Wall clock time and date at job start Tue Mar 31 2020 11:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47533 * 2 1 4 4 N 1.46499 * 109.47309 * 120.00750 * 2 1 3 5 5 C 1.46506 * 119.99803 * 294.08401 * 4 2 1 6 6 C 1.50704 * 109.46829 * 270.00444 * 5 4 2 7 7 H 1.07996 * 120.00159 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99388 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00436 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99527 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47151 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47026 * 119.99872 * 10 8 6 13 13 H 1.48501 * 109.46960 * 239.99852 * 10 8 6 14 14 C 1.34772 * 120.00503 * 114.08006 * 4 2 1 15 15 O 1.21592 * 120.00126 * 184.17342 * 14 4 2 16 16 C 1.47527 * 119.99907 * 4.18227 * 14 4 2 17 17 C 1.39430 * 120.24667 * 304.61188 * 16 14 4 18 18 C 1.38290 * 120.28273 * 180.02562 * 17 16 14 19 19 C 1.37879 * 120.72782 * 0.02562 * 18 17 16 20 20 C 1.39677 * 120.10537 * 359.97438 * 19 18 17 21 21 N 1.35856 * 133.50955 * 179.97438 * 20 19 18 22 22 C 1.30095 * 109.53466 * 180.02562 * 21 20 19 23 23 C 1.50700 * 124.97301 * 180.02562 * 22 21 20 24 24 O 1.42897 * 109.46861 * 180.02562 * 23 22 21 25 25 N 1.36118 * 110.04884 * 0.26069 * 22 21 20 26 26 H 0.97003 * 126.31209 * 179.69182 * 25 22 21 27 27 C 1.37517 * 107.38681 * 359.57712 * 25 22 21 28 28 H 1.09003 * 109.47183 * 299.99653 * 1 2 3 29 29 H 1.09004 * 109.47613 * 59.99691 * 1 2 3 30 30 H 1.09003 * 109.47639 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46752 * 240.00043 * 2 1 3 32 32 H 1.08999 * 109.47240 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47419 * 300.00546 * 3 2 1 34 34 H 1.09005 * 109.47066 * 60.00236 * 3 2 1 35 35 H 1.08997 * 109.46946 * 29.99528 * 5 4 2 36 36 H 1.08991 * 109.47134 * 149.99584 * 5 4 2 37 37 H 0.97005 * 120.00319 * 179.97438 * 9 8 6 38 38 H 1.08000 * 119.86013 * 359.97438 * 17 16 14 39 39 H 1.07999 * 119.63452 * 179.97438 * 18 17 16 40 40 H 1.08000 * 119.94581 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47266 * 60.02453 * 23 22 21 42 42 H 1.08995 * 109.47105 * 300.02046 * 23 22 21 43 43 H 0.96699 * 114.00200 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.7743 -0.1194 2.5229 6 6 2.9136 0.7950 2.8932 7 1 3.7372 0.9360 2.2089 8 6 2.9049 1.4506 4.1061 9 7 1.9023 1.2785 4.9395 10 14 4.3175 2.5835 4.5655 11 1 5.3134 2.6046 3.4641 12 1 3.7980 3.9564 4.7901 13 1 4.9642 2.0895 5.8076 14 6 2.6919 -1.8518 1.0759 15 8 3.0310 -2.4637 2.0705 16 6 3.0181 -2.3804 -0.2622 17 6 2.0078 -2.5893 -1.2002 18 6 2.3127 -3.0852 -2.4547 19 6 3.6149 -3.3808 -2.7980 20 6 4.6452 -3.1805 -1.8764 21 7 5.9893 -3.3729 -1.9197 22 6 6.5151 -3.0277 -0.7809 23 6 7.9836 -3.0998 -0.4502 24 8 8.1937 -2.6418 0.8870 25 7 5.5439 -2.5968 0.0699 26 1 5.6733 -2.2884 0.9805 27 6 4.3456 -2.6767 -0.6000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4423 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 0.8435 0.4475 2.5087 36 1 1.6996 -0.9223 3.2561 37 1 1.8964 1.7395 5.7930 38 1 0.9828 -2.3637 -0.9458 39 1 1.5219 -3.2434 -3.1730 40 1 3.8386 -3.7679 -3.7811 41 1 8.5432 -2.4703 -1.1420 42 1 8.3258 -4.1308 -0.5390 43 1 9.1186 -2.6611 1.1686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906481196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:57 Heat of formation + Delta-G solvation = -12.821175 kcal Electronic energy + Delta-G solvation = -27239.349680 eV Core-core repulsion = 23478.333649 eV Total energy + Delta-G solvation = -3761.016031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17265 -39.39600 -37.46048 -36.54948 -35.99124 -33.14124 -32.76748 -30.90143 -30.35594 -30.16276 -27.32158 -26.99599 -26.61074 -23.82260 -22.42956 -22.19259 -21.15934 -20.76206 -18.77124 -18.11414 -17.32510 -17.02408 -16.49084 -16.17814 -15.91195 -15.39132 -15.15348 -14.62429 -14.43413 -14.19154 -14.02499 -13.73940 -13.47149 -13.27851 -12.58643 -12.33850 -12.31006 -12.06501 -11.84812 -11.72258 -11.61724 -11.55980 -11.21441 -10.96587 -10.86684 -10.76996 -10.65397 -10.47371 -10.28821 -10.24185 -10.03662 -9.57345 -9.02952 -8.46469 -8.30931 -8.00625 -7.70160 -6.07348 -4.11092 0.79327 1.56103 2.62139 2.98223 3.26097 3.31456 3.34700 3.38124 3.40017 3.76084 3.99236 4.40892 4.52702 4.63841 4.88593 4.99073 5.04168 5.05808 5.24136 5.27517 5.31738 5.40576 5.46075 5.58324 5.69413 5.76631 5.99163 6.04088 6.13492 6.26639 6.36141 6.38378 6.43794 6.48750 6.62008 6.81088 6.96495 7.07275 7.19514 7.40696 7.43659 7.51018 7.81646 7.89103 8.20500 8.36156 8.83928 9.00323 9.53174 11.00791 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.005385 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.037719 B = 5198.564319 C = 7000.679364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.122 3.878 3 C -0.153 4.153 4 N -0.579 5.579 5 C 0.245 3.755 6 C -0.520 4.520 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.545 3.455 15 O -0.540 6.540 16 C -0.101 4.101 17 C -0.078 4.078 18 C -0.131 4.131 19 C -0.056 4.056 20 C 0.044 3.956 21 N -0.492 5.492 22 C 0.282 3.718 23 C 0.158 3.842 24 O -0.571 6.571 25 N -0.568 5.568 26 H 0.436 0.564 27 C 0.089 3.911 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.298 -6.386 -15.477 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 C -0.211 4.211 4 N -0.310 5.310 5 C 0.126 3.874 6 C -0.559 4.559 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.331 3.669 15 O -0.418 6.418 16 C -0.107 4.107 17 C -0.098 4.098 18 C -0.152 4.152 19 C -0.075 4.075 20 C -0.075 4.075 21 N -0.215 5.215 22 C 0.014 3.986 23 C 0.078 3.922 24 O -0.378 6.378 25 N -0.178 5.178 26 H 0.278 0.722 27 C -0.025 4.025 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.186 -6.861 -15.481 17.710 hybrid contribution 0.986 1.128 1.533 2.144 sum 6.172 -5.732 -13.948 16.294 Atomic orbital electron populations 1.22188 0.95558 1.01697 1.02554 1.21257 0.93983 0.94473 0.88559 1.22081 1.01460 0.95408 1.02130 1.48296 1.52790 1.20628 1.09247 1.19295 0.96784 0.94093 0.77224 1.21436 1.06220 1.25969 1.02285 0.92476 1.24912 0.96070 0.96975 0.96077 1.69935 1.30803 1.43088 1.09410 0.86503 0.82411 0.80371 0.78518 1.19885 1.20936 1.20911 1.18140 0.79361 0.81738 0.87676 1.90779 1.53894 1.58688 1.38477 1.19126 0.90376 1.04972 0.96232 1.21136 0.98378 0.97934 0.92375 1.20781 0.95916 1.01807 0.96680 1.20280 0.90231 0.98915 0.98097 1.18925 0.90908 1.04456 0.93211 1.70276 1.06553 1.24276 1.20389 1.23169 0.92206 0.96922 0.86294 1.20304 0.86629 1.00567 0.84673 1.86406 1.33448 1.88866 1.29065 1.42874 1.04961 1.53497 1.16467 0.72244 1.18607 0.86967 1.03203 0.93681 0.91431 0.92003 0.92896 0.89705 0.92772 0.93198 0.90236 0.94571 0.93841 0.92784 0.84599 0.84798 0.85144 0.89830 0.89841 0.75422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.04 37.15 0.34 -1.99 16 2 C 0.12 2.06 2.51 -67.94 -0.17 1.89 16 3 C -0.15 -2.64 8.34 37.15 0.31 -2.33 16 4 N -0.58 -12.38 2.38 -168.70 -0.40 -12.78 16 5 C 0.24 6.29 4.47 -5.19 -0.02 6.27 16 6 C -0.52 -14.35 7.85 -34.44 -0.27 -14.62 16 7 H 0.06 1.59 7.52 -52.49 -0.39 1.20 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.54 11.95 7.16 -12.48 -0.09 11.86 16 15 O -0.54 -14.00 16.64 5.28 0.09 -13.92 16 16 C -0.10 -1.82 4.82 -104.95 -0.51 -2.33 16 17 C -0.08 -1.11 7.41 -39.12 -0.29 -1.40 16 18 C -0.13 -1.54 9.99 -39.69 -0.40 -1.94 16 19 C -0.06 -0.72 10.09 -39.18 -0.40 -1.12 16 20 C 0.04 0.70 7.22 -84.71 -0.61 0.09 16 21 N -0.49 -7.75 11.28 -8.23 -0.09 -7.84 16 22 C 0.28 4.15 7.91 -154.76 -1.22 2.92 16 23 C 0.16 1.52 7.67 36.01 0.28 1.80 16 24 O -0.57 -5.72 13.10 -35.23 -0.46 -6.18 16 25 N -0.57 -9.80 6.03 -7.80 -0.05 -9.84 16 26 H 0.44 7.91 8.55 -40.82 -0.35 7.56 16 27 C 0.09 1.59 7.02 -83.76 -0.59 1.00 16 28 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.71 7.24 -51.93 -0.38 0.33 16 31 H 0.09 1.30 4.65 -51.93 -0.24 1.06 16 32 H 0.05 1.01 7.95 -51.93 -0.41 0.60 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.57 6.94 -51.93 -0.36 1.21 16 35 H 0.04 0.94 6.72 -51.93 -0.35 0.59 16 36 H 0.04 1.28 7.37 -51.93 -0.38 0.89 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.14 1.72 6.34 -52.49 -0.33 1.38 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.40 1.74 9.12 45.56 0.42 2.16 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -35.61 356.84 -8.38 -43.98 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.81 Total: 8.26 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -3.74 Total: 1.74 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.19 Total: -55.90 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.37 Total: -20.10 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.61 -8.38 -43.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906481196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.162 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds