Wall clock time and date at job start Tue Mar 31 2020 13:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.41477 * 2 1 4 4 C 1.52997 * 109.41793 * 240.13346 * 2 1 3 5 5 C 1.50573 * 110.09534 * 196.26846 * 4 2 1 6 6 O 1.21284 * 119.74522 * 255.40508 * 5 4 2 7 7 N 1.35128 * 120.51186 * 75.38121 * 5 4 2 8 8 C 1.39625 * 120.62208 * 355.72188 * 7 5 4 9 9 C 1.38727 * 120.77829 * 131.17992 * 8 7 5 10 10 C 1.37863 * 120.02103 * 178.69121 * 9 8 7 11 11 C 1.39722 * 120.07971 * 359.94169 * 10 9 8 12 12 C 1.47605 * 120.01604 * 180.58536 * 11 10 9 13 13 O 1.21587 * 120.00635 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99790 * 359.97438 * 12 11 10 15 15 C 1.46505 * 120.00239 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47187 * 180.02562 * 15 14 12 17 17 C 1.50707 * 109.46966 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99709 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99977 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00011 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47097 * 90.00278 * 21 19 17 23 23 H 1.48508 * 109.47184 * 210.00078 * 21 19 17 24 24 H 1.48502 * 109.47234 * 329.99984 * 21 19 17 25 25 C 1.39775 * 119.97132 * 0.55897 * 11 10 9 26 26 C 1.38160 * 119.73151 * 0.02562 * 25 11 10 27 27 N 1.39948 * 120.48163 * 178.07486 * 26 25 11 28 28 H 1.08993 * 109.46855 * 179.86339 * 1 2 3 29 29 H 1.08992 * 109.47335 * 299.86552 * 1 2 3 30 30 H 1.09008 * 109.46717 * 59.86639 * 1 2 3 31 31 H 1.09003 * 109.36781 * 76.07931 * 4 2 1 32 32 H 1.08993 * 109.26446 * 316.39933 * 4 2 1 33 33 H 0.97006 * 119.69424 * 175.74019 * 7 5 4 34 34 H 1.08000 * 119.99168 * 358.69752 * 9 8 7 35 35 H 1.07999 * 119.95921 * 179.97438 * 10 9 8 36 36 H 0.97000 * 120.00199 * 0.02562 * 14 12 11 37 37 H 1.08995 * 109.47186 * 300.00905 * 15 14 12 38 38 H 1.09009 * 109.46445 * 60.00161 * 15 14 12 39 39 H 1.08999 * 109.47156 * 300.00083 * 16 15 14 40 40 H 1.08997 * 109.47038 * 60.00527 * 16 15 14 41 41 H 0.97002 * 120.00135 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.13619 * 180.02562 * 25 11 10 43 43 H 0.97000 * 120.63566 * 73.00128 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0281 0.0000 4 6 2.0387 -0.7186 -1.2513 5 6 3.4909 -1.0803 -1.0858 6 8 4.3408 -0.4387 -1.6663 7 7 3.8546 -2.1140 -0.2952 8 6 2.9006 -2.8085 0.4513 9 6 2.8555 -4.1949 0.4316 10 6 1.9244 -4.8656 1.1956 11 6 1.0257 -4.1507 1.9916 12 6 0.0378 -4.8706 2.8190 13 8 -0.7438 -4.2484 3.5120 14 7 0.0022 -6.2179 2.8063 15 6 -0.9779 -6.9326 3.6279 16 6 -0.8056 -8.4401 3.4317 17 6 -1.8142 -9.1751 4.2764 18 1 -2.5084 -8.6223 4.8919 19 6 -1.8501 -10.5534 4.2641 20 7 -1.0043 -11.2265 3.5149 21 14 -3.0998 -11.4645 5.3116 22 1 -4.3442 -11.6728 4.5285 23 1 -2.5424 -12.7807 5.7146 24 1 -3.4063 -10.6645 6.5246 25 6 1.0630 -2.7535 2.0045 26 6 1.9901 -2.0856 1.2279 27 7 2.0150 -0.6867 1.1979 28 1 -0.3633 -1.0276 -0.0025 29 1 -0.3633 0.5117 0.8911 30 1 -0.3633 0.5160 -0.8889 31 1 1.9255 -0.0637 -2.1153 32 1 1.4555 -1.6261 -1.4069 33 1 4.7873 -2.3760 -0.2455 34 1 3.5501 -4.7490 -0.1823 35 1 1.8898 -5.9449 1.1792 36 1 0.6259 -6.7144 2.2538 37 1 -0.8231 -6.6830 4.6776 38 1 -1.9846 -6.6396 3.3295 39 1 -0.9602 -8.6898 2.3820 40 1 0.2010 -8.7326 3.7303 41 1 -1.0293 -12.1962 3.5066 42 1 0.3699 -2.1983 2.6191 43 1 2.3473 -0.1819 1.9567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907321525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:04 Heat of formation + Delta-G solvation = -69.718423 kcal Electronic energy + Delta-G solvation = -25669.555226 eV Core-core repulsion = 21906.071945 eV Total energy + Delta-G solvation = -3763.483281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.07778 -40.86437 -39.41933 -37.44899 -36.63376 -35.98644 -34.83691 -33.13772 -31.81513 -30.96969 -29.26022 -28.96142 -26.84879 -24.88847 -23.87038 -22.81452 -22.44953 -21.42695 -21.10185 -19.18315 -18.72192 -18.41117 -18.18620 -17.56235 -17.11160 -16.61723 -16.45790 -16.41885 -16.01666 -15.56828 -15.38949 -14.89736 -14.82322 -14.70696 -14.28350 -14.18301 -13.95598 -13.66466 -13.33750 -13.21058 -13.03487 -12.93648 -12.75510 -12.57785 -12.50293 -12.23044 -11.89937 -11.67361 -11.45603 -11.42846 -11.04942 -10.97903 -10.59000 -10.13263 -10.06217 -9.60239 -8.94310 -8.22913 -6.32734 -0.35161 0.27750 1.33321 1.43199 1.43380 1.54665 1.82613 2.06298 2.19063 2.44328 2.60484 2.78435 3.12203 3.38035 3.75177 3.78890 3.84227 4.00473 4.11458 4.30250 4.34073 4.44258 4.51140 4.51317 4.57400 4.66279 4.81045 4.87207 4.94865 5.02429 5.10852 5.14281 5.27028 5.29102 5.38657 5.46853 5.53891 5.60568 5.73322 5.80414 6.06677 6.17775 6.41278 6.60627 6.80447 6.95559 6.98813 7.22691 7.36485 8.88826 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.002316 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.668935 B =12087.073165 C =12713.681875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.102 0.898 4 C -0.154 4.154 5 C 0.536 3.464 6 O -0.573 6.573 7 N -0.659 5.659 8 C 0.144 3.856 9 C -0.118 4.118 10 C -0.068 4.068 11 C -0.139 4.139 12 C 0.548 3.452 13 O -0.587 6.587 14 N -0.710 5.710 15 C 0.140 3.860 16 C 0.022 3.978 17 C -0.546 4.546 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.963 3.037 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.059 4.059 26 C 0.150 3.850 27 N -0.785 5.785 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.415 0.585 34 H 0.164 0.836 35 H 0.150 0.850 36 H 0.410 0.590 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.011 0.989 40 H 0.011 0.989 41 H 0.266 0.734 42 H 0.128 0.872 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 20.684 -10.243 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.070 3.930 3 H 0.120 0.880 4 C -0.195 4.195 5 C 0.326 3.674 6 O -0.452 6.452 7 N -0.307 5.307 8 C 0.048 3.952 9 C -0.138 4.138 10 C -0.087 4.087 11 C -0.143 4.143 12 C 0.337 3.663 13 O -0.469 6.469 14 N -0.361 5.361 15 C 0.016 3.984 16 C -0.015 4.015 17 C -0.585 4.585 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.191 1.191 25 C -0.081 4.081 26 C 0.053 3.947 27 N -0.431 5.431 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.140 0.860 32 H 0.113 0.887 33 H 0.255 0.745 34 H 0.181 0.819 35 H 0.168 0.832 36 H 0.248 0.752 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.146 0.854 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.176 21.325 -10.310 25.402 hybrid contribution 0.036 -1.125 0.753 1.355 sum 9.212 20.200 -9.557 24.171 Atomic orbital electron populations 1.22279 0.94877 1.02033 1.03089 1.20715 0.94050 0.96053 0.82183 0.88000 1.22299 0.90858 1.04259 1.02124 1.21044 0.92186 0.78031 0.76139 1.90751 1.54474 1.51381 1.48584 1.43435 1.10697 1.32559 1.43979 1.18331 0.91249 0.91342 0.94326 1.21077 1.00312 0.91782 1.00633 1.21384 0.92810 1.01005 0.93510 1.19782 0.98927 0.94186 1.01424 1.18741 0.83691 0.82206 0.81621 1.90733 1.43550 1.68128 1.44533 1.46058 1.37294 1.06040 1.46696 1.21266 0.90827 0.92695 0.93575 1.19141 0.96651 0.89104 0.96617 1.21469 1.18101 0.92114 1.26769 0.92352 1.25835 0.97833 0.98603 0.96806 1.70048 1.37999 1.07709 1.40763 0.85480 0.78909 0.77775 0.79098 1.19809 1.20582 1.19147 1.21396 0.96066 0.92399 0.98266 1.17239 0.95135 0.85652 0.96702 1.44093 1.78308 1.00632 1.20101 0.93671 0.91833 0.90248 0.86008 0.88717 0.74496 0.81866 0.83228 0.75224 0.93401 0.93338 0.97064 0.97079 0.92551 0.85373 0.75388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.30 71.98 0.67 -1.20 16 2 C 0.18 2.01 3.55 45.02 0.16 2.17 16 3 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 4 C -0.15 -1.98 4.82 29.81 0.14 -1.84 16 5 C 0.54 9.53 7.01 87.56 0.61 10.14 16 6 O -0.57 -14.44 17.92 -3.04 -0.05 -14.50 16 7 N -0.66 -9.51 5.23 -302.81 -1.58 -11.09 16 8 C 0.14 2.17 5.60 38.40 0.22 2.39 16 9 C -0.12 -1.59 9.97 22.30 0.22 -1.37 16 10 C -0.07 -1.18 9.53 22.54 0.21 -0.96 16 11 C -0.14 -3.33 5.88 -20.07 -0.12 -3.44 16 12 C 0.55 18.07 7.76 86.72 0.67 18.75 16 13 O -0.59 -23.97 16.34 -3.99 -0.07 -24.04 16 14 N -0.71 -23.63 5.51 -466.18 -2.57 -26.19 16 15 C 0.14 5.84 5.61 86.38 0.48 6.33 16 16 C 0.02 1.09 5.09 29.85 0.15 1.24 16 17 C -0.55 -29.90 9.11 25.60 0.23 -29.67 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.01 0.44 5.46 84.65 0.46 0.91 16 20 N -0.93 -53.20 13.29 21.45 0.28 -52.92 16 21 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C -0.06 -1.29 9.52 22.62 0.22 -1.08 16 26 C 0.15 2.54 5.41 38.21 0.21 2.75 16 27 N -0.78 -10.72 4.83 -318.88 -1.54 -12.26 16 28 H 0.04 0.68 8.06 -2.39 -0.02 0.66 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.12 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.09 1.21 7.51 -2.39 -0.02 1.19 16 33 H 0.42 5.00 8.91 -92.70 -0.83 4.18 16 34 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.15 2.18 6.38 -2.91 -0.02 2.16 16 36 H 0.41 11.28 6.48 -92.71 -0.60 10.68 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.13 3.14 7.64 -2.91 -0.02 3.12 16 43 H 0.41 4.87 8.96 -92.71 -0.83 4.04 16 Total: -1.00 -71.42 360.76 -0.14 -71.55 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -1.19 Total: 19.35 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 4.55 Total: 5.11 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -5.40 Total: -102.46 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.12 Total: -38.53 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -71.42 -0.14 -71.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907321525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.836 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds