Wall clock time and date at job start Tue Mar 31 2020 12:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46877 * 2 1 4 4 O 1.21288 * 119.99874 * 0.28136 * 3 2 1 5 5 N 1.34774 * 120.00153 * 180.02562 * 3 2 1 6 6 C 1.46524 * 124.97319 * 0.02869 * 5 3 2 7 7 C 1.53732 * 105.21040 * 179.97438 * 6 5 3 8 8 C 1.51239 * 104.59108 * 0.02562 * 7 6 5 9 9 C 1.38255 * 130.88094 * 180.02562 * 8 7 6 10 10 C 1.38096 * 120.24023 * 180.02562 * 9 8 7 11 11 C 1.38940 * 119.75800 * 359.97438 * 10 9 8 12 12 N 1.39940 * 119.96216 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00309 * 33.32467 * 12 11 10 14 14 O 1.21589 * 120.00055 * 5.31791 * 13 12 11 15 15 N 1.34776 * 120.00120 * 185.31462 * 13 12 11 16 16 C 1.46497 * 119.99928 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47055 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99604 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99934 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99755 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47301 * 60.00596 * 21 19 17 23 23 H 1.48507 * 109.47027 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47392 * 300.00187 * 21 19 17 25 25 C 1.38461 * 120.07047 * 0.02562 * 11 10 9 26 26 C 1.38615 * 108.53621 * 359.77000 * 8 7 6 27 27 H 1.08999 * 109.47384 * 59.99566 * 1 2 3 28 28 H 1.09005 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47262 * 299.99377 * 1 2 3 30 30 H 1.09002 * 109.46787 * 240.00490 * 2 1 3 31 31 H 1.08994 * 109.47377 * 119.99968 * 2 1 3 32 32 H 1.09005 * 110.30009 * 298.89451 * 6 5 3 33 33 H 1.09003 * 110.29772 * 60.93024 * 6 5 3 34 34 H 1.09005 * 110.41348 * 118.77870 * 7 6 5 35 35 H 1.09000 * 110.41561 * 241.22083 * 7 6 5 36 36 H 1.07994 * 119.88469 * 359.96935 * 9 8 7 37 37 H 1.08000 * 120.12467 * 179.97438 * 10 9 8 38 38 H 0.97002 * 119.99868 * 213.32904 * 12 11 10 39 39 H 0.97000 * 119.99814 * 359.97438 * 15 13 12 40 40 H 1.08996 * 109.47291 * 300.00066 * 16 15 13 41 41 H 1.08995 * 109.47579 * 60.00187 * 16 15 13 42 42 H 0.96996 * 119.99621 * 179.97438 * 20 19 17 43 43 H 1.07997 * 119.88244 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0052 5 7 3.3573 1.6672 -0.0005 6 6 4.4025 0.6403 -0.0017 7 6 5.7299 1.4158 -0.0026 8 6 5.3205 2.8718 -0.0011 9 6 6.0819 4.0258 -0.0016 10 6 5.4691 5.2633 0.0006 11 6 4.0821 5.3460 0.0027 12 7 3.4566 6.5979 0.0044 13 6 4.0268 7.6370 -0.6371 14 8 5.0332 7.4656 -1.2975 15 7 3.4815 8.8662 -0.5465 16 6 4.1010 9.9956 -1.2443 17 6 3.3030 11.2469 -0.9821 18 1 2.4227 11.2050 -0.3579 19 6 3.6974 12.4452 -1.5384 20 7 4.7697 12.4962 -2.2982 21 14 2.7078 13.9960 -1.2140 22 1 2.6806 14.2697 0.2452 23 1 3.3359 15.1409 -1.9212 24 1 1.3201 13.8103 -1.7088 25 6 3.3182 4.1912 0.0032 26 6 3.9361 2.9403 -0.0049 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.3265 0.0223 0.8930 33 1 4.3237 0.0216 -0.8956 34 1 6.3070 1.1827 0.8923 35 1 6.3055 1.1833 -0.8985 36 1 7.1598 3.9593 -0.0027 37 1 6.0656 6.1636 0.0007 38 1 2.6126 6.7177 0.4673 39 1 2.6784 9.0028 -0.0200 40 1 5.1197 10.1321 -0.8815 41 1 4.1206 9.7945 -2.3153 42 1 5.0469 13.3392 -2.6898 43 1 2.2404 4.2590 0.0044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934181199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:49 Heat of formation + Delta-G solvation = -34.832456 kcal Electronic energy + Delta-G solvation = -25505.657248 eV Core-core repulsion = 21743.686736 eV Total energy + Delta-G solvation = -3761.970512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33968 -39.86728 -38.67243 -36.67085 -34.28077 -33.99200 -33.19170 -32.39972 -31.88243 -29.91682 -28.49752 -26.84168 -25.37425 -23.47118 -22.82535 -22.74784 -21.32755 -20.34442 -19.42058 -18.25483 -17.52982 -17.17386 -16.78817 -16.14569 -15.72163 -15.27942 -15.26187 -15.08497 -14.70349 -14.28851 -13.94769 -13.67047 -13.65044 -13.39438 -13.11514 -12.85758 -12.71625 -12.60382 -12.22085 -12.12265 -11.97848 -11.95349 -11.75727 -11.58008 -11.26488 -10.98175 -10.89965 -10.59803 -10.30608 -10.06208 -9.69991 -9.40638 -9.38701 -8.74293 -8.27384 -7.91840 -7.53690 -6.16020 -4.22944 1.29080 1.43190 2.40393 2.45721 3.20490 3.26507 3.31453 3.34174 3.62816 3.96956 4.04616 4.23909 4.32593 4.48730 4.56153 4.62615 4.75883 4.90358 4.93205 5.12114 5.14868 5.20108 5.22527 5.38700 5.45028 5.50438 5.55000 5.57548 5.61025 5.76702 5.86179 6.19864 6.26644 6.48077 6.57527 6.74516 7.06616 7.13078 7.25182 7.41881 7.51257 7.53292 7.75542 7.84313 7.99896 8.69845 8.84760 9.20929 9.44112 10.94120 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.002430 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.940508 B =11522.051622 C =12616.915178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.517 3.483 4 O -0.516 6.516 5 N -0.555 5.555 6 C 0.102 3.898 7 C -0.080 4.080 8 C -0.166 4.166 9 C -0.059 4.059 10 C -0.137 4.137 11 C 0.209 3.791 12 N -0.694 5.694 13 C 0.691 3.309 14 O -0.581 6.581 15 N -0.722 5.722 16 C 0.266 3.734 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.167 4.167 26 C 0.157 3.843 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.404 0.596 39 H 0.389 0.611 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.267 0.733 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -28.703 7.453 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.307 3.693 4 O -0.391 6.391 5 N -0.280 5.280 6 C -0.020 4.020 7 C -0.117 4.117 8 C -0.170 4.170 9 C -0.079 4.079 10 C -0.158 4.158 11 C 0.112 3.888 12 N -0.341 5.341 13 C 0.392 3.608 14 O -0.459 6.459 15 N -0.373 5.373 16 C 0.145 3.855 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.191 4.191 26 C 0.062 3.938 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.239 0.761 39 H 0.221 0.779 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.660 -28.166 6.702 29.000 hybrid contribution -1.260 0.976 0.505 1.672 sum -2.921 -27.190 7.208 28.280 Atomic orbital electron populations 1.21562 0.92593 1.01855 1.03658 1.21632 0.98884 0.92763 1.04485 1.20826 0.80181 0.92503 0.75783 1.90702 1.54198 1.46612 1.47540 1.45929 1.06114 1.05758 1.70160 1.22143 0.86361 0.90751 1.02727 1.21002 0.96139 0.90915 1.03686 1.19849 0.92244 0.94925 1.09969 1.20199 0.99375 0.90005 0.98290 1.21192 0.93261 0.98514 1.02867 1.17156 0.91547 0.83673 0.96456 1.42836 1.26533 1.07864 1.56914 1.16130 0.83726 0.80738 0.80243 1.90893 1.26200 1.83651 1.45107 1.45784 1.30916 1.06863 1.53755 1.19049 0.93679 0.80501 0.92231 1.21176 1.12066 0.92653 1.32336 0.91923 1.24941 0.95178 0.99164 0.94701 1.69968 1.23650 1.26954 1.31652 0.86452 0.80006 0.81846 0.78464 1.20061 1.21055 1.20074 1.20446 1.00825 0.88711 1.09090 1.17889 0.91538 0.84994 0.99337 0.91771 0.91788 0.91795 0.88660 0.88665 0.89982 0.89985 0.89357 0.89321 0.85506 0.83854 0.76107 0.77864 0.95445 0.95507 0.92361 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.14 -0.86 5.56 -27.88 -0.16 -1.02 16 3 C 0.52 5.69 7.79 -10.99 -0.09 5.60 16 4 O -0.52 -7.68 14.14 5.55 0.08 -7.61 16 5 N -0.56 -5.91 3.13 -112.92 -0.35 -6.27 16 6 C 0.10 0.64 6.66 -3.65 -0.02 0.61 16 7 C -0.08 -0.57 6.94 -27.24 -0.19 -0.76 16 8 C -0.17 -1.96 6.23 -104.21 -0.65 -2.61 16 9 C -0.06 -0.77 10.03 -39.63 -0.40 -1.17 16 10 C -0.14 -2.23 8.66 -39.37 -0.34 -2.57 16 11 C 0.21 3.46 6.27 -83.81 -0.53 2.93 16 12 N -0.69 -11.65 5.34 -14.31 -0.08 -11.73 16 13 C 0.69 14.62 8.30 -86.92 -0.72 13.90 16 14 O -0.58 -14.37 14.02 5.29 0.07 -14.30 16 15 N -0.72 -15.59 5.55 -66.42 -0.37 -15.96 16 16 C 0.27 7.13 5.43 -5.19 -0.03 7.10 16 17 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.17 -2.58 9.36 -39.02 -0.37 -2.95 16 26 C 0.16 2.12 6.62 -83.59 -0.55 1.57 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.14 2.62 6.42 -52.49 -0.34 2.29 16 38 H 0.40 5.49 8.83 -40.82 -0.36 5.13 16 39 H 0.39 7.17 8.34 -40.82 -0.34 6.83 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.14 2.23 6.27 -52.49 -0.33 1.90 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -35.58 361.42 -9.56 -45.14 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.97 Total: 8.18 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -4.11 Total: 6.55 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.06 Total: -59.39 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.15 Total: -21.91 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.58 -9.56 -45.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934181199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.306 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds