Wall clock time and date at job start Tue Mar 31 2020 13:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.41477 * 2 1 4 4 C 1.52997 * 109.41793 * 240.13346 * 2 1 3 5 5 C 1.50573 * 110.09534 * 196.26846 * 4 2 1 6 6 O 1.21284 * 119.74522 * 255.40508 * 5 4 2 7 7 N 1.35128 * 120.51186 * 75.38121 * 5 4 2 8 8 C 1.39625 * 120.62208 * 355.72188 * 7 5 4 9 9 C 1.38727 * 120.77829 * 131.17992 * 8 7 5 10 10 C 1.37863 * 120.02103 * 178.69121 * 9 8 7 11 11 C 1.39722 * 120.07971 * 359.94169 * 10 9 8 12 12 C 1.47605 * 120.01604 * 180.58536 * 11 10 9 13 13 O 1.21587 * 120.00635 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99790 * 359.97438 * 12 11 10 15 15 C 1.46505 * 120.00239 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47187 * 180.02562 * 15 14 12 17 17 C 1.50707 * 109.46966 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99709 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99977 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00011 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47097 * 90.00278 * 21 19 17 23 23 H 1.48508 * 109.47184 * 210.00078 * 21 19 17 24 24 H 1.48502 * 109.47234 * 329.99984 * 21 19 17 25 25 C 1.39775 * 119.97132 * 0.55897 * 11 10 9 26 26 C 1.38160 * 119.73151 * 0.02562 * 25 11 10 27 27 N 1.39948 * 120.48163 * 178.07486 * 26 25 11 28 28 H 1.08993 * 109.46855 * 179.86339 * 1 2 3 29 29 H 1.08992 * 109.47335 * 299.86552 * 1 2 3 30 30 H 1.09008 * 109.46717 * 59.86639 * 1 2 3 31 31 H 1.09003 * 109.36781 * 76.07931 * 4 2 1 32 32 H 1.08993 * 109.26446 * 316.39933 * 4 2 1 33 33 H 0.97006 * 119.69424 * 175.74019 * 7 5 4 34 34 H 1.08000 * 119.99168 * 358.69752 * 9 8 7 35 35 H 1.07999 * 119.95921 * 179.97438 * 10 9 8 36 36 H 0.97000 * 120.00199 * 0.02562 * 14 12 11 37 37 H 1.08995 * 109.47186 * 300.00905 * 15 14 12 38 38 H 1.09009 * 109.46445 * 60.00161 * 15 14 12 39 39 H 1.08999 * 109.47156 * 300.00083 * 16 15 14 40 40 H 1.08997 * 109.47038 * 60.00527 * 16 15 14 41 41 H 0.97002 * 120.00135 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.13619 * 180.02562 * 25 11 10 43 43 H 0.97000 * 120.63566 * 73.00128 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0281 0.0000 4 6 2.0387 -0.7186 -1.2513 5 6 3.4909 -1.0803 -1.0858 6 8 4.3408 -0.4387 -1.6663 7 7 3.8546 -2.1140 -0.2952 8 6 2.9006 -2.8085 0.4513 9 6 2.8555 -4.1949 0.4316 10 6 1.9244 -4.8656 1.1956 11 6 1.0257 -4.1507 1.9916 12 6 0.0378 -4.8706 2.8190 13 8 -0.7438 -4.2484 3.5120 14 7 0.0022 -6.2179 2.8063 15 6 -0.9779 -6.9326 3.6279 16 6 -0.8056 -8.4401 3.4317 17 6 -1.8142 -9.1751 4.2764 18 1 -2.5084 -8.6223 4.8919 19 6 -1.8501 -10.5534 4.2641 20 7 -1.0043 -11.2265 3.5149 21 14 -3.0998 -11.4645 5.3116 22 1 -4.3442 -11.6728 4.5285 23 1 -2.5424 -12.7807 5.7146 24 1 -3.4063 -10.6645 6.5246 25 6 1.0630 -2.7535 2.0045 26 6 1.9901 -2.0856 1.2279 27 7 2.0150 -0.6867 1.1979 28 1 -0.3633 -1.0276 -0.0025 29 1 -0.3633 0.5117 0.8911 30 1 -0.3633 0.5160 -0.8889 31 1 1.9255 -0.0637 -2.1153 32 1 1.4555 -1.6261 -1.4069 33 1 4.7873 -2.3760 -0.2455 34 1 3.5501 -4.7490 -0.1823 35 1 1.8898 -5.9449 1.1792 36 1 0.6259 -6.7144 2.2538 37 1 -0.8231 -6.6830 4.6776 38 1 -1.9846 -6.6396 3.3295 39 1 -0.9602 -8.6898 2.3820 40 1 0.2010 -8.7326 3.7303 41 1 -1.0293 -12.1962 3.5066 42 1 0.3699 -2.1983 2.6191 43 1 2.3473 -0.1819 1.9567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907321525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:04 Heat of formation + Delta-G solvation = -46.132569 kcal Electronic energy + Delta-G solvation = -25668.532467 eV Core-core repulsion = 21906.071945 eV Total energy + Delta-G solvation = -3762.460522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30412 -39.70276 -38.43117 -36.76172 -35.18300 -34.95397 -32.97616 -32.34658 -30.55132 -29.70649 -28.48381 -28.23189 -25.14123 -23.83655 -22.97557 -21.65327 -21.03759 -20.71897 -20.03441 -18.34882 -17.72887 -17.38668 -16.84820 -16.46444 -16.07276 -15.59973 -15.02240 -14.97011 -14.80037 -14.54980 -14.47223 -13.96992 -13.57795 -13.48977 -13.39044 -13.17751 -12.79604 -12.58454 -12.41884 -12.30537 -12.14991 -11.80513 -11.31447 -11.23307 -11.06935 -10.67447 -10.60751 -10.37731 -10.24916 -9.93370 -9.56791 -9.39670 -9.26612 -8.88528 -8.59739 -8.41333 -8.21421 -6.12712 -4.15595 0.52967 1.03762 2.13298 2.77330 2.85595 3.17190 3.27431 3.33751 3.37469 3.60589 3.75574 4.07513 4.36339 4.39060 4.54390 4.57910 4.84426 4.86895 4.96553 5.04357 5.11221 5.21309 5.24601 5.26531 5.38737 5.54805 5.60155 5.86422 5.89073 5.94389 6.09618 6.23483 6.29718 6.34466 6.44091 6.68321 6.79041 6.82371 7.07788 7.46994 7.55810 7.56819 7.71728 7.85166 7.91901 8.23458 8.53847 8.90273 9.49513 10.98885 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.002316 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.668935 B =12087.073165 C =12713.681875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.087 0.913 4 C -0.157 4.157 5 C 0.536 3.464 6 O -0.537 6.537 7 N -0.668 5.668 8 C 0.137 3.863 9 C -0.130 4.130 10 C -0.074 4.074 11 C -0.122 4.122 12 C 0.547 3.453 13 O -0.546 6.546 14 N -0.715 5.715 15 C 0.121 3.879 16 C 0.012 3.988 17 C -0.522 4.522 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.055 4.055 26 C 0.144 3.856 27 N -0.785 5.785 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.408 0.592 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.397 0.603 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.142 0.858 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.893 20.229 -9.484 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.068 3.932 3 H 0.106 0.894 4 C -0.198 4.198 5 C 0.325 3.675 6 O -0.413 6.413 7 N -0.316 5.316 8 C 0.040 3.960 9 C -0.151 4.151 10 C -0.093 4.093 11 C -0.127 4.127 12 C 0.334 3.666 13 O -0.425 6.425 14 N -0.365 5.365 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.077 4.077 26 C 0.048 3.952 27 N -0.431 5.431 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.247 0.753 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.232 0.768 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.160 0.840 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.583 20.871 -9.544 24.502 hybrid contribution 0.157 -1.043 0.560 1.194 sum 8.740 19.828 -8.984 23.457 Atomic orbital electron populations 1.22329 0.95137 1.02954 1.02364 1.20622 0.93974 0.95579 0.82990 0.89443 1.22253 0.92517 1.03767 1.01245 1.20671 0.91614 0.78448 0.76786 1.90761 1.53333 1.50144 1.47055 1.43487 1.10338 1.33067 1.44666 1.18267 0.91717 0.91038 0.94956 1.20856 1.00786 0.92028 1.01411 1.21268 0.93441 1.00361 0.94266 1.20099 0.98440 0.93953 1.00169 1.18174 0.83688 0.82716 0.82068 1.90761 1.41662 1.67468 1.42639 1.46287 1.37659 1.05671 1.46841 1.21778 0.90283 0.94507 0.93536 1.19333 0.98078 0.87156 0.97980 1.21043 1.17401 0.91329 1.26277 0.92212 1.24994 0.95955 0.97704 0.95626 1.69952 1.36536 1.07302 1.39514 0.86510 0.81288 0.79075 0.80674 1.20542 1.21164 1.19719 1.21489 0.95664 0.92822 0.97724 1.17293 0.95731 0.84871 0.97315 1.44005 1.78384 1.01228 1.19485 0.91995 0.91664 0.91825 0.87313 0.88889 0.75314 0.84701 0.84570 0.76825 0.92325 0.92316 0.95889 0.95880 0.92819 0.83991 0.75966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 9.30 37.16 0.35 -0.74 16 2 C 0.17 1.16 3.55 -68.01 -0.24 0.92 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.16 -1.17 4.82 -27.95 -0.13 -1.30 16 5 C 0.54 5.29 7.01 -10.89 -0.08 5.21 16 6 O -0.54 -7.14 17.92 5.55 0.10 -7.04 16 7 N -0.67 -5.60 5.23 -9.71 -0.05 -5.65 16 8 C 0.14 1.19 5.60 -83.54 -0.47 0.72 16 9 C -0.13 -1.07 9.97 -39.54 -0.39 -1.47 16 10 C -0.07 -0.72 9.53 -39.16 -0.37 -1.09 16 11 C -0.12 -1.50 5.88 -104.95 -0.62 -2.12 16 12 C 0.55 8.92 7.76 -12.44 -0.10 8.83 16 13 O -0.55 -10.83 16.34 5.29 0.09 -10.74 16 14 N -0.71 -11.83 5.51 -61.32 -0.34 -12.17 16 15 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 16 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 17 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 21 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.06 -0.62 9.52 -39.04 -0.37 -0.99 16 26 C 0.14 1.33 5.41 -83.59 -0.45 0.88 16 27 N -0.78 -5.96 4.83 -52.14 -0.25 -6.21 16 28 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 31 H 0.11 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.09 0.69 7.51 -51.93 -0.39 0.30 16 33 H 0.41 2.96 8.91 -40.82 -0.36 2.59 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 1.15 6.38 -52.49 -0.33 0.81 16 36 H 0.40 5.55 6.48 -40.82 -0.26 5.29 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 42 H 0.14 1.69 7.64 -52.49 -0.40 1.29 16 43 H 0.40 2.70 8.96 -40.82 -0.37 2.33 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -33.04 360.76 -8.64 -41.68 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.88 Total: 5.06 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.45 Total: -1.48 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.10 Total: -48.92 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.19 Total: -17.78 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.04 -8.64 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907321525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.454 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds