -0.285 1.285 11 H -0.280 1.280 12 N -0.696 5.696 13 C 0.539 3.461 14 O -0.599 6.599 15 C -0.136 4.136 16 C -0.068 4.068 17 C -0.115 4.115 18 C 0.142 3.858 19 C 0.150 3.850 20 C -0.064 4.064 21 N -0.785 5.785 22 C 0.176 3.824 23 H 0.103 0.897 24 C -0.165 4.165 25 C -0.155 4.155 26 C 0.537 3.463 27 O -0.573 6.573 28 N -0.658 5.658 29 H 0.042 0.958 30 H 0.011 0.989 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.123 0.877 37 H 0.408 0.592 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -7.645 -19.075 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.181 1.181 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.345 5.345 13 C 0.327 3.673 14 O -0.482 6.482 15 C -0.140 4.140 16 C -0.087 4.087 17 C -0.135 4.135 18 C 0.046 3.954 19 C 0.053 3.947 20 C -0.086 4.086 21 N -0.432 5.432 22 C 0.070 3.930 23 H 0.121 0.879 24 C -0.224 4.224 25 C -0.196 4.196 26 C 0.327 3.673 27 O -0.452 6.452 28 N -0.305 5.305 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.141 0.859 37 H 0.246 0.754 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.141 0.859 42 H 0.112 0.888 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.119 -6.867 -19.452 22.169 hybrid contribution -0.513 -0.387 0.999 1.187 sum 7.606 -7.254 -18.453 21.237 Atomic orbital electron populations 1.21912 0.98253 0.99619 0.99587 1.18377 0.91154 0.91993 0.81785 0.98291 1.21581 1.32535 1.13607 0.90626 0.90520 1.25803 0.94870 0.95568 1.02364 1.70061 1.37029 1.24020 1.24549 0.85288 0.78062 0.78572 0.78359 1.18077 1.21149 1.20549 1.46198 1.64572 1.14249 1.09469 1.18862 0.77762 0.86365 0.84308 1.90710 1.53629 1.17950 1.85956 1.19887 1.05529 0.95461 0.93136 1.21375 0.95552 0.91967 0.99853 1.21081 1.01084 1.02004 0.89355 1.18268 0.99014 0.91301 0.86866 1.17243 1.00332 0.89626 0.87455 1.21367 0.97206 0.99790 0.90197 1.44127 1.06638 1.69562 1.22868 1.20709 0.81053 0.91733 0.99486 0.87880 1.22287 1.02035 0.98005 1.00033 1.22294 1.00606 0.91747 1.04912 1.21001 0.78385 0.85770 0.82186 1.90746 1.66413 1.63547 1.24465 1.43383 1.37976 1.26030 1.23095 0.93860 0.96974 0.91437 0.92575 0.75804 0.83177 0.81554 0.85945 0.75444 0.93893 0.90107 0.91968 0.85902 0.88823 0.74424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.27 13.81 2.56 44.25 0.11 13.93 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.55 -28.14 8.73 25.60 0.22 -27.91 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -52.05 11.32 21.44 0.24 -51.81 16 8 Si 0.97 41.02 29.54 68.60 2.03 43.05 16 9 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 12 N -0.70 -28.19 5.02 -449.18 -2.25 -30.44 16 13 C 0.54 21.55 7.73 86.72 0.67 22.22 16 14 O -0.60 -29.56 16.00 -4.00 -0.06 -29.63 16 15 C -0.14 -3.90 5.88 -20.07 -0.12 -4.02 16 16 C -0.07 -1.40 9.53 22.54 0.21 -1.18 16 17 C -0.12 -1.78 9.97 22.31 0.22 -1.56 16 18 C 0.14 2.45 5.58 38.41 0.21 2.66 16 19 C 0.15 3.00 5.43 38.18 0.21 3.21 16 20 C -0.06 -1.66 9.52 22.62 0.22 -1.45 16 21 N -0.79 -12.80 4.84 -318.81 -1.54 -14.34 16 22 C 0.18 2.40 3.55 45.00 0.16 2.56 16 23 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 24 C -0.16 -2.32 9.31 71.98 0.67 -1.65 16 25 C -0.15 -2.26 4.82 29.80 0.14 -2.12 16 26 C 0.54 10.29 7.01 87.57 0.61 10.90 16 27 O -0.57 -15.03 17.92 -3.05 -0.05 -15.08 16 28 N -0.66 -10.44 5.23 -302.86 -1.58 -12.03 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 3.71 6.07 -2.38 -0.01 3.70 16 32 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 33 H 0.41 13.32 6.55 -92.71 -0.61 12.71 16 34 H 0.15 2.61 6.38 -2.91 -0.02 2.59 16 35 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.12 3.64 7.65 -2.91 -0.02 3.62 16 37 H 0.41 5.91 8.96 -92.71 -0.83 5.08 16 38 H 0.04 0.78 8.06 -2.39 -0.02 0.76 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.12 1.45 8.13 -2.38 -0.02 1.43 16 42 H 0.09 1.38 7.51 -2.39 -0.02 1.37 16 43 H 0.42 5.45 8.91 -92.71 -0.83 4.63 16 Total: -1.00 -71.83 355.95 0.25 -71.58 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -1.19 Total: 28.02 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 4.67 Total: 10.68 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -5.14 Total: -108.62 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.12 Total: -44.71 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -71.83 0.25 -71.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906460763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.007 kcal (2) G-P(sol) polarization free energy of solvation -71.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds