Wall clock time and date at job start Tue Mar 31 2020 11:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47533 * 2 1 4 4 N 1.46499 * 109.47309 * 120.00750 * 2 1 3 5 5 C 1.46506 * 119.99803 * 294.08401 * 4 2 1 6 6 C 1.50704 * 109.46829 * 270.00444 * 5 4 2 7 7 H 1.07996 * 120.00159 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99388 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00436 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99527 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47151 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47026 * 119.99872 * 10 8 6 13 13 H 1.48501 * 109.46960 * 239.99852 * 10 8 6 14 14 C 1.34772 * 120.00503 * 114.08006 * 4 2 1 15 15 O 1.21592 * 120.00126 * 184.17342 * 14 4 2 16 16 C 1.47527 * 119.99907 * 4.18227 * 14 4 2 17 17 C 1.39430 * 120.24667 * 304.61188 * 16 14 4 18 18 C 1.38290 * 120.28273 * 180.02562 * 17 16 14 19 19 C 1.37879 * 120.72782 * 0.02562 * 18 17 16 20 20 C 1.39677 * 120.10537 * 359.97438 * 19 18 17 21 21 N 1.35856 * 133.50955 * 179.97438 * 20 19 18 22 22 C 1.30095 * 109.53466 * 180.02562 * 21 20 19 23 23 C 1.50700 * 124.97301 * 180.02562 * 22 21 20 24 24 O 1.42897 * 109.46861 * 180.02562 * 23 22 21 25 25 N 1.36118 * 110.04884 * 0.26069 * 22 21 20 26 26 H 0.97003 * 126.31209 * 179.69182 * 25 22 21 27 27 C 1.37517 * 107.38681 * 359.57712 * 25 22 21 28 28 H 1.09003 * 109.47183 * 299.99653 * 1 2 3 29 29 H 1.09004 * 109.47613 * 59.99691 * 1 2 3 30 30 H 1.09003 * 109.47639 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46752 * 240.00043 * 2 1 3 32 32 H 1.08999 * 109.47240 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47419 * 300.00546 * 3 2 1 34 34 H 1.09005 * 109.47066 * 60.00236 * 3 2 1 35 35 H 1.08997 * 109.46946 * 29.99528 * 5 4 2 36 36 H 1.08991 * 109.47134 * 149.99584 * 5 4 2 37 37 H 0.97005 * 120.00319 * 179.97438 * 9 8 6 38 38 H 1.08000 * 119.86013 * 359.97438 * 17 16 14 39 39 H 1.07999 * 119.63452 * 179.97438 * 18 17 16 40 40 H 1.08000 * 119.94581 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47266 * 60.02453 * 23 22 21 42 42 H 1.08995 * 109.47105 * 300.02046 * 23 22 21 43 43 H 0.96699 * 114.00200 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.7743 -0.1194 2.5229 6 6 2.9136 0.7950 2.8932 7 1 3.7372 0.9360 2.2089 8 6 2.9049 1.4506 4.1061 9 7 1.9023 1.2785 4.9395 10 14 4.3175 2.5835 4.5655 11 1 5.3134 2.6046 3.4641 12 1 3.7980 3.9564 4.7901 13 1 4.9642 2.0895 5.8076 14 6 2.6919 -1.8518 1.0759 15 8 3.0310 -2.4637 2.0705 16 6 3.0181 -2.3804 -0.2622 17 6 2.0078 -2.5893 -1.2002 18 6 2.3127 -3.0852 -2.4547 19 6 3.6149 -3.3808 -2.7980 20 6 4.6452 -3.1805 -1.8764 21 7 5.9893 -3.3729 -1.9197 22 6 6.5151 -3.0277 -0.7809 23 6 7.9836 -3.0998 -0.4502 24 8 8.1937 -2.6418 0.8870 25 7 5.5439 -2.5968 0.0699 26 1 5.6733 -2.2884 0.9805 27 6 4.3456 -2.6767 -0.6000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4423 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 0.8435 0.4475 2.5087 36 1 1.6996 -0.9223 3.2561 37 1 1.8964 1.7395 5.7930 38 1 0.9828 -2.3637 -0.9458 39 1 1.5219 -3.2434 -3.1730 40 1 3.8386 -3.7679 -3.7811 41 1 8.5432 -2.4703 -1.1420 42 1 8.3258 -4.1308 -0.5390 43 1 9.1186 -2.6611 1.1686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906481196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:56 Heat of formation + Delta-G solvation = -39.893394 kcal Electronic energy + Delta-G solvation = -27240.523620 eV Core-core repulsion = 23478.333649 eV Total energy + Delta-G solvation = -3762.189971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.32349 -40.98841 -38.45091 -37.69416 -37.46137 -35.01411 -34.19127 -32.52269 -31.57765 -31.26988 -29.22564 -28.08563 -27.77646 -25.60065 -23.95646 -23.38957 -22.50353 -21.92134 -20.23416 -19.05271 -18.77578 -18.58776 -18.07883 -17.44938 -17.00520 -16.87828 -16.47956 -16.26456 -15.82077 -15.26771 -15.21439 -15.07793 -14.86049 -14.75426 -14.31432 -13.95928 -13.44351 -13.37106 -13.11968 -13.03497 -12.89332 -12.88155 -12.80835 -12.75196 -12.55666 -12.27160 -12.14674 -11.89429 -11.67451 -11.60657 -11.48418 -11.22228 -10.68677 -10.66094 -9.57101 -9.40559 -9.14579 -8.24924 -6.37227 -0.34794 0.43979 1.31035 1.32964 1.41733 1.44819 1.76265 1.85630 2.22892 2.37407 2.57355 2.76357 3.04867 3.36751 3.69555 3.79634 3.95101 3.99618 4.11474 4.24096 4.26051 4.36246 4.39006 4.41793 4.44072 4.73785 4.79309 4.84568 4.88744 4.99729 5.02001 5.07154 5.16254 5.27379 5.36888 5.40587 5.43015 5.49132 5.58410 5.78280 5.82301 6.04191 6.16722 6.64055 6.65441 6.71458 6.77758 7.19486 7.36139 8.82794 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.005385 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.037719 B = 5198.564319 C = 7000.679364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.115 3.885 3 C -0.147 4.147 4 N -0.581 5.581 5 C 0.264 3.736 6 C -0.528 4.528 7 H 0.048 0.952 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.960 3.040 11 H -0.271 1.271 12 H -0.268 1.268 13 H -0.281 1.281 14 C 0.541 3.459 15 O -0.598 6.598 16 C -0.134 4.134 17 C -0.067 4.067 18 C -0.113 4.113 19 C -0.046 4.046 20 C 0.026 3.974 21 N -0.502 5.502 22 C 0.276 3.724 23 C 0.160 3.840 24 O -0.596 6.596 25 N -0.586 5.586 26 H 0.425 0.575 27 C 0.056 3.944 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.031 0.969 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.031 0.969 36 H -0.005 1.005 37 H 0.267 0.733 38 H 0.153 0.847 39 H 0.185 0.815 40 H 0.164 0.836 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -6.295 -19.094 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 C -0.205 4.205 4 N -0.311 5.311 5 C 0.143 3.857 6 C -0.566 4.566 7 H 0.066 0.934 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.785 3.215 11 H -0.196 1.196 12 H -0.193 1.193 13 H -0.207 1.207 14 C 0.329 3.671 15 O -0.480 6.480 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.133 4.133 19 C -0.065 4.065 20 C -0.092 4.092 21 N -0.225 5.225 22 C 0.009 3.991 23 C 0.081 3.919 24 O -0.407 6.407 25 N -0.195 5.195 26 H 0.264 0.736 27 C -0.056 4.056 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.171 0.829 39 H 0.203 0.797 40 H 0.181 0.819 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 5.356 -6.758 -19.159 21.010 hybrid contribution 0.923 1.046 2.588 2.940 sum 6.278 -5.712 -16.571 18.618 Atomic orbital electron populations 1.22159 0.93177 1.02732 1.03276 1.21638 0.95824 0.93897 0.87333 1.22025 1.00005 0.95855 1.02627 1.48308 1.52860 1.20832 1.09060 1.18719 0.96114 0.91997 0.78840 1.21586 1.06335 1.26249 1.02454 0.93420 1.25756 0.98620 0.98505 0.95953 1.70046 1.32586 1.44119 1.09870 0.85476 0.79184 0.78819 0.78006 1.19552 1.19323 1.20721 1.18844 0.78052 0.81204 0.88975 1.90721 1.55970 1.60365 1.40968 1.18922 0.91793 1.08374 0.94924 1.21465 0.98092 0.96563 0.92526 1.21276 0.96679 0.99272 0.96035 1.20820 0.89858 0.97170 0.98683 1.19453 0.91803 1.04784 0.93130 1.70303 1.06471 1.25009 1.20699 1.24205 0.93859 0.95415 0.85627 1.20565 0.83764 1.02595 0.85007 1.86364 1.35786 1.89066 1.29464 1.43057 1.05791 1.54399 1.16283 0.73624 1.18968 0.87131 1.04589 0.94942 0.93970 0.87917 0.91760 0.87273 0.94966 0.88943 0.93358 0.95142 0.98697 0.92449 0.82927 0.79736 0.81856 0.87299 0.87316 0.72828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.04 71.98 0.65 -3.54 16 2 C 0.12 3.82 2.51 44.99 0.11 3.94 16 3 C -0.15 -5.04 8.34 71.98 0.60 -4.44 16 4 N -0.58 -25.95 2.38 -805.91 -1.92 -27.87 16 5 C 0.26 14.48 4.47 85.63 0.38 14.87 16 6 C -0.53 -30.60 7.85 25.60 0.20 -30.40 16 7 H 0.05 2.79 7.52 -2.91 -0.02 2.77 16 8 C 0.01 0.62 5.46 84.66 0.46 1.08 16 9 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 10 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 C 0.54 24.98 7.16 86.69 0.62 25.60 16 15 O -0.60 -33.50 16.64 -4.01 -0.07 -33.56 16 16 C -0.13 -4.87 4.82 -20.08 -0.10 -4.97 16 17 C -0.07 -1.72 7.41 22.57 0.17 -1.55 16 18 C -0.11 -2.10 9.99 22.20 0.22 -1.88 16 19 C -0.05 -1.02 10.09 22.53 0.23 -0.79 16 20 C 0.03 0.82 7.22 39.41 0.28 1.10 16 21 N -0.50 -15.25 11.28 -179.95 -2.03 -17.28 16 22 C 0.28 8.09 7.91 137.90 1.09 9.18 16 23 C 0.16 2.89 7.67 71.24 0.55 3.43 16 24 O -0.60 -11.78 13.10 -148.98 -1.95 -13.73 16 25 N -0.59 -21.09 6.03 -178.60 -1.08 -22.17 16 26 H 0.43 16.69 8.55 -92.71 -0.79 15.89 16 27 C 0.06 2.05 7.02 39.26 0.28 2.32 16 28 H 0.04 1.35 6.91 -2.39 -0.02 1.34 16 29 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.06 1.58 7.24 -2.39 -0.02 1.56 16 31 H 0.11 3.12 4.65 -2.38 -0.01 3.11 16 32 H 0.03 1.21 7.95 -2.39 -0.02 1.19 16 33 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.05 1.94 6.94 -2.38 -0.02 1.93 16 35 H 0.03 1.68 6.72 -2.39 -0.02 1.67 16 36 H -0.01 -0.32 7.37 -2.39 -0.02 -0.34 16 37 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 38 H 0.15 3.35 6.34 -2.91 -0.02 3.33 16 39 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.42 3.32 9.12 -74.06 -0.68 2.64 16 Total: -1.00 -84.76 356.84 0.61 -84.14 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.40 Total: 24.93 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 5.75 Total: 13.95 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -4.74 Total: -123.32 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -2.02 Total: -47.29 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -84.76 0.61 -84.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906481196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.249 kcal (2) G-P(sol) polarization free energy of solvation -84.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds